SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    311001 4y4p:1l (2.5) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    311002 4y4p:1l (2.5) BS02 rna ? GO:0000049 ... Q5SHN3 25775268
    311003 4y4p:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 25775268
    311004 4y4p:1m (2.5) BS01 rna ? GO:0000049 ... P80377 25775268
    311005 4y4p:1m (2.5) BS02 rna ? GO:0000049 ... P80377 25775268
    311006 4y4p:1m (2.5) BS03 MG ? GO:0000049 ... P80377 25775268
    311007 4y4p:1n (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    311008 4y4p:1n (2.5) BS02 ZN N/A GO:0003735 ... N/A 25775268
    311009 4y4p:1o (2.5) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    311010 4y4p:1o (2.5) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    311011 4y4p:1p (2.5) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    311012 4y4p:1q (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    311013 4y4p:1r (2.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    311014 4y4p:1s (2.5) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    311015 4y4p:1t (2.5) BS01 rna ? GO:0003723 ... P80380 25775268
    311016 4y4p:1t (2.5) BS02 MG ? GO:0003723 ... P80380 25775268
    311017 4y4p:20 (2.5) BS01 rna ? GO:0003735 ... P60493 25775268
    311018 4y4p:20 (2.5) BS02 rna ? GO:0003735 ... P60493 25775268
    311019 4y4p:21 (2.5) BS01 rna ? GO:0003735 ... P60494 25775268
    311020 4y4p:21 (2.5) BS02 MG ? GO:0003735 ... P60494 25775268
    311021 4y4p:22 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    311022 4y4p:23 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    311023 4y4p:23 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    311024 4y4p:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    311025 4y4p:24 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    311026 4y4p:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    311027 4y4p:25 (2.5) BS01 rna ? GO:0003735 ... P80339 25775268
    311028 4y4p:25 (2.5) BS02 ZN ? GO:0003735 ... P80339 25775268
    311029 4y4p:25 (2.5) BS03 MG ? GO:0003735 ... P80339 25775268
    311030 4y4p:26 (2.5) BS01 rna ? GO:0000049 ... P35871 25775268
    311031 4y4p:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 25775268
    311032 4y4p:27 (2.5) BS01 rna ? GO:0003735 ... P80340 25775268
    311033 4y4p:28 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    311034 4y4p:29 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    311035 4y4p:29 (2.5) BS02 MG ? GO:0003735 ... Q5SHR2 25775268
    311036 4y4p:29 (2.5) BS03 ZN ? GO:0003735 ... Q5SHR2 25775268
    311037 4y4p:2D (2.5) BS01 rna ? GO:0002181 ... P60405 25775268
    311038 4y4p:2D (2.5) BS02 rna ? GO:0002181 ... P60405 25775268
    311039 4y4p:2D (2.5) BS03 MG ? GO:0002181 ... P60405 25775268
    311040 4y4p:2D (2.5) BS04 MG ? GO:0002181 ... P60405 25775268
    311041 4y4p:2D (2.5) BS05 MG ? GO:0002181 ... P60405 25775268
    311042 4y4p:2D (2.5) BS06 MG ? GO:0002181 ... P60405 25775268
    311043 4y4p:2D (2.5) BS07 MG ? GO:0002181 ... P60405 25775268
    311044 4y4p:2D (2.5) BS08 MG ? GO:0002181 ... P60405 25775268
    311045 4y4p:2E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    311046 4y4p:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    311047 4y4p:2F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    311048 4y4p:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    311049 4y4p:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    311050 4y4p:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    311051 4y4p:2G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    311052 4y4p:2G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    311053 4y4p:2G (2.5) BS03 rna ? GO:0000049 ... Q5SHQ0 25775268
