SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    304601 4wsm:49 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    304602 4wsm:49 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    304603 4wsm:49 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    304604 4wsm:4A (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    304605 4wsm:4E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    304606 4wsm:4I (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    304607 4wsm:4I (3.3) BS02 rna ? GO:0000049 ... P80377 26037619
    304608 4wsm:51 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304609 4wsm:52 (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    304610 4wsm:55 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    304611 4wsm:58 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    304612 4wsm:59 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304613 4wsm:5A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304614 4wsm:5A (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    304615 4wsm:5E (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    304616 4wsm:5E (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    304617 4wsm:5I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304618 4wsm:5I (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    304619 4wsm:61 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    304620 4wsm:62 (3.3) BS01 rna ? GO:0000049 ... P17291 26037619
    304621 4wsm:65 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    304622 4wsm:65 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    304623 4wsm:68 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    304624 4wsm:68 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    304625 4wsm:69 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    304626 4wsm:69 (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    304627 4wsm:6A (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    304628 4wsm:6E (3.3) BS01 rna ? GO:0000049 ... P17291 26037619
    304629 4wsm:6E (3.3) BS02 rna ? GO:0000049 ... P17291 26037619
    304630 4wsm:6I (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    304631 4wsm:6I (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    304632 4wsm:72 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304633 4wsm:75 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    304634 4wsm:75 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    304635 4wsm:78 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    304636 4wsm:7A (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    304637 4wsm:7E (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304638 4wsm:7I (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    304639 4wsm:82 (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    304640 4wsm:85 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    304641 4wsm:88 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    304642 4wsm:88 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    304643 4wsm:88 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    304644 4wsm:88 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    304645 4wsm:8A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304646 4wsm:8E (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    304647 4wsm:8E (3.3) BS02 rna ? GO:0000049 ... P80374 26037619
    304648 4wsm:8I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    304649 4wsm:95 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    304650 4wsm:98 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    304651 4wsm:9A (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    304652 4wsm:9I (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    304653 4wsm:A5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    304654 4wsm:A5 (3.3) BS02 MG ? GO:0003735 ... Q5SHP3 26037619
    304655 4wsm:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    304656 4wsm:A8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    304657 4wsm:AA (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    304658 4wsm:AI (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    304659 4wsm:B5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP0 26037619
    304660 4wsm:B8 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    304661 4wsm:B8 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    304662 4wsm:BA (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    304663 4wsm:BI (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    304664 4wsm:C5 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    304665 4wsm:C8 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    304666 4wsm:D5 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    304667 4wsm:D5 (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    304668 4wsm:D8 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    304669 4wsm:E5 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    304670 4wsm:E5 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    304671 4wsm:E5 (3.3) BS03 rna ? GO:0003735 ... P60493 26037619
    304672 4wsm:E8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    304673 4wsm:F5 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    304674 4wsm:F8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP0 26037619
    304675 4wsm:G5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    304676 4wsm:G8 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    304677 4wsm:G8 (3.3) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    304678 4wsm:H5 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    304679 4wsm:H5 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    304680 4wsm:H8 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    304681 4wsm:H8 (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    304682 4wsm:I5 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    304683 4wsm:I8 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    304684 4wsm:I8 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    304685 4wsm:I8 (3.3) BS03 rna ? GO:0003735 ... P60493 26037619
    304686 4wsm:J5 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    304687 4wsm:J8 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    304688 4wsm:J8 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    304689 4wsm:K8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    304690 4wsm:L5 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    304691 4wsm:L8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    304692 4wsm:L8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    304693 4wsm:M5 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    304694 4wsm:M8 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    304695 4wsm:M8 (3.3) BS02 rna ? GO:0003735 ... Q5SJE1 26037619
