SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    306601 4x3p:A (1.8) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 28286128
    306602 4x3p:A (1.8) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 28286128
    306603 4x3p:A (1.8) BS03 CNA 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 28286128
    306604 4x3p:A (1.8) BS04 3LX 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 28286128
    306605 4x3q:A (2.586) BS01 SAH ? GO:0008168 ... C0LTM6 N/A
    306606 4x3q:B (2.586) BS01 SAH ? GO:0008168 ... C0LTM6 N/A
    306607 4x3q:C (2.586) BS01 SAH ? GO:0008168 ... C0LTM6 N/A
    306608 4x3q:D (2.586) BS01 SAH ? GO:0008168 ... C0LTM6 N/A
    306609 4x3r:A (1.86) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 25923815
    306610 4x3r:A (1.86) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 25923815
    306611 4x3r:A (1.86) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 25923815
    306612 4x3r:A (1.86) BS04 686 3.4.17.21 GO:0004180 ... Q04609 25923815 MOAD: Ki=0.0086nM
    BindingDB: Ki=0.008600nM
    306613 4x3s:A (1.6) BS01 peptide ? GO:0035102 ... Q8VDS3 25660273
    306614 4x3s:B (1.6) BS01 peptide ? GO:0035102 ... Q8VDS3 25660273
    306615 4x3t:A (2.14) BS01 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306616 4x3t:B (2.14) BS01 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306617 4x3t:C (2.14) BS01 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306618 4x3t:D (2.14) BS01 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306619 4x3t:D (2.14) BS02 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306620 4x3t:E (2.14) BS01 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306621 4x3t:E (2.14) BS02 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306622 4x3t:F (2.14) BS01 45E ? GO:0035102 ... Q8VDS3 25660273 MOAD: Kd=28.9uM
    306623 4x3u:A (1.63) BS01 SVR ? GO:0035102 ... Q8VDS3 25660273
    306624 4x3u:B (1.63) BS01 SVR ? GO:0035102 ... Q8VDS3 25660273 MOAD: ic50=8.1uM
    306625 4x3u:B (1.63) BS02 SVR ? GO:0035102 ... Q8VDS3 25660273 MOAD: ic50=8.1uM
    306626 4x3v:A (3.7) BS01 TTP 1.17.4.1 GO:0000731 ... P23921 26488902
    306627 4x3v:A (3.7) BS02 3X4 1.17.4.1 GO:0000731 ... P23921 26488902
    306628 4x3v:A (3.7) BS03 TTP 1.17.4.1 GO:0000731 ... P23921 26488902
    306629 4x3v:B (3.7) BS01 TTP 1.17.4.1 GO:0000731 ... P23921 26488902
    306630 4x3v:B (3.7) BS02 TTP 1.17.4.1 GO:0000731 ... P23921 26488902
    306631 4x3z:A (1.62) BS01 XMP 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    306632 4x3z:A (1.62) BS02 NAD 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    306633 4x3z:B (1.62) BS01 XMP 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    306634 4x3z:B (1.62) BS02 NAD 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    306635 4x41:A (3.5) BS01 SAH 2.1.1.319 GO:0016274 ... Q9NR22 26529540
    306636 4x44:A (2.0535) BS01 AMP 2.4.2.7 GO:0002055 ... P07741 N/A
    306637 4x45:B (1.75) BS01 AMP 2.4.2.7 GO:0002055 ... P07741 N/A
    306638 4x47:A (2.0) BS01 DAN N/A GO:0004308 ... N/A 26154892 MOAD: ic50=1.41mM
    306639 4x48:A (1.89) BS01 GLU ? GO:0015276 ... P19491 25905800
    306640 4x48:A (1.89) BS02 ZN ? GO:0015276 ... P19491 25905800
    306641 4x48:A (1.89) BS03 XPF ? GO:0015276 ... P19491 25905800
    306642 4x48:B (1.89) BS01 GLU ? GO:0015276 ... P19491 25905800
    306643 4x48:B (1.89) BS02 ZN ? GO:0015276 ... P19491 25905800
    306644 4x48:B (1.89) BS03 ZN ? GO:0015276 ... P19491 25905800
    306645 4x48:B (1.89) BS04 XPF ? GO:0015276 ... P19491 25905800
    306646 4x48:C (1.89) BS01 GLU ? GO:0015276 ... P19491 25905800
    306647 4x48:C (1.89) BS02 ZN ? GO:0015276 ... P19491 25905800
    306648 4x48:C (1.89) BS03 XPF ? GO:0015276 ... P19491 25905800
    306649 4x49:A (2.01) BS01 G39 N/A GO:0004308 ... N/A 26154892 MOAD: ic50=0.0296mM
    306650 4x4a:A (1.71) BS01 SKD N/A GO:0004308 ... N/A 26154892 MOAD: Ki=2.37mM
    306651 4x4b:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306652 4x4b:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306653 4x4b:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306654 4x4b:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306655 4x4b:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306656 4x4b:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306657 4x4b:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306658 4x4b:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306659 4x4c:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306660 4x4c:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306661 4x4c:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306662 4x4c:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306663 4x4c:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306664 4x4c:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306665 