SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    311401 4y7e:A (1.5) BS02 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311402 4y7e:A (1.5) BS03 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311403 4y7e:A (1.5) BS04 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311404 4y7e:A (1.5) BS05 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311405 4y7e:A (1.5) BS06 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311406 4y7e:A (1.5) BS07 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311407 4y7e:A (1.5) BS08 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311408 4y7e:A (1.5) BS09 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311409 4y7e:A (1.5) BS10 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311410 4y7e:A (1.5) BS11 CA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311411 4y7e:A (1.5) BS12 CA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311412 4y7e:B (1.5) BS01 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311413 4y7e:B (1.5) BS02 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311414 4y7e:B (1.5) BS03 CA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311415 4y7e:B (1.5) BS04 CA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    311416 4y7f:A (3.231) BS01 MN 2.4.1.266 GO:0000287 ... P9WMW9 26136334
    311417 4y7f:A (3.231) BS02 48X 2.4.1.266 GO:0000287 ... P9WMW9 26136334
    311418 4y7f:A (3.231) BS03 UPG 2.4.1.266 GO:0000287 ... P9WMW9 26136334
    311419 4y7g:A (2.59) BS01 MN 2.4.1.266 GO:0000287 ... P9WMW9 26136334
    311420 4y7g:A (2.59) BS02 G3P 2.4.1.266 GO:0000287 ... P9WMW9 26136334
    311421 4y7g:A (2.59) BS03 UPG 2.4.1.266 GO:0000287 ... P9WMW9 26136334
    311422 4y7l:A (1.51) BS01 ZN ? GO:0046872 ... A0A0M3KL15 26200339
    311423 4y7n:A (3.3) BS01 dna 2.7.7.6 GO:0000428 ... P04050 26123024
    311424 4y7n:A (3.3) BS02 rna 2.7.7.6 GO:0000428 ... P04050 26123024
    311425 4y7n:A (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 26123024
    311426 4y7n:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 26123024
    311427 4y7n:A (3.3) BS05 MG 2.7.7.6 GO:0000428 ... P04050 26123024
    311428 4y7n:A (3.3) BS06 G2P 2.7.7.6 GO:0000428 ... P04050 26123024
    311429 4y7n:B (3.3) BS01 dna 2.7.7.6 GO:0000428 ... P08518 26123024
    311430 4y7n:B (3.3) BS02 rna 2.7.7.6 GO:0000428 ... P08518 26123024
    311431 4y7n:B (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 26123024
    311432 4y7n:C (3.3) BS01 ZN ? GO:0000428 ... P16370 26123024
    311433 4y7n:E (3.3) BS01 dna ? GO:0000428 ... P20434 26123024
    311434 4y7n:I (3.3) BS01 ZN ? GO:0000428 ... P27999 26123024
    311435 4y7n:I (3.3) BS02 ZN ? GO:0000428 ... P27999 26123024
    311436 4y7n:J (3.3) BS01 ZN ? GO:0000428 ... P22139 26123024
    311437 4y7n:L (3.3) BS01 ZN ? GO:0000428 ... P40422 26123024
    311438 4y7o:A (2.24) BS01 ZN ? GO:0046872 ... A0A0M3KL17 26200339
    311439 4y7o:A (2.24) BS02 ZN ? GO:0046872 ... A0A0M3KL17 26200339
    311440 4y7o:B (2.24) BS01 ZN ? GO:0046872 ... A0A0M3KL17 26200339
    311441 4y7r:A (1.898) BS01 peptide ? GO:0000122 ... P61964 25818646
    311442 4y7s:A (2.0) BS01 HEB ? N/A Q5A0X8 27617569
    311443 4y7s:B (2.0) BS01 HEB ? N/A Q5A0X8 27617569
    311444 4y7s:C (2.0) BS01 HEB ? N/A Q5A0X8 27617569
    311445 4y7u:A (1.7) BS01 MG 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    311446 4y7u:A (1.7) BS02 2KH 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    311447 4y7u:A (1.7) BS03 491 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    311448 4y7v:A (1.8) BS01 491 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    311449 4y7v:A (1.8) BS02 2PN 2.7.7.99 GO:0000287 ... Q88QT2 25767118
    311450 4y7w:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311451 4y7w:H (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311452 4y7w:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311453 4y7w:K (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311454 4y7w:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311455 4y7w:N (2.5) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311456 4y7w:N (2.5) BS02 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311457 4y7w:N (2.5) BS03 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311458 4y7w:V (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311459 4y7w:V (2.5) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311460 4y7w:V (2.5) BS03 MG 3.4.25.1 GO:0004298 ... P25043 26020686
    311461 4y7w:Y (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311462 4y7w:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311463 4y7w:b (2.5) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311464 4y7w:b (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311465 4y7x:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311466 4y7x:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311467 4y7x:K (2.6) BS01 peptide 3.4.25.1 N/A P30656 26020686
