SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    307401 4xcn:A (2.9) BS01 44E N/A N/A N/A 26777395
    307402 4xcn:H (2.9) BS01 44E N/A N/A N/A 26777395
    307403 4xco:A (2.9) BS01 rna ? GO:0003723 ... Q58440 26051119
    307404 4xco:A (2.9) BS02 MG ? GO:0003723 ... Q58440 26051119
    307405 4xco:B (2.9) BS01 rna ? GO:0003723 ... Q58440 26051119
    307406 4xco:C (2.9) BS01 rna 3.6.5.4 GO:0003924 ... Q57565 26051119
    307407 4xco:C (2.9) BS02 rna 3.6.5.4 GO:0003924 ... Q57565 26051119
    307408 4xco:D (2.9) BS01 rna 3.6.5.4 GO:0003924 ... Q57565 26051119
    307409 4xcq:A (2.39) BS01 GDP 3.6.5.- GO:0005525 ... Q331T7 N/A
    307410 4xct:A (1.3) BS01 N73 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=6.7nM
    307411 4xct:A (1.3) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 26263024
    307412 4xct:A (1.3) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 26263024
    307413 4xct:A (1.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    307414 4xct:A (1.3) BS05 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    307415 4xct:A (1.3) BS06 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    307416 4xct:A (1.3) BS07 BUD 3.4.24.35 GO:0004222 ... P14780 26263024
    307417 4xcu:A (1.71) BS01 40M 2.7.10.1 GO:0004672 ... P22455 25776529
    307418 4xcv:A (1.4) BS01 NDP ? GO:0000166 ... Q2KDT2 N/A
    307419 4xcx:A (2.84) BS01 SAH 2.1.1.386 GO:0001510 ... Q5T8I9 N/A
    307420 4xcy:A (3.96) BS01 44G N/A N/A N/A 26777395
    307421 4xcy:H (3.96) BS01 44G N/A N/A N/A 26777395
    307422 4xcz:A (1.5) BS01 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307423 4xcz:A (1.5) BS02 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307424 4xcz:A (1.5) BS03 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307425 4xd0:A (1.8) BS01 T3F 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307426 4xd0:A (1.8) BS02 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307427 4xd0:A (1.8) BS03 T3F 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307428 4xd1:A (1.5) BS01 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307429 4xd1:A (1.5) BS02 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    307430 4xd2:A (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    307431 4xd2:A (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    307432 4xd2:A (1.1) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    307433 4xd2:B (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    307434 4xd2:B (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    307435 4xd2:B (1.1) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    307436 4xd3:A (1.57) BS01 ZN ? GO:0008270 ... A0A060GPQ5 27618189
    307437 4xd3:A (1.57) BS02 ZN ? GO:0008270 ... A0A060GPQ5 27618189
    307438 4xd3:G (1.57) BS01 ZN ? GO:0008270 ... A0A060GPQ5 27618189
    307439 4xd3:G (1.57) BS02 ZN ? GO:0008270 ... A0A060GPQ5 27618189
    307440 4xd4:A (1.9) BS01 ZN ? GO:0008270 ... A0A060GSX0 27618189
    307441 4xd4:A (1.9) BS02 ZN ? GO:0008270 ... A0A060GSX0 27618189
    307442 4xd4:G (1.9) BS01 ZN ? GO:0008270 ... A0A060GSX0 27618189
    307443 4xd4:G (1.9) BS02 ZN ? GO:0008270 ... A0A060GSX0 27618189
    307444 4xd5:A (1.85) BS01 ZN ? GO:0008270 ... A0A060GSW5 27618189
    307445 4xd5:A (1.85) BS02 ZN ? GO:0008270 ... A0A060GSW5 27618189
    307446 4xd5:G (1.85) BS01 ZN ? GO:0008270 ... A0A060GSW5 27618189
    307447 4xd5:G (1.85) BS02 ZN ? GO:0008270 ... A0A060GSW5 27618189
    307448 4xd6:A (1.75) BS01 ZN ? GO:0008270 ... A0A060GZX7 27618189
    307449 4xd6:A (1.75) BS02 ZN ? GO:0008270 ... A0A060GZX7 27618189
    307450 4xd6:G (1.75) BS01 ZN ? GO:0008270 ... A0A060GZX7 27618189
    307451 4xd6:G (1.75) BS02 ZN ? GO:0008270 ... A0A060GZX7 27618189
    307452 4xd7:F (3.9) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 26032434
    307453 4xd8:A (1.55) BS01 ANP ? GO:0005524 ... P54651 26599366
    307454 4xda:A (1.75) BS01 RIB 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307455 4xda:A (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307456 4xda:B (1.75) BS01 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307457 4xda:B (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307458 4xda:C (1.75) BS01 RIB 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307459 4xda:C (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307460 4xda:D (1.75) BS01 RIB 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307461 4xda:D (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    307462 4xdc:A (1.63) BS01 402 1.12.7.2 GO:0005506 ... P29166 29896366
    307463 4xdc:A (1.63) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307464 4xdc:A (1.63) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307465 4xdc:A (1.63) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307466 4xdc:A (1.63) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307467 4xdc:A (1.63) BS06 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    307468 4xdc:A (1.63) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    307469 4xdc:B (1.63) BS01 402 1.12.7.2 GO:0005506 ... P29166 29896366
