SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    309201 4xqe:A (1.3) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309202 4xqe:A (1.3) BS03 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309203 4xqe:A (1.3) BS04 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309204 4xqe:A (1.3) BS05 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309205 4xqe:B (1.3) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309206 4xqe:B (1.3) BS02 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309207 4xqe:B (1.3) BS03 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309208 4xqe:B (1.3) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309209 4xqg:A (1.417) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309210 4xqg:A (1.417) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309211 4xqg:A (1.417) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309212 4xqg:A (1.417) BS04 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309213 4xqg:B (1.417) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309214 4xqg:B (1.417) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309215 4xqg:B (1.417) BS03 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309216 4xqg:B (1.417) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309217 4xqj:A (1.9) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309218 4xqj:A (1.9) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309219 4xqj:D (1.9) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309220 4xqj:D (1.9) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309221 4xqk:A (2.7) BS01 dna ? GO:0003677 ... A0A0M3KL05 26389736
    309222 4xqk:A (2.7) BS02 dna ? GO:0003677 ... A0A0M3KL05 26389736
    309223 4xqk:B (2.7) BS01 dna ? GO:0003677 ... A0A0M3KL05 26389736
    309224 4xqk:B (2.7) BS02 dna ? GO:0003677 ... A0A0M3KL05 26389736
    309225 4xqm:A (1.625) BS01 MAN 3.2.1.84 N/A Q9USH8 26062005
    309226 4xqn:A (2.3) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309227 4xqn:A (2.3) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309228 4xqn:D (2.3) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309229 4xqn:D (2.3) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309230 4xqn:G (2.3) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309231 4xqn:G (2.3) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309232 4xqn:G (2.3) BS03 dna ? GO:0000156 ... Q5HEG2 28955870
    309233 4xqn:J (2.3) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309234 4xqn:J (2.3) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309235 4xqn:J (2.3) BS03 dna ? GO:0000156 ... Q5HEG2 28955870
    309236 4xqn:J (2.3) BS04 dna ? GO:0000156 ... Q5HEG2 28955870
    309237 4xqo:A (2.85) BS01 GAL ? GO:0019031 ... A0A059T4A1 25766296
    309238 4xqo:A (2.85) BS02 SIA ? GO:0019031 ... A0A059T4A1 25766296
    309239 4xqo:C (2.85) BS01 SIA ? GO:0019031 ... A0A059T4A1 25766296
    309240 4xqq:B (3.05) BS01 dna ? GO:0000156 ... Q5HEG2 28955870
    309241 4xqq:B (3.05) BS02 dna ? GO:0000156 ... Q5HEG2 28955870
    309242 4xqu:A (3.25) BS01 GAL ? GO:0019031 ... A0A059T4A1 25766296
    309243 4xqu:A (3.25) BS02 SIA ? GO:0019031 ... A0A059T4A1 25766296
    309244 4xqu:C (3.25) BS01 SIA ? GO:0019031 ... A0A059T4A1 25766296
    309245 4xqu:E (3.25) BS01 SIA ? GO:0019031 ... A0A059T4A1 25766296
    309246 4xr0:A (2.8) BS01 dna ? GO:0003677 ... P16525 26322585
    309247 4xr0:A (2.8) BS02 dna ? GO:0003677 ... P16525 26322585
    309248 4xr1:A (2.4) BS01 dna ? GO:0003677 ... P16525 26322585
    309249 4xr1:A (2.4) BS02 dna ? GO:0003677 ... P16525 26322585
    309250 4xr2:A (2.35) BS01 dna ? GO:0003677 ... P16525 26322585
    309251 4xr2:A (2.35) BS02 dna ? GO:0003677 ... P16525 26322585
    309252 4xr3:A (2.7) BS01 dna ? GO:0003677 ... P16525 26322585
    309253 4xr3:A (2.7) BS02 dna ? GO:0003677 ... P16525 26322585
    309254 4xr4:A (1.626) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309255 4xr4:A (1.626) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309256 4xr4:A (1.626) BS03 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309257 4xr4:B (1.626) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309258 4xr4:B (1.626) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309259 4xr4:B (1.626) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309260 4xr4:B (1.626) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309261 4xr4:B (1.626) BS05 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309262 4xr4:B (1.626) BS06 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309263 4xr6:A (1.78) BS01 RAM ? N/A Q9AYY6 N/A
    309264 4xr6:A (1.78) BS02 GLC ? N/A Q9AYY6 N/A
    309265 4xr8:A (2.25) BS01 GLC ?
    2.3.2.26
    GO:0005515 ... P0AEX9
    Q05086
    26789255
    309266 4xr8:A (2.25) BS02 GLC ?
    2.3.2.26
    GO:0005515 ... P0AEX9
    Q05086
    26789255
    309267 4xr8:B (2.25) BS01 GLC ?
    2.3.2.26
    GO:0005515 ... P0AEX9
    Q05086
    26789255
    309268 4xr8:B (2.25) BS02 GLC ?