    311054 4y4p:2H (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    311055 4y4p:2I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    311056 4y4p:2N (2.5) BS01 rna ? GO:0003729 ... P60488 25775268
    311057 4y4p:2O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    311058 4y4p:2O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    311059 4y4p:2P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    311060 4y4p:2Q (2.5) BS01 rna ? GO:0000049 ... P60489 25775268
    311061 4y4p:2Q (2.5) BS02 rna ? GO:0000049 ... P60489 25775268
    311062 4y4p:2Q (2.5) BS03 rna ? GO:0000049 ... P60489 25775268
    311063 4y4p:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 25775268
    311064 4y4p:2Q (2.5) BS05 MG ? GO:0000049 ... P60489 25775268
    311065 4y4p:2Q (2.5) BS06 MG ? GO:0000049 ... P60489 25775268
    311066 4y4p:2R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    311067 4y4p:2S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    311068 4y4p:2S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    311069 4y4p:2T (2.5) BS01 rna ? GO:0003735 ... P60490 25775268
    311070 4y4p:2T (2.5) BS02 rna ? GO:0003735 ... P60490 25775268
    311071 4y4p:2U (2.5) BS01 rna ? GO:0000027 ... P60491 25775268
    311072 4y4p:2U (2.5) BS02 MG ? GO:0000027 ... P60491 25775268
    311073 4y4p:2U (2.5) BS03 MG ? GO:0000027 ... P60491 25775268
    311074 4y4p:2U (2.5) BS04 MG ? GO:0000027 ... P60491 25775268
    311075 4y4p:2V (2.5) BS01 rna ? GO:0003723 ... P60492 25775268
    311076 4y4p:2V (2.5) BS02 MG ? GO:0003723 ... P60492 25775268
    311077 4y4p:2V (2.5) BS03 MG ? GO:0003723 ... P60492 25775268
    311078 4y4p:2W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    311079 4y4p:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    311080 4y4p:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    311081 4y4p:2X (2.5) BS01 rna ? GO:0003735 ... Q5SHP0 25775268
    311082 4y4p:2X (2.5) BS02 MG ? GO:0003735 ... Q5SHP0 25775268
    311083 4y4p:2Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    311084 4y4p:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    311085 4y4p:2Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    311086 4y4p:2Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    311087 4y4p:2Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 25775268
    311088 4y4p:2b (2.5) BS01 rna ? GO:0003735 ... P80371 25775268
    311089 4y4p:2c (2.5) BS01 rna ? GO:0003676 ... P80372 25775268
    311090 4y4p:2d (2.5) BS01 rna ? GO:0003723 ... P80373 25775268
    311091 4y4p:2d (2.5) BS02 SF4 ? GO:0003723 ... P80373 25775268
    311092 4y4p:2d (2.5) BS03 MG ? GO:0003723 ... P80373 25775268
    311093 4y4p:2e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    311094 4y4p:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    311095 4y4p:2f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    311096 4y4p:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    311097 4y4p:2g (2.5) BS01 rna ? GO:0000049 ... P17291 25775268
    311098 4y4p:2g (2.5) BS02 rna ? GO:0000049 ... P17291 25775268
    311099 4y4p:2h (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    311100 4y4p:2i (2.5) BS01 rna ? GO:0000049 ... P80374 25775268
    311101 4y4p:2i (2.5) BS02 rna ? GO:0000049 ... P80374 25775268
    311102 4y4p:2j (2.5) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    311103 4y4p:2k (2.5) BS01 rna ? GO:0003735 ... P80376 25775268
