SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    305801 4wzb:B (2.3) BS03 FE2 1.18.6.1 GO:0005524 ... P07329 16123301
    305802 4wzb:C (2.3) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 16123301
    305803 4wzb:C (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 16123301
    305804 4wzb:D (2.3) BS01 FE2 1.18.6.1 GO:0005524 ... P07329 16123301
    305805 4wzb:D (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 16123301
    305806 4wzb:D (2.3) BS03 FE2 1.18.6.1 GO:0005524 ... P07329 16123301
    305807 4wzb:E (2.3) BS01 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    305808 4wzb:E (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    305809 4wzb:E (2.3) BS03 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    305810 4wzb:F (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    305811 4wzb:F (2.3) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    305812 4wzb:G (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    305813 4wzb:G (2.3) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    305814 4wzb:H (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    305815 4wzb:H (2.3) BS02 ACP 1.18.6.1 GO:0005524 ... P00459 16123301
    305816 4wzc:A (1.842) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    305817 4wzc:A (1.842) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    305818 4wzc:A (1.842) BS03 1UC 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    305819 4wzd:11 (3.1) BS01 rna ? GO:0002181 ... P60405 26037619
    305820 4wzd:11 (3.1) BS02 MG ? GO:0002181 ... P60405 26037619
    305821 4wzd:12 (3.1) BS01 rna ? GO:0003735 ... P80371 26037619
    305822 4wzd:15 (3.1) BS01 rna ? GO:0003729 ... P60488 26037619
    305823 4wzd:19 (3.1) BS01 rna ? GO:0002181 ... P60405 26037619
    305824 4wzd:19 (3.1) BS02 rna ? GO:0002181 ... P60405 26037619
    305825 4wzd:19 (3.1) BS03 MG ? GO:0002181 ... P60405 26037619
    305826 4wzd:19 (3.1) BS04 MG ? GO:0002181 ... P60405 26037619
    305827 4wzd:1A (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    305828 4wzd:1E (3.1) BS01 rna ? GO:0003735 ... P80371 26037619
    305829 4wzd:1I (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    305830 4wzd:21 (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    305831 4wzd:21 (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    305832 4wzd:22 (3.1) BS01 rna ? GO:0003676 ... P80372 26037619
    305833 4wzd:25 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    305834 4wzd:25 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    305835 4wzd:29 (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    305836 4wzd:2A (3.1) BS01 rna ? GO:0003735 ... P80376 26037619
    305837 4wzd:2A (3.1) BS02 MG ? GO:0003735 ... P80376 26037619
    305838 4wzd:2E (3.1) BS01 rna ? GO:0003676 ... P80372 26037619
    305839 4wzd:2E (3.1) BS02 rna ? GO:0003676 ... P80372 26037619
    305840 4wzd:2I (3.1) BS01 rna ? GO:0003735 ... P80376 26037619
    305841 4wzd:2I (3.1) BS02 MG ? GO:0003735 ... P80376 26037619
    305842 4wzd:31 (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    305843 4wzd:32 (3.1) BS01 rna ? GO:0003723 ... P80373 26037619
    305844 4wzd:32 (3.1) BS02 ZN ? GO:0003723 ... P80373 26037619
    305845 4wzd:35 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    305846 4wzd:39 (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    305847 4wzd:39 (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    305848 4wzd:3A (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    305849 4wzd:3E (3.1) BS01 rna ? GO:0003723 ... P80373 26037619
    305850 4wzd:3E (3.1) BS02 MG ? GO:0003723 ... P80373 26037619
    305851 4wzd:3I (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    305852 4wzd:3I (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 26037619
    305853 4wzd:41 (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    305854 4wzd:41 (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    305855 4wzd:42 (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    305856 4wzd:45 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    305857 4wzd:45 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    305858 4wzd:49 (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    305859 4wzd:49 (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    305860 4wzd:49 (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    305861 4wzd:4A (3.1) BS01 rna ? GO:0000049 ... P80377 26037619
    305862 4wzd:4A (3.1) BS02 rna ? GO:0000049 ... P80377 26037619
    305863 4wzd:4A (3.1) BS03 MG ? GO:0000049 ... P80377 26037619
    305864 4wzd:4E (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    305865 4wzd:4I (3.1) BS01 rna ? GO:0000049 ... P80377 26037619
    305866 4wzd:51 (3.1) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    305867 4wzd:52 (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    305868 4wzd:55 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    305869 4wzd:58 (3.1) BS01 rna ? GO:0003729 ... P60488 26037619
    305870 4wzd:59 (3.1) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    305871 4wzd:5A (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    305872 4wzd:5A (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    305873 4wzd:5E (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    305874 4wzd:5I (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    305875 4wzd:5I (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    305876 4wzd:61 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    305877 4wzd:62 (3.1) BS01 rna ? GO:0000049 ... P17291 26037619
    305878 4wzd:62 (3.1) BS02 rna ? GO:0000049 ... P17291 26037619
    305879 4wzd:65 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    305880 4wzd:65 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    305881 4wzd:68 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    305882 4wzd:68 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    305883 4wzd:69 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    305884 4wzd:69 (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    305885 4wzd:6A (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    305886 4wzd:6A (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    305887 4wzd:6E (3.1) BS01 rna ? GO:0000049 ... P17291 26037619
    305888 4wzd:6E (3.1) BS02 rna ? GO:0000049 ... P17291 26037619
    305889 4wzd:6I (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    305890 4wzd:6I (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    305891 4wzd:71 (3.1) BS01 rna ? GO:0000049 ... P27150 26037619
    305892 4wzd:71 (3.1) BS02 rna ? GO:0000049 ... P27150 26037619
    305893 4wzd:72 (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    305894 4wzd:75 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    305895 4wzd:75 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    305896 4wzd:78 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    305897 4wzd:79 (3.1) BS01 rna ? GO:0000049 ... P27150 26037619
    305898 4wzd:79 (3.1) BS02 rna ? GO:0000049 ... P27150 26037619
