SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    308201 4xjk:G (1.76) BS02 MN ? GO:0002523 ... P05109 25597447
    308202 4xjk:H (1.76) BS01 MN ? GO:0002523 ... P06702 25597447
    308203 4xjk:H (1.76) BS02 CA ? GO:0002523 ... P06702 25597447
    308204 4xjk:I (1.76) BS01 CA ? GO:0002523 ... P05109 25597447
    308205 4xjk:I (1.76) BS02 MN ? GO:0002523 ... P05109 25597447
    308206 4xjk:J (1.76) BS01 MN ? GO:0002523 ... P06702 25597447
    308207 4xjk:J (1.76) BS02 CA ? GO:0002523 ... P06702 25597447
    308208 4xjl:A (1.85) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308209 4xjl:A (1.85) BS02 41F 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308210 4xjl:A (1.85) BS03 41F 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308211 4xjl:A (1.85) BS04 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308212 4xjl:B (1.85) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308213 4xjl:B (1.85) BS02 41F 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308214 4xjl:B (1.85) BS03 41F 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308215 4xjl:B (1.85) BS04 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308216 4xjm:A (1.6) BS01 41E 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308217 4xjm:A (1.6) BS02 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308218 4xjm:A (1.6) BS03 41E 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308219 4xjm:A (1.6) BS04 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308220 4xjm:B (1.6) BS01 41E 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308221 4xjm:B (1.6) BS02 41E 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308222 4xjm:B (1.6) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ81 N/A
    308223 4xjn:A (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308224 4xjn:B (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308225 4xjn:C (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308226 4xjn:D (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308227 4xjn:E (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308228 4xjn:F (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308229 4xjn:G (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308230 4xjn:H (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308231 4xjn:I (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308232 4xjn:J (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308233 4xjn:K (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308234 4xjn:L (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308235 4xjn:M (3.11) BS01 rna ? GO:0003723 ... Q88435 25831513
    308236 4xjo:A (1.5) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308237 4xjo:A (1.5) BS02 41O 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=132nM
    308238 4xjo:A (1.5) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308239 4xjo:A (1.5) BS04 41O 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=132nM
    308240 4xjo:B (1.5) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308241 4xjo:B (1.5) BS02 41O 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=132nM
    308242 4xjo:B (1.5) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308243 4xjo:B (1.5) BS04 41O 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=132nM
    308244 4xjp:A (1.6) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308245 4xjp:A (1.6) BS02 41N 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=108nM
    308246 4xjp:A (1.6) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308247 4xjp:A (1.6) BS04 41N 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=108nM