    311104 4y4p:2k (2.5) BS02 MG ? GO:0003735 ... P80376 25775268
    311105 4y4p:2l (2.5) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    311106 4y4p:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 25775268
    311107 4y4p:2m (2.5) BS01 rna ? GO:0000049 ... P80377 25775268
    311108 4y4p:2m (2.5) BS02 rna ? GO:0000049 ... P80377 25775268
    311109 4y4p:2n (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    311110 4y4p:2n (2.5) BS02 ZN N/A GO:0003735 ... N/A 25775268
    311111 4y4p:2o (2.5) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    311112 4y4p:2o (2.5) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    311113 4y4p:2p (2.5) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    311114 4y4p:2q (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    311115 4y4p:2q (2.5) BS02 MG N/A GO:0003735 ... N/A 25775268
    311116 4y4p:2q (2.5) BS03 MG N/A GO:0003735 ... N/A 25775268
    311117 4y4p:2r (2.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    311118 4y4p:2r (2.5) BS02 MG ? GO:0003735 ... Q5SLQ0 25775268
    311119 4y4p:2s (2.5) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    311120 4y4p:2t (2.5) BS01 rna ? GO:0003723 ... P80380 25775268
    311121 4y4p:2t (2.5) BS02 MG ? GO:0003723 ... P80380 25775268
    311122 4y4s:A (1.75) BS01 HEM ? GO:0046872 ... Q66G68 26210321
    311123 4y4t:A (1.301) BS01 46X 3.4.23.22 GO:0004190 ... P11838 N/A
    311124 4y4t:A (1.301) BS02 46X 3.4.23.22 GO:0004190 ... P11838 N/A
    311125 4y4u:A (1.754) BS01 46V 3.4.23.22 GO:0004190 ... P11838 N/A
    311126 4y4v:A (2.04) BS01 DAL ? GO:0004175 ... O25255 26306031 MOAD: Kd=224uM
    311127 4y4v:A (2.04) BS02 DAL ? GO:0004175 ... O25255 26306031 MOAD: Kd=224uM
    311128 4y4v:B (2.04) BS01 DAL ? GO:0004175 ... O25255 26306031 MOAD: Kd=224uM
    311129 4y4w:A (1.451) BS01 46W 3.4.23.22 GO:0004190 ... P11838 N/A
    311130 4y4w:A (1.451) BS02 46W 3.4.23.22 GO:0004190 ... P11838 N/A
    311131 4y4x:A (1.67) BS01 47Q 3.4.23.22 GO:0004190 ... P11838 N/A
    311132 4y4z:A (1.48) BS01 47R 3.4.23.22 GO:0004190 ... P11838 N/A
    311133 4y50:A (1.32) BS01 47S 3.4.23.22 GO:0004190 ... P11838 N/A
    311134 4y51:A (1.603) BS01 47A 3.4.23.22 GO:0004190 ... P11838 N/A
    311135 4y52:A (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P04050 26123024
    311136 4y52:A (3.5) BS02 rna 2.7.7.6 GO:0000428 ... P04050 26123024
    311137 4y52:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 26123024
    311138 4y52:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... P04050 26123024
    311139 4y52:B (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P08518 26123024
    311140 4y52:B (3.5) BS02 rna 2.7.7.6 GO:0000428 ... P08518 26123024
    311141 4y52:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 26123024
    311142 4y52:C (3.5) BS01 ZN ? GO:0000428 ... P16370 26123024
    311143 4y52:E (3.5) BS01 dna ? GO:0000428 ... P20434 26123024
    311144 4y52:I (3.5) BS01 ZN ? GO:0000428 ... P27999 26123024
    311145 4y52:I (3.5) BS02 ZN ? GO:0000428 ... P27999 26123024
    311146 4y52:J (3.5) BS01 ZN ? GO:0000428 ... P22139 26123024
    311147 4y52:L (3.5) BS01 ZN ? GO:0000428 ... P40422 26123024
    311148 4y53:A (1.62) BS01 47B 3.4.23.22 GO:0004190 ... P11838 N/A
    311149 4y53:A (1.62) BS02 47B 3.4.23.22 GO:0004190 ... P11838 N/A
    311150 4y54:A (1.61) BS01 47E 3.4.23.22 GO:0004190 ... P11838 N/A
    311151 4y55:A (2.1) BS01 CA 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    311152 4y55:A (2.1) BS02 HEM 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    311153 4y56:A (1.63) BS01 47J 3.4.23.22 GO:0004190 ... P11838 N/A
