SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    310801 4y4o:2Q (2.3) BS03 MG ? GO:0000049 ... P60489 25775268
    310802 4y4o:2Q (2.3) BS04 MG ? GO:0000049 ... P60489 25775268
    310803 4y4o:2R (2.3) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    310804 4y4o:2R (2.3) BS02 MG ? GO:0003735 ... Q9Z9H5 25775268
    310805 4y4o:2S (2.3) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    310806 4y4o:2S (2.3) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    310807 4y4o:2T (2.3) BS01 rna ? GO:0003735 ... P60490 25775268
    310808 4y4o:2T (2.3) BS02 rna ? GO:0003735 ... P60490 25775268
    310809 4y4o:2U (2.3) BS01 rna ? GO:0000027 ... P60491 25775268
    310810 4y4o:2U (2.3) BS02 MG ? GO:0000027 ... P60491 25775268
    310811 4y4o:2V (2.3) BS01 rna ? GO:0003723 ... P60492 25775268
    310812 4y4o:2V (2.3) BS02 MG ? GO:0003723 ... P60492 25775268
    310813 4y4o:2V (2.3) BS03 MG ? GO:0003723 ... P60492 25775268
    310814 4y4o:2W (2.3) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    310815 4y4o:2W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    310816 4y4o:2W (2.3) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    310817 4y4o:2X (2.3) BS01 rna ? GO:0003735 ... Q5SHP0 25775268
    310818 4y4o:2Y (2.3) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    310819 4y4o:2Y (2.3) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    310820 4y4o:2Z (2.3) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    310821 4y4o:2Z (2.3) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    310822 4y4o:2b (2.3) BS01 rna ? GO:0003735 ... P80371 25775268
    310823 4y4o:2c (2.3) BS01 rna ? GO:0003676 ... P80372 25775268
    310824 4y4o:2d (2.3) BS01 rna ? GO:0003723 ... P80373 25775268
    310825 4y4o:2d (2.3) BS02 SF4 ? GO:0003723 ... P80373 25775268
    310826 4y4o:2e (2.3) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    310827 4y4o:2e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    310828 4y4o:2f (2.3) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    310829 4y4o:2f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    310830 4y4o:2g (2.3) BS01 rna ? GO:0000049 ... P17291 25775268
    310831 4y4o:2h (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    310832 4y4o:2i (2.3) BS01 rna ? GO:0000049 ... P80374 25775268
    310833 4y4o:2j (2.3) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    310834 4y4o:2j (2.3) BS02 MG ? GO:0000049 ... Q5SHN7 25775268
    310835 4y4o:2k (2.3) BS01 rna ? GO:0003735 ... P80376 25775268
    310836 4y4o:2k (2.3) BS02 MG ? GO:0003735 ... P80376 25775268
    310837 4y4o:2l (2.3) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    310838 4y4o:2l (2.3) BS02 MG ? GO:0000049 ... Q5SHN3 25775268
    310839 4y4o:2m (2.3) BS01 rna ? GO:0000049 ... P80377 25775268
    310840 4y4o:2n (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    310841 4y4o:2n (2.3) BS02 ZN N/A GO:0003735 ... N/A 25775268
    310842 4y4o:2o (2.3) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    310843 4y4o:2o (2.3) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    310844 4y4o:2p (2.3) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    310845 4y4o:2q (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    310846 4y4o:2r (2.3) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    310847 4y4o:2s (2.3) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    310848 4y4o:2t (2.3) BS01 rna ? GO:0003723 ... P80380 25775268
    310849 4y4o:2t (2.3) BS02 MG ? GO:0003723 ... P80380 25775268
    310850 4y4o:2y (2.3) BS01 rna ? GO:0005515 ... P0AD49 25775268
    310851 4y4p:10 (2.5) BS01 rna ? GO:0003735 ... P60493 25775268
    310852 4y4p:10 (2.5) BS02 rna ? GO:0003735 ... P60493 25775268
    310853 4y4p:10 (2.5) BS03 MG ? GO:0003735 ... P60493 25775268
    310854 4y4p:10 (2.5) BS04 MG ? GO:0003735 ... P60493 25775268
    310855 4y4p:10 (2.5) BS05 MG ? GO:0003735 ... P60493 25775268
    310856 4y4p:11 (2.5) BS01 rna ? GO:0003735 ... P60494 25775268
    310857 4y4p:11 (2.5) BS02 MG ? GO:0003735 ... P60494 25775268
    310858 4y4p:12 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    310859 4y4p:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 25775268
    310860 4y4p:13 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    310861 4y4p:13 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    310862 4y4p:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    310863 4y4p:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 25775268
    310864 4y4p:13 (2.5) BS05 MG ? GO:0003735 ... Q5SHQ6 25775268
    310865 4y4p:14 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    310866 4y4p:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    310867 4y4p:15 (2.5) BS01 rna ? GO:0003735 ... P80339 25775268