    307470 4xdc:B (1.63) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307471 4xdc:B (1.63) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307472 4xdc:B (1.63) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307473 4xdc:B (1.63) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307474 4xdc:B (1.63) BS06 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    307475 4xdd:A (1.599) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307476 4xdd:A (1.599) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307477 4xdd:A (1.599) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307478 4xdd:A (1.599) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307479 4xdd:A (1.599) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    307480 4xdd:A (1.599) BS06 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    307481 4xdd:B (1.599) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307482 4xdd:B (1.599) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307483 4xdd:B (1.599) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307484 4xdd:B (1.599) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    307485 4xdd:B (1.599) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    307486 4xdd:B (1.599) BS06 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    307487 4xdg:A (1.5) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    307488 4xdg:A (1.5) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    307489 4xdg:A (1.5) BS03 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    307490 4xdg:A (1.5) BS04 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    307491 4xdg:B (1.5) BS01 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    307492 4xdg:B (1.5) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    307493 4xdg:B (1.5) BS03 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    307494 4xdg:B (1.5) BS04 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    307495 4xdh:A (1.9) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    307496 4xdh:A (1.9) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    307497 4xdh:A (1.9) BS03 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    307498 4xdh:A (1.9) BS04 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    307499 4xdh:B (1.9) BS01 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    307500 4xdh:B (1.9) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    307501 4xdh:B (1.9) BS03 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    307502 4xdh:B (1.9) BS04 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    307503 4xdi:A (1.893) BS01 HEM ? GO:0005737 ... A8JAR4 26057801
    307504 4xdi:B (1.893) BS01 HEM ? GO:0005737 ... A8JAR4 26057801
    307505 4xdj:A (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    307506 4xdj:A (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    307507 4xdj:A (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    307508 4xdj:B (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    307509 4xdj:B (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    307510 4xdj:B (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    307511 4xdj:C (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    307512 4xdj:C (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    307513 4xdj:C (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    307514 4xdj:D (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    307515 4xdj:D (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    307516 4xdj:D (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    307517 4xdk:A (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    307518 4xdk:A (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    307519 4xdk:A (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    307520 4xdk:A (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    307521 4xdk:A (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    307522 4xdk:A (3.6) BS06 405 ? GO:0005267 ... P57789 25766236
    307523 4xdk:A (3.6) BS07 408 ? GO:0005267 ... P57789 25766236
    307524 4xdk:B (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    307525 4xdk:B (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    307526 4xdk:B (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    307527 4xdk:B (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    307528 4xdk:B (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    307529 4xdk:B (3.6) BS06 405 ? GO:0005267 ... P57789 25766236
    307530 4xdk:B (3.6) BS07 408 ? GO:0005267 ... P57789 25766236
    307531 4xdk:C (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    307532 4xdk:C (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    307533 4xdk:C (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    307534 4xdk:C (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    307535 4xdk:C (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    307536 4xdk:C (3.6) BS06 408 ? GO:0005267 ... P57789 25766236
