SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    306801 4x5c:B (2.33) BS01 POP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306802 4x5c:B (2.33) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306803 4x5c:B (2.33) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306804 4x5d:A (2.3) BS01 BE2 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306805 4x5d:B (2.3) BS01 BE2 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306806 4x5e:A (1.77) BS01 POP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306807 4x5e:A (1.77) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306808 4x5e:A (1.77) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306809 4x5e:A (1.77) BS04 BE2 2.4.2.18 GO:0000162 ... P9WFX5 26356348 MOAD: Ki=89uM
    306810 4x5e:A (1.77) BS05 BE2 2.4.2.18 GO:0000162 ... P9WFX5 26356348 MOAD: Ki=89uM
    306811 4x5e:B (1.77) BS01 POP 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306812 4x5e:B (1.77) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306813 4x5e:B (1.77) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 26356348
    306814 4x5e:B (1.77) BS04 BE2 2.4.2.18 GO:0000162 ... P9WFX5 26356348 MOAD: Ki=89uM
    306815 4x5e:B (1.77) BS05 BE2 2.4.2.18 GO:0000162 ... P9WFX5 26356348 MOAD: Ki=89uM
    306816 4x5f:A (1.7) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306817 4x5f:B (1.7) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306818 4x5g:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306819 4x5g:B (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306820 4x5h:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306821 4x5i:A (1.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306822 4x5j:A (1.85) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    306823 4x5k:A (2.494) BS01 peptide 2.3.1.-
    2.3.1.258
    GO:0004596 ... Q9GZZ1 N/A
    306824 4x5k:A (2.494) BS02 COA 2.3.1.-
    2.3.1.258
    GO:0004596 ... Q9GZZ1 N/A BindingDB: Kd=156nM
    306825 4x5p:A (0.997) BS01 3XJ ? GO:0007155 ... P08191 25940742 MOAD: Kd=6.2nM
    306826 4x5q:A (1.12) BS01 3XN ? GO:0007155 ... P08191 25940742
    306827 4x5r:A (1.65) BS01 3XO ? GO:0007155 ... P08191 25940742 MOAD: Kd=14nM
    306828 4x5r:B (1.65) BS01 3XO ? GO:0007155 ... P08191 25940742 MOAD: Kd=14nM
    306829 4x5r:C (1.65) BS01 3XO ? GO:0007155 ... P08191 25940742 MOAD: Kd=14nM
    306830 4x5s:A (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... C1DTU5 25817590
    306831 4x5s:A (1.95) BS02 AZM 4.2.1.1 GO:0004089 ... C1DTU5 25817590
    306832 4x5s:B (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... C1DTU5 25817590
    306833 4x5s:B (1.95) BS02 AZM 4.2.1.1 GO:0004089 ... C1DTU5 25817590
    306834 4x5v:A (2.15) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26220180
    306835 4x5v:A (2.15) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26220180
    306836 4x5v:A (2.15) BS03 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26220180
    306837 4x5v:A (2.15) BS04 MG 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26220180