4x4c:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306666 4x4c:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306667 4x4d:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306668 4x4d:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306669 4x4d:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306670 4x4d:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306671 4x4d:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306672 4x4d:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306673 4x4d:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306674 4x4d:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306675 4x4e:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306676 4x4e:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306677 4x4e:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306678 4x4e:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306679 4x4e:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306680 4x4e:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306681 4x4e:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306682 4x4e:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306683 4x4f:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306684 4x4f:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306685 4x4f:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306686 4x4f:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306687 4x4f:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306688 4x4f:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306689 4x4f:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306690 4x4f:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306691 4x4g:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306692 4x4g:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306693 4x4g:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306694 4x4g:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306695 4x4g:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306696 4x4g:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306697 4x4g:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306698 4x4g:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306699 4x4h:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306700 4x4h:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306701 4x4h:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306702 4x4h:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306703 4x4h:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306704 4x4h:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306705 4x4h:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306706 4x4h:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306707 4x4i:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306708 4x4i:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306709 4x4i:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306710 4x4i:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306711 4x4i:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306712 4x4i:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306713 4x4i:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 25723923
    306714 4x4i:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 25723923
    306715 4x4j:A (2.65) BS01 FAD ? GO:0000166 ... D7RFJ3 N/A
    306716 4x4j:B (2.65) BS01 FAD ? GO:0000166 ... D7RFJ3 N/A
    306717 4x4k:A (2.3) BS01 BMA ? GO:0005507 ... H8ZRU2 26625287
    306718 4x4k:A (2.3) BS02 MAN ? GO:0005507 ... H8ZRU2 26625287
    306719 4x4k:A (2.3) BS03 CU ? GO:0005507 ... H8ZRU2 26625287
    306720 4x4k:A (2.3) BS04 CU ? GO:0005507 ... H8ZRU2 26625287
    306721 4x4k:A (2.3) BS05 CU ? GO:0005507 ... H8ZRU2 26625287
    306722 4x4k:A (2.3) BS06 CU ? GO:0005507 ... H8ZRU2 26625287
    306723 4x4k:A (2.3) BS07 MAN ? GO:0005507 ... H8ZRU2 26625287
    306724 4x4l:A (1.85) BS01 3XG 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36
    GO:0000166 ... P00352 25634381 MOAD: ic50=4.6uM
    BindingDB: IC50=20nM, EC50=3040nM, Ki=230nM
    306725 4x4l:A (1.85) BS02 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36
    GO:0000166 ... P00352 25634381
    306726 4x4m:A (3.485) BS01 BMA ? N/A P01857 25561553
    306727 4x4m:B (3.485) BS01 BMA ? N/A P01857 25561553
    306728 4x4m:C (3.485) BS01 GAL ? N/A P01857 25561553
    306729 4x4n:A (2.953) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306730 4x4n:C (2.953) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306731 4x4n:E (2.953) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306732 4x4n:F (2.953) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306733 4x4o:A (3.201) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306734 4x4o:A (3.201) BS02 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306735 4x4o:A (3.201) BS03 MN 2.7.7.72 GO:0000049 ... O28126 25640237
