SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    312001 4yad:A (1.73) BS01 ZN 2.3.2.27 N/A O15164 26061247
    312002 4yad:A (1.73) BS02 ZN 2.3.2.27 N/A O15164 26061247
    312003 4yad:A (1.73) BS03 4A7 2.3.2.27 N/A O15164 26061247 MOAD: ic50=2.5uM
    312004 4yad:B (1.73) BS01 ZN 2.3.2.27 N/A O15164 26061247
    312005 4yad:B (1.73) BS02 ZN 2.3.2.27 N/A O15164 26061247
    312006 4yad:B (1.73) BS03 4A7 2.3.2.27 N/A O15164 26061247 MOAD: ic50=2.5uM
    312007 4yaf:A (1.91) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312008 4yaf:A (1.91) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312009 4yaf:A (1.91) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312010 4yaf:B (1.91) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312011 4yaf:B (1.91) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312012 4yaf:B (1.91) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312013 4yag:A (1.5) BS01 NAI ? GO:0000166 ... C0SUJ9 26940872
    312014 4yag:B (1.5) BS01 NAI ? GO:0000166 ... C0SUJ9 26940872
    312015 4yah:X (1.6) BS01 MET ? N/A P28635 25803078
    312016 4yai:A (1.6) BS01 NAI ? GO:0000166 ... C0SUJ9 26940872
    312017 4yai:B (1.6) BS01 NAI ? GO:0000166 ... C0SUJ9 26940872
    312018 4yai:B (1.6) BS02 GGE ? GO:0000166 ... C0SUJ9 26940872
    312019 4yak:A (2.464) BS01 COA ? GO:0000166 ... B1L3C9 26787904
    312020 4yak:C (2.464) BS01 ACO ? GO:0000166 ... B1L3C9 26787904
    312021 4yal:A (1.88) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312022 4yal:A (1.88) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312023 4yal:A (1.88) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312024 4yal:B (1.88) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312025 4yal:B (1.88) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312026 4yal:B (1.88) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312027 4yan:A (2.593) BS01 GSH ? N/A G2IN93 26637355
    312028 4yan:B (2.593) BS01 GSH ? N/A G2IN93 26637355
    312029 4yan:C (2.593) BS01 GSH ? N/A G2IN93 26637355
    312030 4yan:D (2.593) BS01 GSH ? N/A G2IN93 26637355
    312031 4yao:A (2.5) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312032 4yao:A (2.5) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312033 4yao:A (2.5) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312034 4yao:B (2.5) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312035 4yao:B (2.5) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312036 4yao:B (2.5) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312037 4yas:A (2.0) BS01 CLX 4.1.2.47 GO:0009694 ... P52704 10548044
    312038 4yat:A (2.18) BS01 ZN 2.3.2.27 N/A O15164 26061247
    312039 4yat:A (2.18) BS02 ZN 2.3.2.27 N/A O15164 26061247
    312040 4yat:A (2.18) BS03 4A8 2.3.2.27 N/A O15164 26061247 MOAD: ic50=9.3uM
    BindingDB: IC50=9300nM
    312041 4yat:B (2.18) BS01 ZN 2.3.2.27 N/A O15164 26061247
    312042 4yat:B (2.18) BS02 ZN 2.3.2.27 N/A O15164 26061247
    312043 4yat:B (2.18) BS03 4A8 2.3.2.27 N/A O15164 26061247 MOAD: ic50=9.3uM
    BindingDB: IC50=9300nM
    312044 4yau:A (2.2) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312045 4yau:A (2.2) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312046 4yau:A (2.2) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312047 4yau:B (2.2) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312048 4yau:B (2.2) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312049 4yau:B (2.2) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312050 4yav:A (1.401) BS01 GAZ ? GO:0005737 ... G2IN94 26940872