    2.3.2.26
    GO:0005515 ... P0AEX9
    Q05086
    26789255
    309269 4xr8:C (2.25) BS01 ZN ? GO:0000976 ... P04637 26789255
    309270 4xr8:D (2.25) BS01 ZN ? GO:0000976 ... P04637 26789255
    309271 4xr8:F (2.25) BS01 ZN ? GO:0003677 ... P03126 26789255
    309272 4xr8:F (2.25) BS02 ZN ? GO:0003677 ... P03126 26789255
    309273 4xr8:H (2.25) BS01 ZN ? GO:0003677 ... P03126 26789255
    309274 4xr8:H (2.25) BS02 ZN ? GO:0003677 ... P03126 26789255
    309275 4xr9:A (1.95) BS01 NAD ? GO:0000166 ... Q8KNF6 N/A
    309276 4xr9:A (1.95) BS02 TMP ? GO:0000166 ... Q8KNF6 N/A
    309277 4xrb:A (1.9) BS01 NDP ? GO:0000166 ... P71968 26848874
    309278 4xre:A (2.597) BS01 MAN ? GO:0003779 ... A4ZDL6 25139159
    309279 4xre:B (2.597) BS01 MAN ? GO:0003779 ... A4ZDL6 25139159
    309280 4xrf:A (2.16) BS01 ISQ ? GO:0003700 ... Q81HX3 N/A
    309281 4xrg:A (1.3) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309282 4xrg:A (1.3) BS02 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309283 4xrg:A (1.3) BS03 PUT 2.5.1.44 GO:0016740 ... O32323 26776105
    309284 4xrg:A (1.3) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309285 4xrg:A (1.3) BS05 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    309286 4xrg:B (1.3) BS01 NAD 2.5.1.44 GO:0016740 ... O32323 26776105
    309287 4xrg:B (1.3) BS02 AG2 2.5.1.44 GO:0016740 ... O32323 26776105
    309288 4xrg:B (1.3) BS03 PUT 2.5.1.44 GO:0016740 ... O32323 26776105
    309289 4xrh:A (3.0) BS01 MG 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    309290 4xrh:A (3.0) BS02 TTP 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    309291 4xrh:B (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    309292 4xrh:B (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    309293 4xrj:A (1.69) BS01 620 2.7.11.24 GO:0000165 ... P63086 26249358
    309294 4xrl:A (2.554) BS01 42A 2.7.11.24 GO:0000165 ... P63086 26249358
    309295 4xrm:A (1.6) BS01 dna ? GO:0003677 ... O14770 26550823
    309296 4xrm:A (1.6) BS02 dna ? GO:0003677 ... O14770 26550823
    309297 4xrm:B (1.6) BS01 dna ? GO:0003677 ... O14770 26550823
    309298 4xrm:B (1.6) BS02 dna ? GO:0003677 ... O14770 26550823
    309299 4xrn:A (2.0) BS01 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309300 4xrn:A (2.0) BS02 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309301 4xrn:B (2.0) BS01 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309302 4xrn:B (2.0) BS02 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309303 4xrn:C (2.0) BS01 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309304 4xrn:C (2.0) BS02 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309305 4xrn:C (2.0) BS03 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309306 4xrn:D (2.0) BS01 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309307 4xrn:D (2.0) BS02 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309308 4xrn:D (2.0) BS03 C2E 2.4.1.33 GO:0035438 ... Q9HY69 N/A
    309309 4xrp:A (3.3) BS01 MG ? GO:0047846 ... N/A 25882814
    309310 4xrp:D (3.3) BS01 MG ? GO:0047846 ... N/A 25882814
    309311 4xrq:A (1.95) BS01 1B0 ? GO:0016032 ... P12493 26109731 MOAD: Kd=0.232uM
    309312 4xrs:A (3.5) BS01 dna ? GO:0003677 ... O00470 26550823
    309313 4xrs:B (3.5) BS01 dna ? GO:0003677 ... O00470 26550823
    309314 4xrs:B (3.5) BS02 dna ? GO:0003677 ... O00470 26550823
    309315 4xrs:G (3.5) BS01 dna ? GO:0000981 ... O60479 26550823
    309316 4xrs:I (3.5) BS01 dna ? GO:0000981 ... O60479 26550823
    309317 4xrs:I (3.5) BS02 dna ? GO:0000981 ... O60479 26550823
    309318 4xru:A (3.41) BS01 MG ? GO:0047846 ... N/A 25882814
    309319 4xru:A (3.41) BS02 ATP ? GO:0047846 ... N/A 25882814
    309320 4xru:B (3.41) BS01 ATP ? N/A N/A 25882814
    309321 4xru:B (3.41) BS02 ATP ? N/A N/A 25882814
    309322 4xru:C (3.41) BS01 SAH 2.1.1.386 GO:0001510 ... N/A 25882814
    309323 4xru:D (3.41) BS01 MG ? GO:0047846 ... N/A 25882814
    309324 4xru:D (3.41) BS02 ATP ? GO:0047846 ... N/A 25882814
    309325 4xru:E (3.41) BS01 ATP ? N/A N/A 25882814
    309326 4xru:E (3.41) BS02 ATP ? N/A N/A 25882814
    309327 4xru:F (3.41) BS01 SAH 2.1.1.386 GO:0001510 ... N/A 25882814
    309328 4xrx:A (3.2) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 26280302
    309329 4xrx:A (3.2) BS02 42V 1.1.1.42 GO:0000287 ... O75874 26280302 BindingDB: Ki=1200nM
    309330 4xrx:B (3.2) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 26280302
    309331 4xry:A (2.5) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309332 4xry:A (2.5) BS02 SI5 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=13.9uM
    BindingDB: IC50=13900nM
    309333 4xry:A (2.5) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309334 4xry:A (2.5) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309335 4xry:B (2.5) BS01 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309336 4xry:B (2.5) BS02 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309337 4xry:B (2.5) BS03 SI5 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=13.9uM
    BindingDB: IC50=13900nM