    306838 4x5w:A (1.34) BS01 peptide ? GO:0006955 ... P01903 27827392
    306839 4x5w:B (1.34) BS01 peptide ? GO:0006955 ... P01911 27827392
    306840 4x5y:A (1.59) BS01 3XW ? GO:0005634 ... O00255 25817203 MOAD: Kd=9.3nM
    BindingDB: IC50=15nM, Kd=10.0nM
    306841 4x5z:A (1.86) BS01 3XY ? GO:0005634 ... O00255 25817203 MOAD: Kd=23.6nM
    BindingDB: Kd=24nM
    306842 4x60:A (2.35) BS01 SFG 2.1.1.320 GO:0000387 ... O14744 25915199 BindingDB: IC50=8600nM
    306843 4x60:A (2.35) BS02 3XV 2.1.1.320 GO:0000387 ... O14744 25915199 MOAD: Kd<1nM
    BindingDB: IC50=47nM
    306844 4x61:A (2.85) BS01 SAM 2.1.1.320 GO:0000387 ... O14744 25915199
    306845 4x61:A (2.85) BS02 3XV 2.1.1.320 GO:0000387 ... O14744 25915199 BindingDB: IC50=47nM
    306846 4x62:B (3.4492) BS01 rna ? GO:0003735 ... P80371 26751643
    306847 4x62:C (3.4492) BS01 rna ? GO:0003676 ... P80372 26751643
    306848 4x62:D (3.4492) BS01 rna ? GO:0003723 ... P80373 26751643
    306849 4x62:D (3.4492) BS02 MG ? GO:0003723 ... P80373 26751643
    306850 4x62:E (3.4492) BS01 rna ? GO:0003723 ... Q5SHQ5 26751643
    306851 4x62:F (3.4492) BS01 rna ? GO:0003735 ... Q5SLP8 26751643
    306852 4x62:F (3.4492) BS02 MG ? GO:0003735 ... Q5SLP8 26751643
    306853 4x62:G (3.4492) BS01 rna ? GO:0000049 ... P17291 26751643
    306854 4x62:H (3.4492) BS01 rna ? GO:0003735 ... P0DOY9 26751643
    306855 4x62:I (3.4492) BS01 rna ? GO:0000049 ... P80374 26751643
    306856 4x62:J (3.4492) BS01 rna ? GO:0000049 ... Q5SHN7 26751643
    306857 4x62:K (3.4492) BS01 rna ? GO:0003735 ... P80376 26751643
    306858 4x62:L (3.4492) BS01 rna ? GO:0000049 ... Q5SHN3 26751643
    306859 4x62:M (3.4492) BS01 rna ? GO:0000049 ... P80377 26751643
    306860 4x62:M (3.4492) BS02 MG ? GO:0000049 ... P80377 26751643
    306861 4x62:N (3.4492) BS01 rna ? GO:0003735 ... P0DOY6 26751643
    306862 4x62:N (3.4492) BS02 ZN ? GO:0003735 ... P0DOY6 26751643
    306863 4x62:O (3.4492) BS01 rna ? GO:0003735 ... Q5SJ76 26751643
    306864 4x62:P (3.4492) BS01 rna ? GO:0003735 ... Q5SJH3 26751643
    306865 4x62:Q (3.4492) BS01 rna ? GO:0003735 ... P0DOY7 26751643
    306866 4x62:Q (3.4492) BS02 MG ? GO:0003735 ... P0DOY7 26751643
    306867 4x62:R (3.4492) BS01 rna ? GO:0003735 ... Q5SLQ0 26751643
    306868 4x62:S (3.4492) BS01 rna ? GO:0003723 ... Q5SHP2 26751643
    306869 4x62:S (3.4492) BS02 MG ? GO:0003723 ... Q5SHP2 26751643
    306870 4x62:T (3.4492) BS01 rna ? GO:0003723 ... P80380 26751643
    306871 4x62:T (3.4492) BS02 MG ? GO:0003723 ... P80380 26751643
    306872 4x63:A (3.05) BS01 SAH 2.1.1.320 GO:0000387 ... O14744 25915199 BindingDB: IC50=200nM
    306873 4x63:A (3.05) BS02 3XV 2.1.1.320 GO:0000387 ... O14744 25915199 BindingDB: IC50=47nM
    306874 4x64:B (3.35) BS01 rna ? GO:0003735 ... P80371 26751643
    306875 4x64:C (3.35) BS01 rna ? GO:0003676 ... P80372 26751643
    306876 4x64:D (3.35) BS01 rna ? GO:0003723 ... P80373 26751643
