SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    307601 4xe3:B (2.65) BS01 HEM ? GO:0004497 ... Q59819 26475642
    307602 4xe3:B (2.65) BS02 CL6 ? GO:0004497 ... Q59819 26475642
    307603 4xe5:A (3.901) BS01 MG 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    307604 4xe5:A (3.901) BS02 MG 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    307605 4xe5:A (3.901) BS03 OBN 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    307606 4xe5:A (3.901) BS04 CLR 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    307607 4xe5:A (3.901) BS05 CLR 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    307608 4xe5:B (3.901) BS01 CLR ? GO:0001671 ... G3MWR4 27050261
    307609 4xe5:G (3.901) BS01 CLR ? GO:0006811 ... Q04645 27050261
    307610 4xe6:X (2.692) BS01 06U 1.5.1.3 GO:0004146 ... P0A017 N/A BindingDB: IC50=19nM, Ki=2.8nM
    307611 4xe6:X (2.692) BS02 NDP 1.5.1.3 GO:0004146 ... P0A017 N/A
    307612 4xe8:A (2.381) BS01 ADP ? GO:0000166 ... A0A140UH76 N/A
    307613 4xe9:A (1.84) BS01 OPX 3.2.1.18 GO:0004308 ... Q54727 N/A
    307614 4xeb:A (1.7) BS01 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307615 4xeb:A (1.7) BS02 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307616 4xeb:A (1.7) BS03 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307617 4xeb:A (1.7) BS04 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307618 4xeb:A (1.7) BS05 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307619 4xeb:A (1.7) BS06 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307620 4xeb:A (1.7) BS07 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307621 4xeb:A (1.7) BS08 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... F1CYZ0 N/A
    307622 4xec:X (2.692) BS01 06U 1.5.1.3 GO:0004146 ... P0A017 26098608 BindingDB: IC50=19nM, Ki=2.8nM
    307623 4xec:X (2.692) BS02 NDP 1.5.1.3 GO:0004146 ... P0A017 26098608
    307624 4xed:A (1.23) BS01 CA ? N/A N/A N/A
    307625 4xee:A (2.9) BS01 peptide 3.2.1.17 GO:0003796 ... P00720
    P20789
    26205105
    307626 4xef:A (2.5) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307627 4xef:A (2.5) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307628 4xef:D (2.5) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307629 4xef:D (2.5) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307630 4xeg:A (1.72) BS01 dna 3.2.2.29 GO:0000700 ... Q13569 26358812
    307631 4xeg:A (1.72) BS02 dna 3.2.2.29 GO:0000700 ... Q13569 26358812
    307632 4xej:AL02 (3.8) BS01 rna ? GO:0002181 ... Q72I07 25652826
    307633 4xej:AL03 (3.8) BS01 rna ? GO:0003735 ... Q72I04 25652826
    307634 4xej:AL04 (3.8) BS01 rna ? GO:0003735 ... Q72I05 25652826
    307635 4xej:AL05 (3.8) BS01 rna ? GO:0000049 ... Q72I16 25652826
    307636 4xej:AL05 (3.8) BS02 rna ? GO:0000049 ... Q72I16 25652826
    307637 4xej:AL06 (3.8) BS01 rna ? GO:0003735 ... Q72I19 25652826
    307638 4xej:AL09 (3.8) BS01 rna ? GO:0003735 ... Q72GV5 25652826
    307639 4xej:AL11 (3.8) BS01 rna ? GO:0003735 ... P62442 25652826