    310868 4y4p:15 (2.5) BS02 ZN ? GO:0003735 ... P80339 25775268
    310869 4y4p:16 (2.5) BS01 rna ? GO:0000049 ... P35871 25775268
    310870 4y4p:16 (2.5) BS02 MG ? GO:0000049 ... P35871 25775268
    310871 4y4p:16 (2.5) BS03 ZN ? GO:0000049 ... P35871 25775268
    310872 4y4p:16 (2.5) BS04 MG ? GO:0000049 ... P35871 25775268
    310873 4y4p:17 (2.5) BS01 rna ? GO:0003735 ... P80340 25775268
    310874 4y4p:17 (2.5) BS02 MG ? GO:0003735 ... P80340 25775268
    310875 4y4p:17 (2.5) BS03 MG ? GO:0003735 ... P80340 25775268
    310876 4y4p:18 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    310877 4y4p:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 25775268
    310878 4y4p:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 25775268
    310879 4y4p:18 (2.5) BS04 MG ? GO:0003735 ... Q5SKU1 25775268
    310880 4y4p:19 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    310881 4y4p:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 25775268
    310882 4y4p:1D (2.5) BS01 rna ? GO:0002181 ... P60405 25775268
    310883 4y4p:1D (2.5) BS02 rna ? GO:0002181 ... P60405 25775268
    310884 4y4p:1D (2.5) BS03 MG ? GO:0002181 ... P60405 25775268
    310885 4y4p:1D (2.5) BS04 MG ? GO:0002181 ... P60405 25775268
    310886 4y4p:1D (2.5) BS05 MG ? GO:0002181 ... P60405 25775268
    310887 4y4p:1D (2.5) BS06 MG ? GO:0002181 ... P60405 25775268
    310888 4y4p:1D (2.5) BS07 MG ? GO:0002181 ... P60405 25775268
    310889 4y4p:1D (2.5) BS08 MG ? GO:0002181 ... P60405 25775268
    310890 4y4p:1D (2.5) BS09 MG ? GO:0002181 ... P60405 25775268
    310891 4y4p:1D (2.5) BS10 MG ? GO:0002181 ... P60405 25775268
    310892 4y4p:1D (2.5) BS11 MG ? GO:0002181 ... P60405 25775268
    310893 4y4p:1D (2.5) BS12 MG ? GO:0002181 ... P60405 25775268
    310894 4y4p:1E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    310895 4y4p:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    310896 4y4p:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 25775268
    310897 4y4p:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 25775268
    310898 4y4p:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 25775268
    310899 4y4p:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 25775268
    310900 4y4p:1F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    310901 4y4p:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    310902 4y4p:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    310903 4y4p:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    310904 4y4p:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 25775268
    310905 4y4p:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 25775268
    310906 4y4p:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 25775268
    310907 4y4p:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 25775268
    310908 4y4p:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 25775268
    310909 4y4p:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 25775268
    310910 4y4p:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 25775268
    310911 4y4p:1G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    310912 4y4p:1G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    310913 4y4p:1G (2.5) BS03 rna ? GO:0000049 ... Q5SHQ0 25775268
    310914 4y4p:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 25775268
    310915 4y4p:1H (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    310916 4y4p:1I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    310917 4y4p:1N (2.5) BS01 rna ? GO:0003729 ... P60488 25775268
    310918 4y4p:1N (2.5) BS02 MG ? GO:0003729 ... P60488 25775268
    310919 4y4p:1N (2.5) BS03 MG ? GO:0003729 ... P60488 25775268
    310920 4y4p:1N (2.5) BS04 MG ? GO:0003729 ... P60488 25775268
    310921 4y4p:1O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    310922 4y4p:1O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    310923 4y4p:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 25775268
    310924 4y4p:1O (2.5) BS04 MG ? GO:0003735 ... Q5SHP8 25775268
    310925 4y4p:1P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    310926 4y4p:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 25775268
    310927 4y4p:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 25775268
    310928 4y4p:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 25775268
    310929 4y4p:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 25775268
    310930 4y4p:1P (2.5) BS06 MG ? GO:0003735 ... Q5SHQ7 25775268
    310931 4y4p:1Q (2.5) BS01 rna ? GO:0000049 ... P60489 25775268
    310932 4y4p:1Q (2.5) BS02 rna ? GO:0000049 ... P60489 25775268
    310933 4y4p:1Q (2.5) BS03 rna ? GO:0000049 ... P60489 25775268