    306877 4x64:D (3.35) BS02 MG ? GO:0003723 ... P80373 26751643
    306878 4x64:E (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 26751643
    306879 4x64:F (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 26751643
    306880 4x64:G (3.35) BS01 rna ? GO:0000049 ... P17291 26751643
    306881 4x64:H (3.35) BS01 rna ? GO:0003735 ... P0DOY9 26751643
    306882 4x64:I (3.35) BS01 rna ? GO:0000049 ... P80374 26751643
    306883 4x64:J (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 26751643
    306884 4x64:K (3.35) BS01 rna ? GO:0003735 ... P80376 26751643
    306885 4x64:L (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 26751643
    306886 4x64:M (3.35) BS01 rna ? GO:0000049 ... P80377 26751643
    306887 4x64:M (3.35) BS02 MG ? GO:0000049 ... P80377 26751643
    306888 4x64:N (3.35) BS01 rna ? GO:0003735 ... P0DOY6 26751643
    306889 4x64:N (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 26751643
    306890 4x64:O (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 26751643
    306891 4x64:P (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 26751643
    306892 4x64:Q (3.35) BS01 rna ? GO:0003735 ... P0DOY7 26751643
    306893 4x64:R (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 26751643
    306894 4x64:S (3.35) BS01 rna ? GO:0003723 ... Q5SHP2 26751643
    306895 4x64:S (3.35) BS02 MG ? GO:0003723 ... Q5SHP2 26751643
    306896 4x64:T (3.35) BS01 rna ? GO:0003723 ... P80380 26751643
    306897 4x64:T (3.35) BS02 MG ? GO:0003723 ... P80380 26751643
    306898 4x65:B (3.345) BS01 rna ? GO:0003735 ... P80371 26751643
    306899 4x65:C (3.345) BS01 rna ? GO:0003676 ... P80372 26751643
    306900 4x65:D (3.345) BS01 rna ? GO:0003723 ... P80373 26751643
    306901 4x65:D (3.345) BS02 MG ? GO:0003723 ... P80373 26751643
    306902 4x65:E (3.345) BS01 rna ? GO:0003723 ... Q5SHQ5 26751643
    306903 4x65:F (3.345) BS01 rna ? GO:0003735 ... Q5SLP8 26751643
    306904 4x65:G (3.345) BS01 rna ? GO:0000049 ... P17291 26751643
    306905 4x65:H (3.345) BS01 rna ? GO:0003735 ... P0DOY9 26751643
    306906 4x65:I (3.345) BS01 rna ? GO:0000049 ... P80374 26751643
    306907 4x65:J (3.345) BS01 rna ? GO:0000049 ... Q5SHN7 26751643
    306908 4x65:K (3.345) BS01 rna ? GO:0003735 ... P80376 26751643
    306909 4x65:L (3.345) BS01 rna ? GO:0000049 ... Q5SHN3 26751643
    306910 4x65:M (3.345) BS01 rna ? GO:0000049 ... P80377 26751643
    306911 4x65:M (3.345) BS02 MG ? GO:0000049 ... P80377 26751643
    306912 4x65:N (3.345) BS01 rna ? GO:0003735 ... P0DOY6 26751643
    306913 4x65:N (3.345) BS02 ZN ? GO:0003735 ... P0DOY6 26751643
    306914 4x65:O (3.345) BS01 rna ? GO:0003735 ... Q5SJ76 26751643
    306915 4x65:P (3.345) BS01 rna ? GO:0003735 ... Q5SJH3 26751643
    306916 4x65:Q (3.345) BS01 rna ? GO:0003735 ... P0DOY7 26751643
    306917 4x65:Q (3.345) BS02 MG ? GO:0003735 ... P0DOY7 26751643
    306918 4x65:R (3.345) BS01 rna ? GO:0003735 ... Q5SLQ0 26751643
    306919 4x65:S (3.345) BS01 rna ? GO:0003723 ... Q5SHP2 26751643