    307640 4xej:AL13 (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25652826
    307641 4xej:AL14 (3.8) BS01 rna ? GO:0003735 ... Q72I14 25652826
    307642 4xej:AL14 (3.8) BS02 rna ? GO:0003735 ... Q72I14 25652826
    307643 4xej:AL15 (3.8) BS01 rna ? GO:0003735 ... Q72I23 25652826
    307644 4xej:AL16 (3.8) BS01 rna ? GO:0000049 ... Q72I11 25652826
    307645 4xej:AL16 (3.8) BS02 rna ? GO:0000049 ... Q72I11 25652826
    307646 4xej:AL17 (3.8) BS01 rna ? GO:0003735 ... Q72I33 25652826
    307647 4xej:AL18 (3.8) BS01 rna ? GO:0003735 ... Q72I20 25652826
    307648 4xej:AL18 (3.8) BS02 rna ? GO:0003735 ... Q72I20 25652826
    307649 4xej:AL19 (3.8) BS01 rna ? GO:0003735 ... Q72JU9 25652826
    307650 4xej:AL19 (3.8) BS02 rna ? GO:0003735 ... Q72JU9 25652826
    307651 4xej:AL20 (3.8) BS01 rna ? GO:0000027 ... Q72L76 25652826
    307652 4xej:AL21 (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25652826
    307653 4xej:AL22 (3.8) BS01 rna ? GO:0003735 ... Q72I09 25652826
    307654 4xej:AL23 (3.8) BS01 rna ? GO:0003735 ... Q72I06 25652826
    307655 4xej:AL24 (3.8) BS01 rna ? GO:0003723 ... Q72I15 25652826
    307656 4xej:AL25 (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25652826
    307657 4xej:AL25 (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25652826
    307658 4xej:AL27 (3.8) BS01 rna ? GO:0003735 ... Q72HR3 25652826
    307659 4xej:AL27 (3.8) BS02 rna ? GO:0003735 ... Q72HR3 25652826
    307660 4xej:AL28 (3.8) BS01 rna ? GO:0005840 ... Q72G84 25652826
    307661 4xej:AL29 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25652826
    307662 4xej:AL30 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25652826
    307663 4xej:AL30 (3.8) BS02 rna ? GO:0003735 ... Q72I22 25652826
    307664 4xej:AL32 (3.8) BS01 rna ? GO:0003735 ... P62652 25652826
    307665 4xej:AL33 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25652826
    307666 4xej:AL34 (3.8) BS01 rna ? GO:0003735 ... P80340 25652826
    307667 4xej:AL35 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25652826
    307668 4xej:AS02 (3.8) BS01 rna ? GO:0003735 ... P62662 25652826
    307669 4xej:AS03 (3.8) BS01 rna ? GO:0003676 ... P62663 25652826
    307670 4xej:AS04 (3.8) BS01 rna ? GO:0003723 ... P62664 25652826
    307671 4xej:AS04 (3.8) BS02 ZN ? GO:0003723 ... P62664 25652826
    307672 4xej:AS05 (3.8) BS01 rna ? GO:0003723 ... P62665 25652826
    307673 4xej:AS06 (3.8) BS01 rna ? GO:0003735 ... P62666 25652826
    307674 4xej:AS07 (3.8) BS01 rna ? GO:0000049 ... P62667 25652826
    307675 4xej:AS08 (3.8) BS01 rna ? GO:0003735 ... P62668 25652826
    307676 4xej:AS09 (3.8) BS01 rna ? GO:0000049 ... P62669 25652826
    307677 4xej:AS09 (3.8) BS02 rna ? GO:0000049 ... P62669 25652826
    307678 4xej:AS10 (3.8) BS01 rna ? GO:0000049 ... P62653 25652826
    307679 4xej:AS10 (3.8) BS02 rna ? GO:0000049 ... P62653 25652826
    307680 4xej:AS11 (3.8) BS01 rna ? GO:0003735 ... P62654 25652826
    307681 4xej:AS12 (3.8) BS01 rna ? GO:0000049 ... P61941 25652826