    308248 4xjp:B (1.6) BS01 41N 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=108nM
    308249 4xjp:B (1.6) BS02 PLP 2.6.1.62 GO:0004015 ... P9WQ81 28594172
    308250 4xjp:B (1.6) BS03 41N 2.6.1.62 GO:0004015 ... P9WQ81 28594172 MOAD: Kd=108nM
    308251 4xjq:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 25676091
    308252 4xjq:B (1.9) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 25676091
    308253 4xjr:A (3.0) BS01 CA 3.2.1.18 GO:0004308 ... P08492 25676091
    308254 4xjr:A (3.0) BS02 OEL 3.2.1.18 GO:0004308 ... P08492 25676091
    308255 4xjr:B (3.0) BS01 CA 3.2.1.18 GO:0004308 ... P08492 25676091
    308256 4xjr:B (3.0) BS02 OEL 3.2.1.18 GO:0004308 ... P08492 25676091
    308257 4xjs:A (2.8) BS01 733 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 26267483 BindingDB: IC50=76nM
    308258 4xjs:A (2.8) BS02 HSX 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 26267483
    308259 4xjt:A (2.6) BS01 41Z 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 26267483 BindingDB: IC50=7200nM
    308260 4xjt:A (2.6) BS02 NA7 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 26267483
    308261 4xju:A (1.94) BS01 19D 3.2.1.18 GO:0004308 ... Q54727 N/A
    308262 4xjw:A (1.53) BS01 OPX 3.2.1.18 GO:0004308 ... Q54727 N/A
    308263 4xjx:A (2.4) BS01 ATP 3.1.21.3 GO:0003677 ... P10486 N/A
    308264 4xjx:B (2.4) BS01 ATP 3.1.21.3 GO:0003677 ... P10486 N/A
    308265 4xk4:A (2.27) BS01 DUC ? GO:0000976 ... P0ACU2 N/A
    308266 4xk4:B (2.27) BS01 DUC ? GO:0000976 ... P0ACU2 N/A
    308267 4xk4:C (2.27) BS01 DUC ? GO:0000976 ... P0ACU2 N/A
    308268 4xk4:D (2.27) BS01 DUC ? GO:0000976 ... P0ACU2 N/A
    308269 4xk8:1 (2.8) BS01 CLA ? GO:0009765 ... Q01667 26023133
    308270 4xk8:1 (2.8) BS02 CHL ? GO:0009765 ... Q01667 26023133
    308271 4xk8:1 (2.8) BS03 CLA ? GO:0009765 ... Q01667 26023133
    308272 4xk8:1 (2.8) BS04 CLA ? GO:0009765 ... Q01667 26023133
    308273 4xk8:1 (2.8) BS05 CLA ? GO:0009765 ... Q01667 26023133
    308274 4xk8:1 (2.8) BS06 CLA ? GO:0009765 ... Q01667 26023133
    308275 4xk8:1 (2.8) BS07 CHL ? GO:0009765 ... Q01667 26023133
    308276 4xk8:1 (2.8) BS08 CLA ? GO:0009765 ... Q01667 26023133
    308277 4xk8:1 (2.8) BS09 CLA ? GO:0009765 ... Q01667 26023133
    308278 4xk8:1 (2.8) BS10 CLA ? GO:0009765 ... Q01667 26023133
    308279 4xk8:1 (2.8) BS11 CLA ? GO:0009765 ... Q01667 26023133
    308280 4xk8:1 (2.8) BS12 CLA ? GO:0009765 ... Q01667 26023133
    308281 4xk8:1 (2.8) BS13 CLA ? GO:0009765 ... Q01667 26023133
    308282 4xk8:1 (2.8) BS14 CLA ? GO:0009765 ... Q01667 26023133
    308283 4xk8:2 (2.8) BS01 CHL ? GO:0009765 ... Q41038 26023133
    308284 4xk8:2 (2.8) BS02 CLA ? GO:0009765 ... Q41038 26023133
    308285 4xk8:2 (2.8) BS03 CLA ? GO:0009765 ... Q41038 26023133
    308286 4xk8:2 (2.8) BS04 CLA ? GO:0009765 ... Q41038 26023133
    308287 4xk8:2 (2.8) BS05 CHL ? GO:0009765 ... Q41038 26023133
    308288 4xk8:2 (2.8) BS06 CHL ? GO:0009765 ... Q41038 26023133
    308289 4xk8:2 (2.8) BS07 CHL ? GO:0009765 ... Q41038 26023133
    308290 4xk8:2 (2.8) BS08 CLA ? GO:0009765 ... Q41038 26023133
    308291 4xk8:2 (2.8) BS09 CLA ? GO:0009765 ... Q41038 26023133
    308292 4xk8:2 (2.8) BS10 CLA ? GO:0009765 ... Q41038 26023133
    308293 4xk8:2 (2.8) BS11 CLA ? GO:0009765 ... Q41038 26023133
    308294 4xk8:2 (2.8) BS12 CLA ? GO:0009765 ... Q41038 26023133
    308295 4xk8:2 (2.8) BS13 CLA ? GO:0009765 ... Q41038 26023133