    306736 4x4o:C (3.201) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306737 4x4o:C (3.201) BS02 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306738 4x4o:C (3.201) BS03 MN 2.7.7.72 GO:0000049 ... O28126 25640237
    306739 4x4o:C (3.201) BS04 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306740 4x4p:A (3.0) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306741 4x4p:C (3.0) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306742 4x4p:E (3.0) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306743 4x4p:G (3.0) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306744 4x4q:A (3.15) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306745 4x4q:A (3.15) BS02 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306746 4x4q:A (3.15) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306747 4x4q:A (3.15) BS04 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306748 4x4q:C (3.15) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306749 4x4q:C (3.15) BS02 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306750 4x4q:C (3.15) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306751 4x4r:A (3.202) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306752 4x4r:A (3.202) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    306753 4x4r:A (3.202) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306754 4x4r:C (3.202) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306755 4x4r:C (3.202) BS02 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306756 4x4r:C (3.202) BS03 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    306757 4x4r:C (3.202) BS04 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306758 4x4s:A (3.25) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306759 4x4s:A (3.25) BS02 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306760 4x4s:A (3.25) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306761 4x4s:C (3.25) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306762 4x4s:C (3.25) BS02 CTP 2.7.7.72 GO:0000049 ... O28126 25640237
    306763 4x4s:C (3.25) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306764 4x4t:A (2.5) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306765 4x4t:A (2.5) BS02 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306766 4x4t:C (2.5) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306767 4x4t:E (2.5) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306768 4x4t:F (2.5) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306769 4x4u:A (2.7) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306770 4x4u:A (2.7) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    306771 4x4u:C (2.7) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306772 4x4u:E (2.7) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306773 4x4u:F (2.7) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306774 4x4u:F (2.7) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    306775 4x4v:A (2.6) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306776 4x4v:A (2.6) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    306777 4x4v:A (2.6) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306778 4x4v:C (2.6) BS01 rna 2.7.7.72 GO:0000049 ... O28126 25640237
    306779 4x4v:C (2.6) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    306780 4x4v:C (2.6) BS03 MG 2.7.7.72 GO:0000049 ... O28126 25640237
    306781 4x50:A (2.0) BS01 3X8 ? GO:0007155 ... P08191 25940742 MOAD: Kd=17.7nM
    306782 4x50:B (2.0) BS01 3X8 ? GO:0007155 ... P08191 25940742 MOAD: Kd=17.7nM
    306783 4x53:A (2.3) BS01 AZR ? GO:0008658 ... D2XKK9 25710192
    306784 4x55:A (1.941) BS01 CTJ ? GO:0005886 ... G5DE28 25710192
    306785 4x55:B (1.941) BS01 CTJ ? GO:0005886 ... G5DE28 25710192
    306786 4x56:A (2.28) BS01 CAZ ? GO:0008658 ... D2XKK9 25710192
    306787 4x58:A (1.75) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306788 4x58:A (1.75) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306789 4x58:A (1.75) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306790 4x59:A (1.8) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306791 4x59:B (1.8) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306792 4x59:B (1.8) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306793 4x59:B (1.8) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306794 4x5b:A (2.47) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306795 4x5b:B (2.47) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306796 4x5b:B (2.47) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306797 4x5b:B (2.47) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306798 4x5c:A (2.33) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306799 4x5c:A (2.33) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306800 4x5c:A (2.33) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).