    310934 4y4p:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 25775268
    310935 4y4p:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 25775268
    310936 4y4p:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 25775268
    310937 4y4p:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 25775268
    310938 4y4p:1R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    310939 4y4p:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 25775268
    310940 4y4p:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 25775268
    310941 4y4p:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 25775268
    310942 4y4p:1S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    310943 4y4p:1S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    310944 4y4p:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 25775268
    310945 4y4p:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 25775268
    310946 4y4p:1T (2.5) BS01 rna ? GO:0003735 ... P60490 25775268
    310947 4y4p:1T (2.5) BS02 rna ? GO:0003735 ... P60490 25775268
    310948 4y4p:1T (2.5) BS03 MG ? GO:0003735 ... P60490 25775268
    310949 4y4p:1U (2.5) BS01 rna ? GO:0000027 ... P60491 25775268
    310950 4y4p:1U (2.5) BS02 MG ? GO:0000027 ... P60491 25775268
    310951 4y4p:1U (2.5) BS03 MG ? GO:0000027 ... P60491 25775268
    310952 4y4p:1U (2.5) BS04 MG ? GO:0000027 ... P60491 25775268
    310953 4y4p:1U (2.5) BS05 MG ? GO:0000027 ... P60491 25775268
    310954 4y4p:1U (2.5) BS06 MG ? GO:0000027 ... P60491 25775268
    310955 4y4p:1U (2.5) BS07 MG ? GO:0000027 ... P60491 25775268
    310956 4y4p:1U (2.5) BS08 MG ? GO:0000027 ... P60491 25775268
    310957 4y4p:1V (2.5) BS01 rna ? GO:0003723 ... P60492 25775268
    310958 4y4p:1V (2.5) BS02 MG ? GO:0003723 ... P60492 25775268
    310959 4y4p:1V (2.5) BS03 MG ? GO:0003723 ... P60492 25775268
    310960 4y4p:1V (2.5) BS04 MG ? GO:0003723 ... P60492 25775268
    310961 4y4p:1V (2.5) BS05 MG ? GO:0003723 ... P60492 25775268
    310962 4y4p:1V (2.5) BS06 MG ? GO:0003723 ... P60492 25775268
    310963 4y4p:1V (2.5) BS07 MG ? GO:0003723 ... P60492 25775268
    310964 4y4p:1V (2.5) BS08 MG ? GO:0003723 ... P60492 25775268
    310965 4y4p:1W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    310966 4y4p:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    310967 4y4p:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    310968 4y4p:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 25775268
    310969 4y4p:1W (2.5) BS05 MG ? GO:0003735 ... Q5SHP3 25775268
    310970 4y4p:1W (2.5) BS06 MG ? GO:0003735 ... Q5SHP3 25775268
    310971 4y4p:1X (2.5) BS01 rna ? GO:0003735 ... Q5SHP0 25775268
    310972 4y4p:1X (2.5) BS02 MG ? GO:0003735 ... Q5SHP0 25775268
    310973 4y4p:1X (2.5) BS03 MG ? GO:0003735 ... Q5SHP0 25775268
    310974 4y4p:1X (2.5) BS04 MG ? GO:0003735 ... Q5SHP0 25775268
    310975 4y4p:1X (2.5) BS05 MG ? GO:0003735 ... Q5SHP0 25775268
    310976 4y4p:1X (2.5) BS06 MG ? GO:0003735 ... Q5SHP0 25775268
    310977 4y4p:1Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    310978 4y4p:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    310979 4y4p:1Y (2.5) BS03 MG ? GO:0003723 ... Q5SHP9 25775268
    310980 4y4p:1Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    310981 4y4p:1Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    310982 4y4p:1Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 25775268
    310983 4y4p:1b (2.5) BS01 rna ? GO:0003735 ... P80371 25775268
    310984 4y4p:1b (2.5) BS02 MG ? GO:0003735 ... P80371 25775268
    310985 4y4p:1c (2.5) BS01 rna ? GO:0003676 ... P80372 25775268
    310986 4y4p:1d (2.5) BS01 rna ? GO:0003723 ... P80373 25775268
    310987 4y4p:1d (2.5) BS02 SF4 ? GO:0003723 ... P80373 25775268
    310988 4y4p:1e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    310989 4y4p:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    310990 4y4p:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 25775268
    310991 4y4p:1f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    310992 4y4p:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    310993 4y4p:1g (2.5) BS01 rna ? GO:0000049 ... P17291 25775268
    310994 4y4p:1g (2.5) BS02 rna ? GO:0000049 ... P17291 25775268
    310995 4y4p:1h (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    310996 4y4p:1i (2.5) BS01 rna ? GO:0000049 ... P80374 25775268
    310997 4y4p:1i (2.5) BS02 rna ? GO:0000049 ... P80374 25775268
    310998 4y4p:1j (2.5) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    310999 4y4p:1k (2.5) BS01 rna ? GO:0003735 ... P80376 25775268
    311000 4y4p:1k (2.5) BS02 MG ? GO:0003735 ... P80376 25775268

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).