    312051 4yaw:A (2.0) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312052 4yaw:A (2.0) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312053 4yaw:A (2.0) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312054 4yaw:B (2.0) BS01 FMN 1.6.2.4 GO:0003958 ... P00388 27189945
    312055 4yaw:B (2.0) BS02 FAD 1.6.2.4 GO:0003958 ... P00388 27189945
    312056 4yaw:B (2.0) BS03 2AM 1.6.2.4 GO:0003958 ... P00388 27189945
    312057 4yax:A (2.25) BS01 4AE 2.3.2.27 N/A O15164 26061247 MOAD: ic50=1.5uM
    BindingDB: IC50=730nM
    312058 4yax:A (2.25) BS02 ZN 2.3.2.27 N/A O15164 26061247
    312059 4yax:A (2.25) BS03 ZN 2.3.2.27 N/A O15164 26061247
    312060 4yax:B (2.25) BS01 ZN 2.3.2.27 N/A O15164 26061247
    312061 4yax:B (2.25) BS02 ZN 2.3.2.27 N/A O15164 26061247
    312062 4yax:B (2.25) BS03 4AE 2.3.2.27 N/A O15164 26061247 MOAD: ic50=1.5uM
    BindingDB: IC50=730nM
    312063 4yay:A (2.9) BS01 ZD7 ? GO:0004930 ... P0ABE7
    P30556
    25913193
    312064 4yb4:A (2.5) BS01 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312065 4yb4:A (2.5) BS02 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312066 4yb4:A (2.5) BS03 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312067 4yb4:B (2.5) BS01 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312068 4yb4:B (2.5) BS02 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312069 4yb4:B (2.5) BS03 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312070 4yb4:B (2.5) BS04 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312071 4yb4:C (2.5) BS01 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312072 4yb4:C (2.5) BS02 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312073 4yb4:C (2.5) BS03 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312074 4yb4:D (2.5) BS01 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312075 4yb4:D (2.5) BS02 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312076 4yb4:D (2.5) BS03 48Y 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312077 4yb4:D (2.5) BS04 NAI 1.1.1.286 GO:0004449 ... Q72IW9 N/A
    312078 4yb5:A (2.24) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312079 4yb5:B (2.24) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312080 4yb5:B (2.24) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312081 4yb5:C (2.24) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312082 4yb5:C (2.24) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312083 4yb5:D (2.24) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312084 4yb5:E (2.24) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312085 4yb5:E (2.24) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312086 4yb5:F (2.24) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312087 4yb5:F (2.24) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312088 4yb6:A (1.98) BS01 AMP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312089 4yb6:A (1.98) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312090 4yb6:A (1.98) BS03 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312091 4yb6:B (1.98) BS01 AMP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312092 4yb6:B (1.98) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312093 4yb6:B (1.98) BS03 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312094 4yb6:C (1.98) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312095 4yb6:C (1.98) BS02 AMP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312096 4yb6:C (1.98) BS03 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312097 4yb6:D (1.98) BS01 AMP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312098 