    311468 4y7x:K (2.6) BS02 peptide 3.4.25.1 N/A P30656 26020686
    311469 4y7x:K (2.6) BS03 MG 3.4.25.1 N/A P30656 26020686
    311470 4y7x:N (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311471 4y7x:V (2.6) BS01 MG 3.4.25.1 N/A P25043 26020686
    311472 4y7x:Y (2.6) BS01 peptide 3.4.25.1 N/A P30656 26020686
    311473 4y7x:Y (2.6) BS02 MG 3.4.25.1 N/A P30656 26020686
    311474 4y7x:Y (2.6) BS03 MG 3.4.25.1 N/A P30656 26020686
    311475 4y7x:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311476 4y7y:G (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311477 4y7y:H (2.4) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311478 4y7y:I (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311479 4y7y:K (2.4) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311480 4y7y:K (2.4) BS02 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311481 4y7y:K (2.4) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311482 4y7y:N (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311483 4y7y:V (2.4) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311484 4y7y:V (2.4) BS02 MG 3.4.25.1 GO:0004298 ... P25043 26020686
    311485 4y7y:Y (2.4) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311486 4y7y:Y (2.4) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311487 4y7y:Y (2.4) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311488 4y7y:Z (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311489 4y80:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311490 4y80:H (2.5) BS01 peptide 3.4.25.1 N/A P25043 26020686
    311491 4y80:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311492 4y80:K (2.5) BS01 peptide 3.4.25.1 N/A P30656 26020686
    311493 4y80:K (2.5) BS02 MG 3.4.25.1 N/A P30656 26020686
    311494 4y80:N (2.5) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311495 4y80:N (2.5) BS02 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311496 4y80:N (2.5) BS03 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311497 4y80:V (2.5) BS01 peptide 3.4.25.1 N/A P25043 26020686
    311498 4y80:V (2.5) BS02 MG 3.4.25.1 N/A P25043 26020686
    311499 4y80:Y (2.5) BS01 peptide 3.4.25.1 N/A P30656 26020686
    311500 4y80:Y (2.5) BS02 MG 3.4.25.1 N/A P30656 26020686
    311501 4y80:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311502 4y80:b (2.5) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311503 4y80:b (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311504 4y81:C (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P40303 26020686
    311505 4y81:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311506 4y81:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311507 4y81:K (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311508 4y81:K (2.8) BS02 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311509 4y81:K (2.8) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311510 4y81:N (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311511 4y81:N (2.8) BS02 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311512 4y81:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26020686
    311513 4y81:Y (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311514 4y81:Y (2.8) BS02 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311515 4y81:Y (2.8) BS03 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311516 4y81:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311517 4y81:b (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311518 4y81:b (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311519 4y82:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311520 4y82:H (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311521 4y82:I (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P25451 26020686
    311522 4y82:I (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311523 4y82:K (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311524 4y82:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311525 4y82:N (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311526 4y82:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311527 4y82:V (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311528 4y82:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 26020686
    311529 4y82:Y (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311530 4y82:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311531 4y82:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311532 4y82:b (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311533 4y83:A (2.89) BS01 49B 2.7.11.25 GO:0004672 ... P41279 25918157
    311534 4y83:B (2.89) BS01 49B 2.7.11.25 GO:0004672 ... P41279 25918157
    311535 4y83:C (2.89) BS01 49B 2.7.11.25 GO:0004672 ... P41279 25918157
    311536 4y84:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311537 4y84:H (2.7) BS01 peptide 3.4.25.1 N/A P25043 26020686