    307682 4xej:AS13 (3.8) BS01 rna ? GO:0000049 ... P62655 25652826
    307683 4xej:AS13 (3.8) BS02 rna ? GO:0000049 ... P62655 25652826
    307684 4xej:AS14 (3.8) BS01 rna ? GO:0003735 ... P62656 25652826
    307685 4xej:AS14 (3.8) BS02 ZN ? GO:0003735 ... P62656 25652826
    307686 4xej:AS15 (3.8) BS01 rna ? GO:0003735 ... P62657 25652826
    307687 4xej:AS15 (3.8) BS02 rna ? GO:0003735 ... P62657 25652826
    307688 4xej:AS16 (3.8) BS01 rna ? GO:0003735 ... P62238 25652826
    307689 4xej:AS17 (3.8) BS01 rna ? GO:0003735 ... P62658 25652826
    307690 4xej:AS18 (3.8) BS01 rna ? GO:0003735 ... P62659 25652826
    307691 4xej:AS19 (3.8) BS01 rna ? GO:0003723 ... P62660 25652826
    307692 4xej:AS20 (3.8) BS01 rna ? GO:0003723 ... P62661 25652826
    307693 4xej:BL02 (3.8) BS01 rna ? GO:0002181 ... Q72I07 25652826
    307694 4xej:BL03 (3.8) BS01 rna ? GO:0003735 ... Q72I04 25652826
    307695 4xej:BL04 (3.8) BS01 rna ? GO:0003735 ... Q72I05 25652826
    307696 4xej:BL05 (3.8) BS01 rna ? GO:0000049 ... Q72I16 25652826
    307697 4xej:BL05 (3.8) BS02 rna ? GO:0000049 ... Q72I16 25652826
    307698 4xej:BL06 (3.8) BS01 rna ? GO:0003735 ... Q72I19 25652826
    307699 4xej:BL09 (3.8) BS01 rna ? GO:0003735 ... Q72GV5 25652826
    307700 4xej:BL09 (3.8) BS02 rna ? GO:0003735 ... Q72GV5 25652826
    307701 4xej:BL11 (3.8) BS01 rna ? GO:0003735 ... P62442 25652826
    307702 4xej:BL13 (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25652826
    307703 4xej:BL14 (3.8) BS01 rna ? GO:0003735 ... Q72I14 25652826
    307704 4xej:BL14 (3.8) BS02 rna ? GO:0003735 ... Q72I14 25652826
    307705 4xej:BL15 (3.8) BS01 rna ? GO:0003735 ... Q72I23 25652826
    307706 4xej:BL16 (3.8) BS01 rna ? GO:0000049 ... Q72I11 25652826
    307707 4xej:BL16 (3.8) BS02 rna ? GO:0000049 ... Q72I11 25652826
    307708 4xej:BL17 (3.8) BS01 rna ? GO:0003735 ... Q72I33 25652826
    307709 4xej:BL18 (3.8) BS01 rna ? GO:0003735 ... Q72I20 25652826
    307710 4xej:BL18 (3.8) BS02 rna ? GO:0003735 ... Q72I20 25652826
    307711 4xej:BL19 (3.8) BS01 rna ? GO:0003735 ... Q72JU9 25652826
    307712 4xej:BL19 (3.8) BS02 rna ? GO:0003735 ... Q72JU9 25652826
    307713 4xej:BL20 (3.8) BS01 rna ? GO:0000027 ... Q72L76 25652826
    307714 4xej:BL21 (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25652826
    307715 4xej:BL22 (3.8) BS01 rna ? GO:0003735 ... Q72I09 25652826
    307716 4xej:BL23 (3.8) BS01 rna ? GO:0003735 ... Q72I06 25652826
    307717 4xej:BL24 (3.8) BS01 rna ? GO:0003723 ... Q72I15 25652826
    307718 4xej:BL25 (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25652826
    307719 4xej:BL25 (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25652826
    307720 4xej:BL27 (3.8) BS01 rna ? GO:0003735 ... Q72HR3 25652826
    307721 4xej:BL27 (3.8) BS02 rna ? GO:0003735 ... Q72HR3 25652826
    307722 4xej:BL28 (3.8) BS01 rna ? GO:0005840 ... Q72G84 25652826
    307723 4xej:BL29 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25652826