    308296 4xk8:2 (2.8) BS14 CHL ? GO:0009765 ... Q41038 26023133
    308297 4xk8:2 (2.8) BS15 CLA ? GO:0009765 ... Q41038 26023133
    308298 4xk8:2 (2.8) BS16 CLA ? GO:0009765 ... Q41038 26023133
    308299 4xk8:3 (2.8) BS01 CLA ? GO:0009765 ... Q32904 26023133
    308300 4xk8:3 (2.8) BS02 CLA ? GO:0009765 ... Q32904 26023133
    308301 4xk8:3 (2.8) BS03 CLA ? GO:0009765 ... Q32904 26023133
    308302 4xk8:3 (2.8) BS04 CHL ? GO:0009765 ... Q32904 26023133
    308303 4xk8:3 (2.8) BS05 CLA ? GO:0009765 ... Q32904 26023133
    308304 4xk8:3 (2.8) BS06 CLA ? GO:0009765 ... Q32904 26023133
    308305 4xk8:3 (2.8) BS07 CLA ? GO:0009765 ... Q32904 26023133
    308306 4xk8:3 (2.8) BS08 CLA ? GO:0009765 ... Q32904 26023133
    308307 4xk8:3 (2.8) BS09 CLA ? GO:0009765 ... Q32904 26023133
    308308 4xk8:3 (2.8) BS10 CHL ? GO:0009765 ... Q32904 26023133
    308309 4xk8:3 (2.8) BS11 CLA ? GO:0009765 ... Q32904 26023133
    308310 4xk8:3 (2.8) BS12 CLA ? GO:0009765 ... Q32904 26023133
    308311 4xk8:3 (2.8) BS13 CLA ? GO:0009765 ... Q32904 26023133
    308312 4xk8:3 (2.8) BS14 CLA ? GO:0009765 ... Q32904 26023133
    308313 4xk8:3 (2.8) BS15 CLA ? GO:0009765 ... Q32904 26023133
    308314 4xk8:3 (2.8) BS16 CLA ? GO:0009765 ... Q32904 26023133
    308315 4xk8:4 (2.8) BS01 CHL ? GO:0009765 ... Q9SQL2 26023133
    308316 4xk8:4 (2.8) BS02 CLA ? GO:0009765 ... Q9SQL2 26023133
    308317 4xk8:4 (2.8) BS03 CLA ? GO:0009765 ... Q9SQL2 26023133
    308318 4xk8:4 (2.8) BS04 CLA ? GO:0009765 ... Q9SQL2 26023133
    308319 4xk8:4 (2.8) BS05 CLA ? GO:0009765 ... Q9SQL2 26023133
    308320 4xk8:4 (2.8) BS06 CLA ? GO:0009765 ... Q9SQL2 26023133
    308321 4xk8:4 (2.8) BS07 CHL ? GO:0009765 ... Q9SQL2 26023133
    308322 4xk8:4 (2.8) BS08 CHL ? GO:0009765 ... Q9SQL2 26023133
    308323 4xk8:4 (2.8) BS09 CHL ? GO:0009765 ... Q9SQL2 26023133
    308324 4xk8:4 (2.8) BS10 CLA ? GO:0009765 ... Q9SQL2 26023133
    308325 4xk8:4 (2.8) BS11 CLA ? GO:0009765 ... Q9SQL2 26023133
    308326 4xk8:4 (2.8) BS12 CLA ? GO:0009765 ... Q9SQL2 26023133
    308327 4xk8:4 (2.8) BS13 CLA ? GO:0009765 ... Q9SQL2 26023133
    308328 4xk8:4 (2.8) BS14 CLA ? GO:0009765 ... Q9SQL2 26023133
    308329 4xk8:4 (2.8) BS15 CLA ? GO:0009765 ... Q9SQL2 26023133
    308330 4xk8:4 (2.8) BS16 CLA ? GO:0009765 ... Q9SQL2 26023133
    308331 4xk8:4 (2.8) BS17 CHL ? GO:0009765 ... Q9SQL2 26023133
    308332 4xk8:6 (2.8) BS01 CLA ? GO:0009765 ... Q01667 26023133
    308333 4xk8:6 (2.8) BS02 CHL ? GO:0009765 ... Q01667 26023133
    308334 4xk8:6 (2.8) BS03 CLA ? GO:0009765 ... Q01667 26023133
    308335 4xk8:6 (2.8) BS04 CLA ? GO:0009765 ... Q01667 26023133
    308336 4xk8:6 (2.8) BS05 CLA ? GO:0009765 ... Q01667 26023133
    308337 4xk8:6 (2.8) BS06 CLA ? GO:0009765 ... Q01667 26023133
    308338 4xk8:6 (2.8) BS07 CHL ? GO:0009765 ... Q01667 26023133
    308339 4xk8:6 (2.8) BS08 CLA ? GO:0009765 ... Q01667 26023133
    308340 4xk8:6 (2.8) BS09 CLA ? GO:0009765 ... Q01667 26023133
    308341 4xk8:6 (2.8) BS10 CLA ? GO:0009765 ... Q01667 26023133
    308342 4xk8:6 (2.8) BS11 CLA ? GO:0009765 ... Q01667 26023133
    308343 4xk8:6 (2.8) BS12 CLA ? GO:0009765 ... Q01667 26023133
    308344 4xk8:6 (2.8) BS13 CLA ? GO:0009765 ... Q01667 26023133
    308345 4xk8:6 (2.8) BS14 CLA ? GO:0009765 ... Q01667 26023133
    308346 4xk8:7 (2.8) BS01 CHL ? GO:0009765 ... Q41038 26023133
    308347 4xk8:7 (2.8) BS02 CLA ? GO:0009765 ... Q41038 26023133
    308348 4xk8:7 (2.8) BS03 CLA ? GO:0009765 ... Q41038 26023133