4yb6:D (1.98) BS02 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312099 4yb6:D (1.98) BS03 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312100 4yb6:E (1.98) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312101 4yb6:E (1.98) BS02 AMP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312102 4yb6:E (1.98) BS03 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312103 4yb6:E (1.98) BS04 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312104 4yb6:F (1.98) BS01 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312105 4yb6:F (1.98) BS02 AMP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312106 4yb6:F (1.98) BS03 HIS 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312107 4yb7:A (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312108 4yb7:A (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312109 4yb7:B (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312110 4yb7:B (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312111 4yb7:C (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312112 4yb7:C (2.2) BS02 PO4 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312113 4yb7:C (2.2) BS03 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312114 4yb7:D (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312115 4yb7:D (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312116 4yb7:E (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312117 4yb7:E (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312118 4yb7:F (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312119 4yb7:F (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312120 4yb7:G (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312121 4yb7:G (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312122 4yb7:H (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312123 4yb7:H (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312124 4yb7:I (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312125 4yb7:I (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312126 4yb7:J (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312127 4yb7:J (2.2) BS02 PO4 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312128 4yb7:J (2.2) BS03 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312129 4yb7:K (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312130 4yb7:K (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312131 4yb7:L (2.2) BS01 MG 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312132 4yb7:L (2.2) BS02 ATP 2.4.2.17 GO:0000105 ... Q5HSJ4 27191057
    312133 4yb8:B (1.9) BS01 ADP ? GO:0005524 ... B1L7P8 26787904
    312134 4yb8:D (1.9) BS01 ADP ? GO:0005524 ... B1L7P8 26787904
    312135 4ybb:AB (2.1) BS01 rna ? GO:0000028 ... P0A7V0 25775265
    312136 4ybb:AB (2.1) BS02 ZN ? GO:0000028 ... P0A7V0 25775265
    312137 4ybb:AC (2.1) BS01 rna ? GO:0003676 ... P0A7V3 25775265
    312138 4ybb:AD (2.1) BS01 rna ? GO:0000028 ... P0A7V8 25775265
    312139 4ybb:AE (2.1) BS01 rna ? GO:0000028 ... P0A7W1 25775265
    312140 4ybb:AF (2.1) BS01 rna ? GO:0003735 ... P02358 25775265
    312141 4ybb:AG (2.1) BS01 rna ? GO:0003723 ... P02359 25775265
    312142 4ybb:AH (2.1) BS01 rna ? GO:0000028 ... P0A7W7 25775265
    312143 4ybb:AI (2.1) BS01 rna ? GO:0000049 ... P0A7X3 25775265
    312144 4ybb:AJ (2.1) BS01 rna ? GO:0000049 ... P0A7R5 25775265
    312145 4ybb:AK (2.1) BS01 rna ? GO:0002181 ... P0A7R9 25775265
    312146 4ybb:AL (2.1) BS01 rna ? GO:0000049 ... P0A7S3 25775265
    312147 4ybb:AM (2.1) BS01 rna ? GO:0000049 ... P0A7S9 25775265
    312148 4ybb:AM (2.1) BS02 MG ? GO:0000049 ... P0A7S9 25775265