    307537 4xdk:C (3.6) BS07 405 ? GO:0005267 ... P57789 25766236
    307538 4xdk:D (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    307539 4xdk:D (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    307540 4xdk:D (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    307541 4xdk:D (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    307542 4xdk:D (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    307543 4xdk:D (3.6) BS06 408 ? GO:0005267 ... P57789 25766236
    307544 4xdk:D (3.6) BS07 405 ? GO:0005267 ... P57789 25766236
    307545 4xdl:A (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    307546 4xdl:A (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    307547 4xdl:A (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    307548 4xdl:B (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    307549 4xdl:B (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    307550 4xdl:B (3.5) BS03 40D ? GO:0005267 ... P57789 25766236
    307551 4xdl:B (3.5) BS04 K ? GO:0005267 ... P57789 25766236
    307552 4xdl:B (3.5) BS05 40D ? GO:0005267 ... P57789 25766236
    307553 4xdl:C (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    307554 4xdl:C (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    307555 4xdl:C (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    307556 4xdl:D (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    307557 4xdl:D (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    307558 4xdl:D (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    307559 4xdm:A (1.5) BS01 GDM ? GO:0005524 ... P54651 26599366
    307560 4xdo:A (1.97) BS01 ZN 1.14.11.66 N/A Q9H3R0 25755264
    307561 4xdo:A (1.97) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    307562 4xdo:B (1.97) BS01 ZN 1.14.11.66 N/A Q9H3R0 25755264
    307563 4xdo:B (1.97) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    307564 4xdp:A (2.07) BS01 ZN 1.14.11.66 N/A Q9H3R0 25755264
    307565 4xdp:A (2.07) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    307566 4xdp:B (2.07) BS01 ZN 1.14.11.66 N/A Q9H3R0 25755264
    307567 4xdp:B (2.07) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    307568 4xdq:A (1.35) BS01 CA ? GO:0004553 ... G7CI90 N/A
    307569 4xdr:A (1.4) BS01 ADN 2.7.1.180 GO:0005886 ... O83774 25944861
    307570 4xdt:A (1.452) BS01 FAD 2.7.1.180 GO:0005886 ... O83774 25944861
    307571 4xdt:A (1.452) BS02 MG 2.7.1.180 GO:0005886 ... O83774 25944861
    307572 4xdu:A (1.35) BS01 MG 2.7.1.180 GO:0005886 ... O83774 25944861
    307573 4xdu:A (1.35) BS02 ADP 2.7.1.180 GO:0005886 ... O83774 25944861
    307574 4xdv:A (2.25) BS01 40O 3.3.2.8 GO:0016787 ... Q9ZAG3 25891639
    307575 4xdv:B (2.25) BS01 40O 3.3.2.8 GO:0016787 ... Q9ZAG3 25891639
    307576 4xdv:C (2.25) BS01 40O 3.3.2.8 GO:0016787 ... Q9ZAG3 25891639
    307577 4xdv:D (2.25) BS01 40O 3.3.2.8 GO:0016787 ... Q9ZAG3 25891639
    307578 4xdy:A (1.535) BS01 MG 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307579 4xdy:A (1.535) BS02 NAI 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307580 4xdy:A (1.535) BS03 HIO 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307581 4xdy:A (1.535) BS04 HIO 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307582 4xdy:B (1.535) BS01 NAI 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307583 4xdy:B (1.535) BS02 HIO 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307584 4xdy:B (1.535) BS03 HIO 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307585 4xdy:B (1.535) BS04 MG 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307586 4xdy:B (1.535) BS05 NAI 1.1.1.382 GO:0000287 ... Q64BR7 25849365
    307587 4xdz:A (1.15) BS01 NDP 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307588 4xdz:A (1.15) BS02 MG 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307589 4xdz:A (1.15) BS03 40E 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307590 4xdz:A (1.15) BS04 40E 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307591 4xdz:B (1.15) BS01 40E 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307592 4xdz:B (1.15) BS02 NDP 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307593 4xdz:B (1.15) BS03 MG 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307594 4xdz:B (1.15) BS04 40E 1.1.1.383 GO:0000287 ... E0SRA9 25849365
    307595 4xe0:A (2.434) BS01 40L 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 25631052 MOAD: ic50=19nM
    307596 4xe1:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25733161
    307597 4xe1:A (1.8) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25733161
    307598 4xe1:A (1.8) BS03 IL5 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25733161 MOAD: Ki=77.3nM
    307599 4xe3:A (2.65) BS01 HEM ? GO:0004497 ... Q59819 26475642
    307600 4xe3:A (2.65) BS02 CL6 ? GO:0004497 ... Q59819 26475642

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).