    308349 4xk8:7 (2.8) BS04 CLA ? GO:0009765 ... Q41038 26023133
    308350 4xk8:7 (2.8) BS05 CHL ? GO:0009765 ... Q41038 26023133
    308351 4xk8:7 (2.8) BS06 CHL ? GO:0009765 ... Q41038 26023133
    308352 4xk8:7 (2.8) BS07 CHL ? GO:0009765 ... Q41038 26023133
    308353 4xk8:7 (2.8) BS08 CLA ? GO:0009765 ... Q41038 26023133
    308354 4xk8:7 (2.8) BS09 CLA ? GO:0009765 ... Q41038 26023133
    308355 4xk8:7 (2.8) BS10 CLA ? GO:0009765 ... Q41038 26023133
    308356 4xk8:7 (2.8) BS11 CLA ? GO:0009765 ... Q41038 26023133
    308357 4xk8:7 (2.8) BS12 CLA ? GO:0009765 ... Q41038 26023133
    308358 4xk8:7 (2.8) BS13 CLA ? GO:0009765 ... Q41038 26023133
    308359 4xk8:7 (2.8) BS14 CHL ? GO:0009765 ... Q41038 26023133
    308360 4xk8:7 (2.8) BS15 CLA ? GO:0009765 ... Q41038 26023133
    308361 4xk8:7 (2.8) BS16 CLA ? GO:0009765 ... Q41038 26023133
    308362 4xk8:8 (2.8) BS01 CLA ? GO:0009765 ... Q32904 26023133
    308363 4xk8:8 (2.8) BS02 CLA ? GO:0009765 ... Q32904 26023133
    308364 4xk8:8 (2.8) BS03 CHL ? GO:0009765 ... Q32904 26023133
    308365 4xk8:8 (2.8) BS04 CLA ? GO:0009765 ... Q32904 26023133
    308366 4xk8:8 (2.8) BS05 CLA ? GO:0009765 ... Q32904 26023133
    308367 4xk8:8 (2.8) BS06 CLA ? GO:0009765 ... Q32904 26023133
    308368 4xk8:8 (2.8) BS07 CLA ? GO:0009765 ... Q32904 26023133
    308369 4xk8:8 (2.8) BS08 CLA ? GO:0009765 ... Q32904 26023133
    308370 4xk8:8 (2.8) BS09 CHL ? GO:0009765 ... Q32904 26023133
    308371 4xk8:8 (2.8) BS10 CLA ? GO:0009765 ... Q32904 26023133
    308372 4xk8:8 (2.8) BS11 CLA ? GO:0009765 ... Q32904 26023133
    308373 4xk8:8 (2.8) BS12 CLA ? GO:0009765 ... Q32904 26023133
    308374 4xk8:8 (2.8) BS13 CLA ? GO:0009765 ... Q32904 26023133
    308375 4xk8:8 (2.8) BS14 CLA ? GO:0009765 ... Q32904 26023133
    308376 4xk8:8 (2.8) BS15 CLA ? GO:0009765 ... Q32904 26023133
    308377 4xk8:9 (2.8) BS01 CHL ? GO:0009765 ... Q9SQL2 26023133
    308378 4xk8:9 (2.8) BS02 CLA ? GO:0009765 ... Q9SQL2 26023133
    308379 4xk8:9 (2.8) BS03 CLA ? GO:0009765 ... Q9SQL2 26023133
    308380 4xk8:9 (2.8) BS04 CLA ? GO:0009765 ... Q9SQL2 26023133
    308381 4xk8:9 (2.8) BS05 CLA ? GO:0009765 ... Q9SQL2 26023133
    308382 4xk8:9 (2.8) BS06 CHL ? GO:0009765 ... Q9SQL2 26023133
    308383 4xk8:9 (2.8) BS07 CHL ? GO:0009765 ... Q9SQL2 26023133
    308384 4xk8:9 (2.8) BS08 CHL ? GO:0009765 ... Q9SQL2 26023133
    308385 4xk8:9 (2.8) BS09 CLA ? GO:0009765 ... Q9SQL2 26023133
    308386 4xk8:9 (2.8) BS10 CLA ? GO:0009765 ... Q9SQL2 26023133
    308387 4xk8:9 (2.8) BS11 CLA ? GO:0009765 ... Q9SQL2 26023133
    308388 4xk8:9 (2.8) BS12 CLA ? GO:0009765 ... Q9SQL2 26023133
    308389 4xk8:9 (2.8) BS13 CLA ? GO:0009765 ... Q9SQL2 26023133
    308390 4xk8:9 (2.8) BS14 CLA ? GO:0009765 ... Q9SQL2 26023133
    308391 4xk8:9 (2.8) BS15 CLA ? GO:0009765 ... Q9SQL2 26023133
    308392 4xk8:9 (2.8) BS16 CHL ? GO:0009765 ... Q9SQL2 26023133
    308393 4xk8:A (2.8) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308394 4xk8:A (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308395 4xk8:A (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308396 4xk8:A (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308397 4xk8:A (2.8) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308398 4xk8:A (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308399 4xk8:A (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    308400 4xk8:A (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 26023133

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).