    312149 4ybb:AN (2.1) BS01 rna ? GO:0000028 ... P0AG59 25775265
    312150 4ybb:AO (2.1) BS01 rna ? GO:0000028 ... P0ADZ4 25775265
    312151 4ybb:AO (2.1) BS02 rna ? GO:0000028 ... P0ADZ4 25775265
    312152 4ybb:AP (2.1) BS01 rna ? GO:0000028 ... P0A7T3 25775265
    312153 4ybb:AQ (2.1) BS01 rna ? GO:0000028 ... P0AG63 25775265
    312154 4ybb:AR (2.1) BS01 rna ? GO:0003735 ... P0A7T7 25775265
    312155 4ybb:AS (2.1) BS01 rna ? GO:0003723 ... P0A7U3 25775265
    312156 4ybb:AT (2.1) BS01 rna ? GO:0000028 ... P0A7U7 25775265
    312157 4ybb:AU (2.1) BS01 rna ? GO:0003735 ... P68679 25775265
    312158 4ybb:BB (2.1) BS01 rna ? GO:0000028 ... P0A7V0 25775265
    312159 4ybb:BB (2.1) BS02 rna ? GO:0000028 ... P0A7V0 25775265
    312160 4ybb:BC (2.1) BS01 rna ? GO:0003676 ... P0A7V3 25775265
    312161 4ybb:BD (2.1) BS01 rna ? GO:0000028 ... P0A7V8 25775265
    312162 4ybb:BD (2.1) BS02 rna ? GO:0000028 ... P0A7V8 25775265
    312163 4ybb:BE (2.1) BS01 rna ? GO:0000028 ... P0A7W1 25775265
    312164 4ybb:BF (2.1) BS01 rna ? GO:0003735 ... P02358 25775265
    312165 4ybb:BG (2.1) BS01 rna ? GO:0003723 ... P02359 25775265
    312166 4ybb:BH (2.1) BS01 rna ? GO:0000028 ... P0A7W7 25775265
    312167 4ybb:BI (2.1) BS01 rna ? GO:0000049 ... P0A7X3 25775265
    312168 4ybb:BJ (2.1) BS01 rna ? GO:0000049 ... P0A7R5 25775265
    312169 4ybb:BK (2.1) BS01 rna ? GO:0002181 ... P0A7R9 25775265
    312170 4ybb:BL (2.1) BS01 rna ? GO:0000049 ... P0A7S3 25775265
    312171 4ybb:BM (2.1) BS01 rna ? GO:0000049 ... P0A7S9 25775265
    312172 4ybb:BN (2.1) BS01 rna ? GO:0000028 ... P0AG59 25775265
    312173 4ybb:BO (2.1) BS01 rna ? GO:0000028 ... P0ADZ4 25775265
    312174 4ybb:BO (2.1) BS02 rna ? GO:0000028 ... P0ADZ4 25775265
    312175 4ybb:BP (2.1) BS01 rna ? GO:0000028 ... P0A7T3 25775265
    312176 4ybb:BQ (2.1) BS01 rna ? GO:0000028 ... P0AG63 25775265
    312177 4ybb:BR (2.1) BS01 rna ? GO:0003735 ... P0A7T7 25775265
    312178 4ybb:BS (2.1) BS01 rna ? GO:0003723 ... P0A7U3 25775265
    312179 4ybb:BT (2.1) BS01 rna ? GO:0000028 ... P0A7U7 25775265
    312180 4ybb:BU (2.1) BS01 rna ? GO:0003735 ... P68679 25775265
    312181 4ybb:C0 (2.1) BS01 rna ? GO:0000027 ... P0AG51 25775265
    312182 4ybb:C0 (2.1) BS02 rna ? GO:0000027 ... P0AG51 25775265
    312183 4ybb:C1 (2.1) BS01 rna ? GO:0000027 ... P0A7N4 25775265
    312184 4ybb:C2 (2.1) BS01 rna ? GO:0000027 ... P0A7N9 25775265
    312185 4ybb:C3 (2.1) BS01 rna ? GO:0002181 ... P0A7P5 25775265
    312186 4ybb:C4 (2.1) BS01 rna ? GO:0002181 ... P0A7Q1 25775265
    312187 4ybb:C5 (2.1) BS01 rna ? GO:0002181 ... P0A7Q6 25775265
    312188 4ybb:CC (2.1) BS01 rna ? GO:0000027 ... P60422 25775265
    312189 4ybb:CD (2.1) BS01 rna ? GO:0000027 ... P60438 25775265
    312190 4ybb:CE (2.1) BS01 rna ? GO:0001070 ... P60723 25775265
    312191 4ybb:CF (2.1) BS01 rna ? GO:0000027 ... P62399 25775265
    312192 4ybb:CF (2.1) BS02 rna ? GO:0000027 ... P62399 25775265
    312193 4ybb:CG (2.1) BS01 rna ? GO:0000027 ... P0AG55 25775265
    312194 4ybb:CH (2.1) BS01 rna ? GO:0002181 ... P0A7R1 25775265
    312195 4ybb:CJ (2.1) BS01 rna ? GO:0000027 ... P0A7J7 25775265
    312196 4ybb:CK (2.1) BS01 rna ? GO:0002181 ... P0AA10 25775265
    312197 4ybb:CL (2.1) BS01 rna ? GO:0002181 ... P0ADY3 25775265
    312198 4ybb:CL (2.1) BS02 rna ? GO:0002181 ... P0ADY3 25775265
    312199 4ybb:CM (2.1) BS01 rna ? GO:0002181 ... P02413 25775265
    312200 4ybb:CN (2.1) BS01 rna ? GO:0000027 ... P0ADY7 25775265

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).