    307724 4xej:BL30 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25652826
    307725 4xej:BL30 (3.8) BS02 rna ? GO:0003735 ... Q72I22 25652826
    307726 4xej:BL32 (3.8) BS01 rna ? GO:0003735 ... P62652 25652826
    307727 4xej:BL33 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25652826
    307728 4xej:BL34 (3.8) BS01 rna ? GO:0003735 ... P80340 25652826
    307729 4xej:BL35 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25652826
    307730 4xej:BS02 (3.8) BS01 rna ? GO:0003735 ... P62662 25652826
    307731 4xej:BS03 (3.8) BS01 rna ? GO:0003676 ... P62663 25652826
    307732 4xej:BS04 (3.8) BS01 rna ? GO:0003723 ... P62664 25652826
    307733 4xej:BS05 (3.8) BS01 rna ? GO:0003723 ... P62665 25652826
    307734 4xej:BS06 (3.8) BS01 rna ? GO:0003735 ... P62666 25652826
    307735 4xej:BS07 (3.8) BS01 rna ? GO:0000049 ... P62667 25652826
    307736 4xej:BS08 (3.8) BS01 rna ? GO:0003735 ... P62668 25652826
    307737 4xej:BS09 (3.8) BS01 rna ? GO:0000049 ... P62669 25652826
    307738 4xej:BS09 (3.8) BS02 rna ? GO:0000049 ... P62669 25652826
    307739 4xej:BS10 (3.8) BS01 rna ? GO:0000049 ... P62653 25652826
    307740 4xej:BS11 (3.8) BS01 rna ? GO:0003735 ... P62654 25652826
    307741 4xej:BS12 (3.8) BS01 rna ? GO:0000049 ... P61941 25652826
    307742 4xej:BS13 (3.8) BS01 rna ? GO:0000049 ... P62655 25652826
    307743 4xej:BS13 (3.8) BS02 rna ? GO:0000049 ... P62655 25652826
    307744 4xej:BS14 (3.8) BS01 rna ? GO:0003735 ... P62656 25652826
    307745 4xej:BS14 (3.8) BS02 ZN ? GO:0003735 ... P62656 25652826
    307746 4xej:BS15 (3.8) BS01 rna ? GO:0003735 ... P62657 25652826
    307747 4xej:BS15 (3.8) BS02 rna ? GO:0003735 ... P62657 25652826
    307748 4xej:BS16 (3.8) BS01 rna ? GO:0003735 ... P62238 25652826
    307749 4xej:BS17 (3.8) BS01 rna ? GO:0003735 ... P62658 25652826
    307750 4xej:BS18 (3.8) BS01 rna ? GO:0003735 ... P62659 25652826
    307751 4xej:BS19 (3.8) BS01 rna ? GO:0003723 ... P62660 25652826
    307752 4xej:BS20 (3.8) BS01 rna ? GO:0003723 ... P62661 25652826
    307753 4xek:A (1.793) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307754 4xem:A (1.278) BS01 A5A 6.1.1.7 GO:0000166 ... P49588 N/A
    307755 4xeo:A (1.38) BS01 A5A 6.1.1.7 GO:0000166 ... P49588 N/A
    307756 4xeo:A (1.38) BS02 MG 6.1.1.7 GO:0000166 ... P49588 N/A
    307757 4xeo:B (1.38) BS01 A5A 6.1.1.7 GO:0000166 ... P49588 N/A
    307758 4xeo:B (1.38) BS02 MG 6.1.1.7 GO:0000166 ... P49588 N/A
    307759 4xep:A (1.5) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11
    GO:0000166 ... P66881 26327371
    307760 4xeq:A (1.7) BS01 PAF N/A GO:0030288 ... N/A N/A
    307761 4xeq:B (1.7) BS01 PAF N/A GO:0030288 ... N/A N/A
    307762 4xeq:C (1.7) BS01 PAF N/A GO:0030288 ... N/A N/A
    307763 4xeq:D (1.7) BS01 PAF N/A GO:0030288 ... N/A N/A
    307764 4xer:A (1.97) BS01 CA 3.1.3.5
    3.1.3.6
    3.6.1.11
    GO:0000166 ... P66881 26327371
    307765 4xer:B (1.97) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11
    GO:0000166 ... P66881 26327371