    304696 4wsm:N8 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    304697 4wsm:P8 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    304698 4wsm:Q8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    304699 4wsn:E (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    304700 4wsn:M (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    304701 4wsn:U (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    304702 4wsn:c (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    304703 4wsn:k (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    304704 4wsn:s (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    304705 4wso:A (2.05) BS01 NAD 2.7.7.18 GO:0003824 ... Q2SZT3 N/A
    304706 4wso:B (2.05) BS01 NAD 2.7.7.18 GO:0003824 ... Q2SZT3 N/A
    304707 4wsq:A (1.95) BS01 ZN 2.7.11.1 GO:0004672 ... Q2M2I8 26853940
    304708 4wsq:A (1.95) BS02 ZN 2.7.11.1 GO:0004672 ... Q2M2I8 26853940
    304709 4wsq:A (1.95) BS03 ZN 2.7.11.1 GO:0004672 ... Q2M2I8 26853940
    304710 4wsq:A (1.95) BS04 KSA 2.7.11.1 GO:0004672 ... Q2M2I8 26853940
    304711 4wsq:B (1.95) BS01 ZN 2.7.11.1 GO:0004672 ... Q2M2I8 26853940
    304712 4wsq:B (1.95) BS02 KSA 2.7.11.1 GO:0004672 ... Q2M2I8 26853940
    304713 4wss:C (2.8) BS01 SIA ? GO:0019031 ... Q0A3A5 25673707
    304714 4wss:E (2.8) BS01 SIA ? GO:0019031 ... Q0A3A5 25673707
    304715 4wss:F (2.8) BS01 SIA ? GO:0019031 ... Q0A3A5 25673707
    304716 4wsu:A (2.7) BS01 SIA ? GO:0016020 ... A0A0J9X246 25673707
    304717 4wsu:C (2.7) BS01 SIA ? GO:0016020 ... A0A0J9X246 25673707
    304718 4wsv:A (3.1) BS01 SIA ? GO:0016020 ... A0A0J9X248 25673707
    304719 4wsv:E (3.1) BS01 SIA ? GO:0016020 ... A0A0J9X248 25673707
    304720 4wsy:A (2.3) BS01 3U5 2.7.11.1 GO:0004672 ... P11309 25616902 MOAD: ic50=0.017uM
    304721 4wt1:11 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    304722 4wt1:11 (3.05) BS02 rna ? GO:0002181 ... P60405 26037619
    304723 4wt1:12 (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    304724 4wt1:15 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    304725 4wt1:19 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    304726 4wt1:19 (3.05) BS02 MG ? GO:0002181 ... P60405 26037619
    304727 4wt1:1A (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    304728 4wt1:1E (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    304729 4wt1:1I (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    304730 4wt1:21 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    304731 4wt1:21 (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    304732 4wt1:22 (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    304733 4wt1:25 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    304734 4wt1:25 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    304735 4wt1:29 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    304736 4wt1:2A (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    304737 4wt1:2A (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    304738 4wt1:2E (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    304739 4wt1:2I (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    304740 4wt1:2I (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    304741 4wt1:31 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    304742 4wt1:32 (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    304743 4wt1:32 (3.05) BS02 ZN ? GO:0003723 ... P80373 26037619
    304744 4wt1:35 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    304745 4wt1:39 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    304746 4wt1:39 (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    304747 4wt1:3A (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    304748 4wt1:3E (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    304749 4wt1:3I (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    304750 4wt1:41 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    304751 4wt1:41 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    304752 4wt1:41 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    304753 4wt1:41 (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    304754 4wt1:42 (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    304755 4wt1:45 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    304756 4wt1:45 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    304757 4wt1:45 (3.05) BS03 rna ? GO:0000049 ... P60489 26037619
    304758 4wt1:45 (3.05) BS04 MG ? GO:0000049 ... P60489 26037619
    304759 4wt1:49 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    304760 4wt1:49 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    304761 4wt1:49 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    304762 4wt1:49 (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    304763 4wt1:4A (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    304764 4wt1:4E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    304765 4wt1:4E (3.05) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    304766 4wt1:4I (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    304767 4wt1:4I (3.05) BS02 rna ? GO:0000049 ... P80377 26037619
    304768 4wt1:4I (3.05) BS03 rna ? GO:0000049 ... P80377 26037619
    304769 4wt1:51 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    304770 4wt1:52 (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    304771 4wt1:55 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    304772 4wt1:58 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    304773 4wt1:59 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    304774 4wt1:5A (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    304775 4wt1:5A (3.05) BS02 ZN N/A GO:0003735 ... N/A 26037619
    304776 4wt1:5E (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    304777 4wt1:5E (3.05) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    304778 4wt1:5I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    304779 4wt1:5I (3.05) BS02 ZN N/A GO:0003735 ... N/A 26037619
    304780 4wt1:61 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    304781 4wt1:62 (3.05) BS01 rna ? GO:0000049 ... P17291 26037619
    304782 4wt1:62 (3.05) BS02 rna ? GO:0000049 ... P17291 26037619
    304783 4wt1:65 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    304784 4wt1:65 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    304785 4wt1:68 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    304786 4wt1:68 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    304787 4wt1:69 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    304788 4wt1:69 (3.05) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    304789 4wt1:6A (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    304790 4wt1:6A (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    304791 4wt1:6E (3.05) BS01 rna ? GO:0000049 ... P17291 26037619
    304792 4wt1:6E (3.05) BS02 rna ? GO:0000049 ... P17291 26037619
    304793 4wt1:6I (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    304794 4wt1:6I (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    304795 4wt1:72 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    304796 4wt1:75 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    304797 4wt1:75 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    304798 4wt1:78 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    304799 4wt1:7A (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    304800 4wt1:7E (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).