    306920 4x65:S (3.345) BS02 MG ? GO:0003723 ... Q5SHP2 26751643
    306921 4x65:T (3.345) BS01 rna ? GO:0003723 ... P80380 26751643
    306922 4x65:T (3.345) BS02 MG ? GO:0003723 ... P80380 26751643
    306923 4x66:B (3.446) BS01 rna ? GO:0003735 ... P80371 26751643
    306924 4x66:C (3.446) BS01 rna ? GO:0003676 ... P80372 26751643
    306925 4x66:C (3.446) BS02 MG ? GO:0003676 ... P80372 26751643
    306926 4x66:D (3.446) BS01 rna ? GO:0003723 ... P80373 26751643
    306927 4x66:D (3.446) BS02 MG ? GO:0003723 ... P80373 26751643
    306928 4x66:E (3.446) BS01 rna ? GO:0003723 ... Q5SHQ5 26751643
    306929 4x66:F (3.446) BS01 rna ? GO:0003735 ... Q5SLP8 26751643
    306930 4x66:F (3.446) BS02 MG ? GO:0003735 ... Q5SLP8 26751643
    306931 4x66:G (3.446) BS01 rna ? GO:0000049 ... P17291 26751643
    306932 4x66:H (3.446) BS01 rna ? GO:0003735 ... P0DOY9 26751643
    306933 4x66:I (3.446) BS01 rna ? GO:0000049 ... P80374 26751643
    306934 4x66:J (3.446) BS01 rna ? GO:0000049 ... Q5SHN7 26751643
    306935 4x66:K (3.446) BS01 rna ? GO:0003735 ... P80376 26751643
    306936 4x66:L (3.446) BS01 rna ? GO:0000049 ... Q5SHN3 26751643
    306937 4x66:M (3.446) BS01 rna ? GO:0000049 ... P80377 26751643
    306938 4x66:M (3.446) BS02 MG ? GO:0000049 ... P80377 26751643
    306939 4x66:N (3.446) BS01 rna ? GO:0003735 ... P0DOY6 26751643
    306940 4x66:N (3.446) BS02 ZN ? GO:0003735 ... P0DOY6 26751643
    306941 4x66:O (3.446) BS01 rna ? GO:0003735 ... Q5SJ76 26751643
    306942 4x66:P (3.446) BS01 rna ? GO:0003735 ... Q5SJH3 26751643
    306943 4x66:Q (3.446) BS01 rna ? GO:0003735 ... P0DOY7 26751643
    306944 4x66:Q (3.446) BS02 MG ? GO:0003735 ... P0DOY7 26751643
    306945 4x66:R (3.446) BS01 rna ? GO:0003735 ... Q5SLQ0 26751643
    306946 4x66:S (3.446) BS01 rna ? GO:0003723 ... Q5SHP2 26751643
    306947 4x66:S (3.446) BS02 MG ? GO:0003723 ... Q5SHP2 26751643
    306948 4x66:T (3.446) BS01 rna ? GO:0003723 ... P80380 26751643
    306949 4x66:T (3.446) BS02 MG ? GO:0003723 ... P80380 26751643
    306950 4x67:A (4.1) BS01 rna 2.7.7.6 GO:0000428 ... P04050 25605892
    306951 4x67:A (4.1) BS02 dna 2.7.7.6 GO:0000428 ... P04050 25605892
    306952 4x67:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 25605892
    306953 4x67:B (4.1) BS01 rna 2.7.7.6 GO:0000428 ... P08518 25605892
    306954 4x67:B (4.1) BS02 dna 2.7.7.6 GO:0000428 ... P08518 25605892
    306955 4x67:B (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 25605892
    306956 4x67:C (4.1) BS01 ZN ? GO:0000428 ... P16370 25605892
    306957 4x67:I (4.1) BS01 ZN ? GO:0000428 ... P27999 25605892
    306958 4x67:I (4.1) BS02 ZN ? GO:0000428 ... P27999 25605892
    306959 4x67:J (4.1) BS01 ZN ? GO:0000428 ... P22139 25605892
    306960 4x67:L (4.1) BS01 ZN ? GO:0000428 ... P40422 25605892
    306961 4x68:A (1.68) BS01 OP0 3.5.2.6 GO:0008800 ... P24735 26089439
    306962 4x68:B (1.68) BS01 OP0 3.5.2.6 GO:0008800 ... P24735 26089439
    306963 4x69:A (1.42) BS01 OP0 3.5.2.6 GO:0008800 ... Q47066 26089439