    311538 4y84:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311539 4y84:K (2.7) BS01 peptide 3.4.25.1 N/A P30656 26020686
    311540 4y84:K (2.7) BS02 MG 3.4.25.1 N/A P30656 26020686
    311541 4y84:N (2.7) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311542 4y84:N (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311543 4y84:V (2.7) BS01 peptide 3.4.25.1 N/A P25043 26020686
    311544 4y84:V (2.7) BS02 MG 3.4.25.1 N/A P25043 26020686
    311545 4y84:Y (2.7) BS01 peptide 3.4.25.1 N/A P30656 26020686
    311546 4y84:Y (2.7) BS02 MG 3.4.25.1 N/A P30656 26020686
    311547 4y84:Z (2.7) BS01 peptide 3.4.25.1 GO:0000502 ... P23724 26020686
    311548 4y84:Z (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311549 4y84:b (2.7) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311550 4y85:A (2.33) BS01 499 2.7.11.25 GO:0004672 ... P41279 25918157 MOAD: ic50=13nM
    311551 4y85:B (2.33) BS01 499 2.7.11.25 GO:0004672 ... P41279 25918157 MOAD: ic50=13nM
    311552 4y85:C (2.33) BS01 499 2.7.11.25 GO:0004672 ... P41279 25918157 MOAD: ic50=13nM
    311553 4y86:A (2.01) BS01 49D 3.1.4.35 GO:0004114 ... O76083 26316540 MOAD: ic50=11nM
    BindingDB: IC50=6.00nM
    311554 4y86:A (2.01) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 26316540
    311555 4y86:B (2.01) BS01 49E 3.1.4.35 GO:0004114 ... O76083 26316540 MOAD: ic50=58nM
    311556 4y86:B (2.01) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 26316540
    311557 4y87:A (3.1) BS01 49E 3.1.4.35 GO:0004114 ... O76083 26316540
    311558 4y87:A (3.1) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 26316540
    311559 4y87:B (3.1) BS01 49E 3.1.4.35 GO:0004114 ... O76083 26316540
    311560 4y87:B (3.1) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 26316540
    311561 4y88:A (1.45) BS01 PDO ? N/A P31997 26483485
    311562 4y8a:A (1.83) BS01 ZN ? N/A P40199 26483485
    311563 4y8a:B (1.83) BS01 ZN ? N/A P40199 26483485
    311564 4y8c:A (2.7) BS01 49D 3.1.4.35 GO:0004114 ... O76083 26316540 BindingDB: IC50=6.00nM
    311565 4y8c:A (2.7) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 26316540
    311566 4y8c:B (2.7) BS01 49D 3.1.4.35 GO:0004114 ... O76083 26316540 BindingDB: IC50=6.00nM
    311567 4y8c:B (2.7) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 26316540
    311568 4y8d:A (2.1) BS01 49J 2.7.11.1 GO:0004672 ... O14976 25822739 MOAD: Kd=0.0089uM
    BindingDB: Kd=8.9nM
    311569 4y8d:B (2.1) BS01 49J 2.7.11.1 GO:0004672 ... O14976 25822739 MOAD: Kd=0.0089uM
    BindingDB: Kd=8.9nM
    311570 4y8e:A (1.61) BS01 CA 3.1.4.52 GO:0071111 ... Q9HXH7 N/A
    311571 4y8e:A (1.61) BS02 CA 3.1.4.52 GO:0071111 ... Q9HXH7 N/A
    311572 4y8e:A (1.61) BS03 CA 3.1.4.52 GO:0071111 ... Q9HXH7 N/A
    311573 4y8e:B (1.61) BS01 CA 3.1.4.52 GO:0071111 ... Q9HXH7 N/A
    311574 4y8e:B (1.61) BS02 CA 3.1.4.52 GO:0071111 ... Q9HXH7 N/A
    311575 4y8e:B (1.61) BS03 CA 3.1.4.52 GO:0071111 ... Q9HXH7 N/A
    311576 4y8g:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311577 4y8g:H (2.6) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311578 4y8g:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311579 4y8g:K (2.6) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311580 4y8g:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311581 4y8g:N (2.6) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311582 4y8g:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311583 4y8g:V (2.6) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311584 4y8g:V (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P25043 26020686
    311585 4y8g:Y (2.6) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311586 4y8g:Y (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311587 4y8g:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686
    311588 4y8g:b (2.6) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311589 4y8h:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26020686
    311590 4y8h:H (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311591 4y8h:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26020686
    311592 4y8h:K (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311593 4y8h:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311594 4y8h:N (2.5) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 26020686
    311595 4y8h:N (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26020686
    311596 4y8h:V (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 26020686
    311597 4y8h:V (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P25043 26020686
    311598 4y8h:Y (2.5) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 26020686
    311599 4y8h:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26020686
    311600 4y8h:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26020686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).