    305899 4wzd:7A (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    305900 4wzd:7E (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    305901 4wzd:7I (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    305902 4wzd:82 (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    305903 4wzd:82 (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    305904 4wzd:85 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    305905 4wzd:85 (3.1) BS02 MG ? GO:0000027 ... P60491 26037619
    305906 4wzd:88 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    305907 4wzd:88 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    305908 4wzd:88 (3.1) BS03 MG ? GO:0000049 ... P60489 26037619
    305909 4wzd:8A (3.1) BS01 rna N/A GO:0003735 ... N/A 26037619
    305910 4wzd:8E (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    305911 4wzd:8E (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    305912 4wzd:8I (3.1) BS01 rna N/A GO:0003735 ... N/A 26037619
    305913 4wzd:95 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    305914 4wzd:98 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    305915 4wzd:9A (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    305916 4wzd:9I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    305917 4wzd:A5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    305918 4wzd:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    305919 4wzd:A8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    305920 4wzd:AA (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    305921 4wzd:AI (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    305922 4wzd:B5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 26037619
    305923 4wzd:B8 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    305924 4wzd:B8 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    305925 4wzd:BA (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    305926 4wzd:BI (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    305927 4wzd:C5 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    305928 4wzd:C5 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    305929 4wzd:C8 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    305930 4wzd:D5 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    305931 4wzd:D5 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    305932 4wzd:D8 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    305933 4wzd:E5 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    305934 4wzd:E5 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    305935 4wzd:E8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    305936 4wzd:F5 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    305937 4wzd:F8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 26037619
    305938 4wzd:G5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    305939 4wzd:G8 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    305940 4wzd:G8 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    305941 4wzd:H5 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    305942 4wzd:H5 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    305943 4wzd:H8 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    305944 4wzd:H8 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    305945 4wzd:I5 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    305946 4wzd:I8 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    305947 4wzd:I8 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    305948 4wzd:J5 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    305949 4wzd:J8 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    305950 4wzd:J8 (3.1) BS02 rna ? GO:0003735 ... P60494 26037619
    305951 4wzd:K5 (3.1) BS01 rna ? GO:0000049 ... P35871 26037619
    305952 4wzd:K8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    305953 4wzd:L5 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    305954 4wzd:L8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    305955 4wzd:L8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    305956 4wzd:M5 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    305957 4wzd:M8 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    305958 4wzd:N8 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    305959 4wzd:O8 (3.1) BS01 rna ? GO:0000049 ... P35871 26037619
    305960 4wzd:P8 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    305961 4wzd:Q8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    305962 4wze:A (1.46) BS01 FUC ? N/A B5BTR7 25428879
    305963 4wze:A (1.46) BS02 FUC ? N/A B5BTR7 25428879
    305964 4wze:B (1.46) BS01 FUC ? N/A B5BTR7 25428879
    305965 4wze:B (1.46) BS02 FUC ? N/A B5BTR7 25428879
    305966 4wzf:A (1.699) BS01 CA ? GO:0004553 ... O07242 26469317
    305967 4wzf:B (1.699) BS01 CA ? GO:0004553 ... O07242 26469317
    305968 4wzh:A (2.12) BS01 FMN 1.3.98.1 GO:0000166 ... E9AI53 25945707
    305969 4wzh:B (2.12) BS01 FMN 1.3.98.1 GO:0000166 ... E9AI53 25945707
    305970 4wzi:A (2.58) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 25775568
    305971 4wzi:B (2.58) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 25775568
    305972 4wzj:A (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    305973 4wzj:AA (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    305974 4wzj:AAA (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    305975 4wzj:AAAA (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    305976 4wzj:B (3.6) BS01 rna ? GO:0003723 ... P14678 21516107
    305977 4wzj:BB (3.6) BS01 rna ? GO:0003723 ... P14678 21516107
    305978 4wzj:BBB (3.6) BS01 rna ? GO:0003723 ... P14678 21516107
    305979 4wzj:BBBB (3.6) BS01 rna ? GO:0003723 ... P14678 21516107
    305980 4wzj:C (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    305981 4wzj:CC (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    305982 4wzj:CCC (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    305983 4wzj:CCCC (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    305984 4wzj:D (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    305985 4wzj:DD (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    305986 4wzj:DDD (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    305987 4wzj:DDDD (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    305988 4wzj:E (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    305989 4wzj:EE (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    305990 4wzj:EEE (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    305991 4wzj:EEEE (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    305992 4wzj:F (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    305993 4wzj:FF (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    305994 4wzj:FFF (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    305995 4wzj:FFFF (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    305996 4wzj:G (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    305997 4wzj:GG (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    305998 4wzj:GGG (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    305999 4wzj:GGGG (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    306000 4wzj:H (3.6) BS01 rna ? GO:0000243 ... P62318 21516107

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).