    306964 4x69:B (1.42) BS01 OP0 3.5.2.6 GO:0008800 ... Q47066 26089439
    306965 4x6a:A (3.96) BS01 rna 2.7.7.6 GO:0000428 ... P04050 25605892
    306966 4x6a:A (3.96) BS02 dna 2.7.7.6 GO:0000428 ... P04050 25605892
    306967 4x6a:A (3.96) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 25605892
    306968 4x6a:B (3.96) BS01 rna 2.7.7.6 GO:0000428 ... P08518 25605892
    306969 4x6a:B (3.96) BS02 dna 2.7.7.6 GO:0000428 ... P08518 25605892
    306970 4x6a:B (3.96) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 25605892
    306971 4x6a:C (3.96) BS01 ZN ? GO:0000428 ... P16370 25605892
    306972 4x6a:I (3.96) BS01 ZN ? GO:0000428 ... P27999 25605892
    306973 4x6a:I (3.96) BS02 ZN ? GO:0000428 ... P27999 25605892
    306974 4x6a:J (3.96) BS01 ZN ? GO:0000428 ... P22139 25605892
    306975 4x6a:L (3.96) BS01 ZN ? GO:0000428 ... P40422 25605892
    306976 4x6c:A (2.8) BS01 42H ? N/A P06126 25642819
    306977 4x6c:C (2.8) BS01 42H ? N/A P06126 25642819
    306978 4x6e:A (2.1) BS01 42H ? N/A P06126 25642819
    306979 4x6f:A (1.91) BS01 3XU ? N/A P06126 25642819
    306980 4x6h:A (1.0) BS01 3XT 3.4.22.38 GO:0006508 ... P43235 26280490
    306981 4x6h:A (1.0) BS02 I37 3.4.22.38 GO:0006508 ... P43235 26280490 MOAD: Ki=22nM
    BindingDB: Ki=22nM
    306982 4x6i:A (1.87) BS01 3Y1 3.4.22.38 GO:0006508 ... P43235 26280490 MOAD: Ki=10nM
    BindingDB: Ki=10.0nM
    306983 4x6j:A (1.59) BS01 3Y2 3.4.22.38 GO:0006508 ... P43235 26280490
    306984 4x6k:A (1.94) BS01 3XR N/A GO:0004308 ... N/A 26154892 MOAD: ic50=0.00487mM
    306985 4x6l:A (3.19) BS01 UDP 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    306986 4x6l:B (3.19) BS01 UDP 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    306987 4x6l:C (3.19) BS01 UDP 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    306988 4x6m:A (2.4) BS01 3Y3 3.4.21.27 GO:0004252 ... P03951 25728130 MOAD: Ki=5.8nM
    BindingDB: Ki=5.8nM
    306989 4x6n:A (2.1) BS01 peptide 3.4.21.27 GO:0004252 ... P03951 25728130
    306990 4x6n:A (2.1) BS02 3Y5 3.4.21.27 GO:0004252 ... P03951 25728130 MOAD: Ki=1.5nM
    BindingDB: Ki=1.5nM
    306991 4x6o:A (2.1) BS01 3Y4 3.4.21.27 GO:0004252 ... P03951 25728130 MOAD: Ki=1.9nM
    BindingDB: IC50=3.60nM
    306992 4x6p:A (1.93) BS01 3YU 3.4.21.27 GO:0004252 ... P03951 25728130 MOAD: Ki=5nM
    BindingDB: Ki=5.0nM
    306993 4x6p:B (1.93) BS01 3YU 3.4.21.27 GO:0004252 ... P03951 25728130 MOAD: Ki=5nM
    BindingDB: Ki=5.0nM
    306994 4x6r:A (2.4) BS01 ATP 2.7.11.11 GO:0000122 ... P05132 26278174
    306995 4x6r:A (2.4) BS02 MYR 2.7.11.11 GO:0000122 ... P05132 26278174
    306996 4x6r:A (2.4) BS03 MG 2.7.11.11 GO:0000122 ... P05132 26278174
    306997 4x6r:B (2.4) BS01 ATP ? GO:0001932 ... P00514 26278174
    306998 4x6s:A (2.55) BS01 peptide ? N/A Q14451 26359549
    306999 4x6s:B (2.55) BS01 peptide ? N/A Q14451 26359549
    307000 4x6t:A (1.4) BS01 3Y6 3.5.2.6 GO:0005576 ... P9WKD3 27622739

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).