    309338 4xry:B (2.5) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309339 4xry:C (2.5) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309340 4xry:C (2.5) BS02 SI5 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=13.9uM
    BindingDB: IC50=13900nM
    309341 4xry:C (2.5) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309342 4xry:C (2.5) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309343 4xry:D (2.5) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309344 4xry:D (2.5) BS02 SI5 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=13.9uM
    BindingDB: IC50=13900nM
    309345 4xry:D (2.5) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309346 4xry:D (2.5) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309347 4xrz:A (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309348 4xrz:A (2.4) BS02 SI6 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=0.37uM
    BindingDB: IC50=370nM
    309349 4xrz:A (2.4) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309350 4xrz:A (2.4) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309351 4xrz:B (2.4) BS01 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309352 4xrz:B (2.4) BS02 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309353 4xrz:B (2.4) BS03 SI6 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=0.37uM
    BindingDB: IC50=370nM
    309354 4xrz:B (2.4) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309355 4xrz:C (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309356 4xrz:C (2.4) BS02 SI6 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=0.37uM
    BindingDB: IC50=370nM
    309357 4xrz:C (2.4) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309358 4xrz:C (2.4) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309359 4xrz:D (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25781223
    309360 4xrz:D (2.4) BS02 SI6 1.14.14.- GO:0004497 ... P10635 25781223 MOAD: ic50=0.37uM
    BindingDB: IC50=370nM
    309361 4xrz:D (2.4) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309362 4xrz:D (2.4) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25781223
    309363 4xs0:A (2.55) BS01 HEM ? GO:0004601 ... P69905 26057669
    309364 4xs0:B (2.55) BS01 HEM ? GO:0004601 ... P68871 26057669
    309365 4xs2:A (2.73) BS01 42P 2.7.11.1 GO:0000287 ... Q9NWZ3 25870132
    309366 4xs2:B (2.73) BS01 42P 2.7.11.1 GO:0000287 ... Q9NWZ3 25870132
    309367 4xs2:C (2.73) BS01 42P 2.7.11.1 GO:0000287 ... Q9NWZ3 25870132
    309368 4xs2:D (2.73) BS01 42P 2.7.11.1 GO:0000287 ... Q9NWZ3 25870132
    309369 4xs3:A (3.291) BS01 42W 1.1.1.42 GO:0000287 ... O75874 26280302 BindingDB: Ki=32900nM
    309370 4xs3:A (3.291) BS02 NAP 1.1.1.42 GO:0000287 ... O75874 26280302
    309371 4xs3:B (3.291) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 26280302
    309372 4xs3:B (3.291) BS02 42W 1.1.1.42 GO:0000287 ... O75874 26280302 BindingDB: Ki=32900nM
    309373 4xs3:B (3.291) BS03 NAP 1.1.1.42 GO:0000287 ... O75874 26280302
    309374 4xs9:A (2.002) BS01 42X 2.3.1.- GO:0016746 ... Q54816 N/A
    309375 4xs9:B (2.002) BS01 42X 2.3.1.- GO:0016746 ... Q54816 N/A
    309376 4xsc:A (2.901) BS01 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309377 4xsc:A (2.901) BS02 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309378 4xsc:B (2.901) BS01 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309379 4xsc:B (2.901) BS02 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309380 4xsc:C (2.901) BS01 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309381 4xsc:C (2.901) BS02 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309382 4xsc:D (2.901) BS01 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309383 4xsc:D (2.901) BS02 BVP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309384 4xsd:A (2.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309385 4xsd:A (2.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309386 4xsd:B (2.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309387 4xsd:B (2.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309388 4xsd:C (2.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309389 4xsd:C (2.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309390 4xsd:D (2.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309391 4xsd:D (2.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q4JQW2 26630264
    309392 4xsg:A (1.8) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 26067270
    309393 4xsg:A (1.8) BS02 MG 3.6.5.2 GO:0000902 ... P61586 26067270
    309394 4xsh:A (2.5) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 26067270
    309395 4xsh:A (2.5) BS02 MG 3.6.5.2 GO:0000902 ... P61586 26067270
    309396 4xsh:B (2.5) BS01 NAI ? GO:0000166 ... Q8KNY0 26067270
    309397 4xsl:A (1.6) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    309398 4xsl:B (1.6) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    309399 4xsl:C (1.6) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    309400 4xsl:D (1.6) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).