    307766 4xer:C (1.97) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11
    GO:0000166 ... P66881 26327371
    307767 4xer:D (1.97) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11
    GO:0000166 ... P66881 26327371
    307768 4xes:A (2.6) BS01 peptide 3.2.1.17 GO:0003796 ... P00720
    P20789
    26205105
    307769 4xet:A (1.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    307770 4xeu:A (1.95) BS01 CA 2.2.1.1 GO:0004802 ... Q9I5Y8 N/A
    307771 4xeu:A (1.95) BS02 CA 2.2.1.1 GO:0004802 ... Q9I5Y8 N/A
    307772 4xev:A (2.0073) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307773 4xev:D (2.0073) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    307774 4xew:A (2.47) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 26068403
    307775 4xew:A (2.47) BS02 40N 2.6.1.62 GO:0004015 ... P9WQ81 26068403 MOAD: ic50=0.44uM
    307776 4xew:A (2.47) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ81 26068403
    307777 4xew:A (2.47) BS04 40N 2.6.1.62 GO:0004015 ... P9WQ81 26068403 MOAD: ic50=0.44uM
    307778 4xew:B (2.47) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 26068403
    307779 4xew:B (2.47) BS02 PLP 2.6.1.62 GO:0004015 ... P9WQ81 26068403
    307780 4xew:B (2.47) BS03 40N 2.6.1.62 GO:0004015 ... P9WQ81 26068403 MOAD: ic50=0.44uM
    307781 4xey:A (2.891) BS01 1N1 2.7.10.2 GO:0004672 ... P00519 25779001 BindingDB: IC50=3.1nM, Kd=1.2nM, EC50=0.040000nM
    307782 4xey:B (2.891) BS01 1N1 2.7.10.2 GO:0004672 ... P00519 25779001 BindingDB: IC50=3.1nM, Kd=1.2nM, EC50=0.040000nM
    307783 4xez:A (1.2469) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    307784 4xez:A (1.2469) BS02 THJ 1.13.11.20 GO:0005506 ... P21816 27477048
    307785 4xf0:A (1.3994) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    307786 4xf0:A (1.3994) BS02 CYS 1.13.11.20 GO:0005506 ... P21816 27477048
    307787 4xf0:A (1.3994) BS03 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    307788 4xf1:A (1.55) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    307789 4xf1:A (1.55) BS02 CYS 1.13.11.20 GO:0005506 ... P21816 27477048
    307790 4xf3:A (1.55) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    307791 4xf3:A (1.55) BS02 CYS 1.13.11.20 GO:0005506 ... P21816 27477048
    307792 4xf4:A (1.3485) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    307793 4xf5:A (1.45) BS01 2A1 ? GO:0055085 ... Q1QZR9 N/A
    307794 4xf5:B (1.45) BS01 2A1 ? GO:0055085 ... Q1QZR9 N/A
    307795 4xf6:A (2.08) BS01 LIP 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    307796 4xf6:A (2.08) BS02 ADP 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    307797 4xf6:A (2.08) BS03 INS 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    307798 4xf6:B (2.08) BS01 LIP 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    307799 4xf6:B (2.08) BS02 ADP 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    307800 4xf6:B (2.08) BS03 INS 2.7.1.64 GO:0000166 ... Q5JDA3 25972008

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).