    311154 4y57:A (1.49) BS01 F63 3.4.23.22 GO:0004190 ... P11838 N/A
    311155 4y58:A (1.17) BS01 47L 3.4.23.22 GO:0004190 ... P11838 N/A
    311156 4y59:A (1.22) BS01 T21 ? GO:0009374 ... P22629 26261872 MOAD: Kd=5.8uM
    311157 4y59:B (1.22) BS01 T21 ? GO:0009374 ... P22629 26261872 MOAD: Kd=5.8uM
    311158 4y59:C (1.22) BS01 T21 ? GO:0009374 ... P22629 26261872 MOAD: Kd=5.8uM
    311159 4y59:D (1.22) BS01 T21 ? GO:0009374 ... P22629 26261872 MOAD: Kd=5.8uM
    311160 4y5a:A (1.45) BS01 47M 3.4.23.22 GO:0004190 ... P11838 N/A
    311161 4y5b:A (1.24) BS01 47P 3.4.23.22 GO:0004190 ... P11838 N/A
    311162 4y5b:A (1.24) BS02 47P 3.4.23.22 GO:0004190 ... P11838 N/A
    311163 4y5b:A (1.24) BS03 47P 3.4.23.22 GO:0004190 ... P11838 N/A
    311164 4y5c:A (1.19) BS01 47V 3.4.23.22 GO:0004190 ... P11838 N/A
    311165 4y5d:A (1.2) BS01 MT6 ? GO:0009374 ... P22629 26261872 MOAD: Kd=1.2uM
    311166 4y5d:B (1.2) BS01 MT6 ? GO:0009374 ... P22629 26261872 MOAD: Kd=1.2uM
    311167 4y5d:D (1.2) BS01 MT6 ? GO:0009374 ... P22629 26261872 MOAD: Kd=1.2uM
    311168 4y5e:A (1.116) BS01 47T 3.4.23.22 GO:0004190 ... P11838 N/A
    311169 4y5f:A (1.7) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 25650486
    311170 4y5g:A (1.47) BS01 47U 3.4.23.22 GO:0004190 ... P11838 N/A
    311171 4y5h:A (2.055) BS01 519 2.7.11.24 GO:0004672 ... P53779 25893042 MOAD: ic50=15nM
    BindingDB: IC50=15nM
    311172 4y5i:A (1.4) BS01 peptide ? GO:0000122 ... P31947 26537010
    311173 4y5i:B (1.4) BS01 peptide ? GO:0000122 ... P31947 26537010
    311174 4y5k:A (1.439) BS01 489 3.4.23.22 GO:0004190 ... P11838 N/A
    311175 4y5m:A (1.28) BS01 47Y 3.4.23.22 GO:0004190 ... P11838 N/A
    311176 4y5m:A (1.28) BS02 47Y 3.4.23.22 GO:0004190 ... P11838 N/A
    311177 4y5n:A (1.29) BS01 487 3.4.23.22 GO:0004190 ... P11838 N/A
    311178 4y5p:A (1.229) BS01 483 3.4.23.22 GO:0004190 ... P11838 N/A
    311179 4y5q:A (2.0) BS01 CA ? GO:0004672 ... A3FQ16 N/A
    311180 4y5q:A (2.0) BS02 CA ? GO:0004672 ... A3FQ16 N/A
    311181 4y5q:A (2.0) BS03 CA ? GO:0004672 ... A3FQ16 N/A
    311182 4y5q:A (2.0) BS04 CA ? GO:0004672 ... A3FQ16 N/A
    311183 4y5q:A (2.0) BS05 AMP ? GO:0004672 ... A3FQ16 N/A
    311184 4y5r:A (2.8) BS01 CA 1.-.-.- GO:0004130 ... Q51658 25896561
    311185 4y5r:A (2.8) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    311186 4y5r:A (2.8) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    311187 4y5r:B (2.8) BS01 CA 1.-.-.- GO:0004130 ... Q51658 25896561
    311188 4y5r:B (2.8) BS02 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    311189 4y5r:B (2.8) BS03 HEC 1.-.-.- GO:0004130 ... Q51658 25896561
    311190 4y5s:A (2.543) BS01 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311191 4y5s:A (2.543) BS02 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311192 4y5s:B (2.543) BS01 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311193 4y5s:B (2.543) BS02 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311194 4y5s:B (2.543) BS03 CO 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311195 4y5t:A (1.949) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311196 4y5t:B (1.949) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311197 4y5t:B (1.949) BS02 CO 1.14.11.38 GO:0005575 ... Q4WAW9 26524521
    311198 4y5w:A (3.104) BS01 dna ? GO:0003677 ... P42226 27803324
    311199 4y5w:A (3.104) BS02 dna ? GO:0003677 ... P42226 27803324
    311200 4y5w:B (3.104) BS01 dna ? GO:0003677 ... P42226 27803324

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).