SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    312401 4yd9:J (3.0) BS01 CUO N/A N/A N/A 26602184
    312402 4yd9:J (3.0) BS02 CUO N/A N/A N/A 26602184
    312403 4yd9:J (3.0) BS03 CUO N/A N/A N/A 26602184
    312404 4yd9:J (3.0) BS04 CUO N/A N/A N/A 26602184
    312405 4yd9:K (3.0) BS01 CUO N/A N/A N/A 26602184
    312406 4yd9:K (3.0) BS02 CUO N/A N/A N/A 26602184
    312407 4yd9:L (3.0) BS01 CUO N/A N/A N/A 26602184
    312408 4yd9:M (3.0) BS01 CUO N/A N/A N/A 26602184
    312409 4yd9:M (3.0) BS02 CUO N/A N/A N/A 26602184
    312410 4yd9:M (3.0) BS03 CUO N/A N/A N/A 26602184
    312411 4yd9:M (3.0) BS04 CUO N/A N/A N/A 26602184
    312412 4yd9:N (3.0) BS01 CUO N/A N/A N/A 26602184
    312413 4yd9:N (3.0) BS02 CUO N/A N/A N/A 26602184
    312414 4yd9:O (3.0) BS01 CUO N/A N/A N/A 26602184
    312415 4yd9:P (3.0) BS01 CUO N/A N/A N/A 26602184
    312416 4yd9:P (3.0) BS02 CUO N/A N/A N/A 26602184
    312417 4yd9:P (3.0) BS03 CUO N/A N/A N/A 26602184
    312418 4yd9:P (3.0) BS04 CUO N/A N/A N/A 26602184
    312419 4yd9:Q (3.0) BS01 CUO N/A N/A N/A 26602184
    312420 4yd9:Q (3.0) BS02 CUO N/A N/A N/A 26602184
    312421 4yd9:R (3.0) BS01 CUO N/A N/A N/A 26602184
    312422 4yd9:S (3.0) BS01 CUO N/A N/A N/A 26602184
    312423 4yd9:S (3.0) BS02 CUO N/A N/A N/A 26602184
    312424 4yd9:S (3.0) BS03 CUO N/A N/A N/A 26602184
    312425 4yd9:S (3.0) BS04 CUO N/A N/A N/A 26602184
    312426 4yd9:T (3.0) BS01 CUO N/A N/A N/A 26602184
    312427 4yd9:T (3.0) BS02 CUO N/A N/A N/A 26602184
    312428 4yd9:U (3.0) BS01 CUO N/A N/A N/A 26602184
    312429 4yd9:V (3.0) BS01 CUO N/A N/A N/A 26602184
    312430 4yd9:V (3.0) BS02 CUO N/A N/A N/A 26602184
    312431 4yd9:V (3.0) BS03 CUO N/A N/A N/A 26602184
    312432 4yd9:V (3.0) BS04 CUO N/A N/A N/A 26602184
    312433 4yd9:W (3.0) BS01 CUO N/A N/A N/A 26602184
    312434 4yd9:W (3.0) BS02 CUO N/A N/A N/A 26602184
    312435 4yd9:X (3.0) BS01 CUO N/A N/A N/A 26602184
    312436 4yd9:Y (3.0) BS01 CUO N/A N/A N/A 26602184
    312437 4yd9:Y (3.0) BS02 CUO N/A N/A N/A 26602184
    312438 4yd9:Y (3.0) BS03 CUO N/A N/A N/A 26602184
    312439 4yd9:Y (3.0) BS04 CUO N/A N/A N/A 26602184
    312440 4yd9:Z (3.0) BS01 CUO N/A N/A N/A 26602184
    312441 4yd9:Z (3.0) BS02 CUO N/A N/A N/A 26602184
    312442 4yd9:a (3.0) BS01 CUO N/A N/A N/A 26602184
    312443 4yd9:b (3.0) BS01 CUO N/A N/A N/A 26602184
    312444 4yd9:b (3.0) BS02 CUO N/A N/A N/A 26602184
    312445 4yd9:b (3.0) BS03 CUO N/A N/A N/A 26602184
    312446 4yd9:b (3.0) BS04 CUO N/A N/A N/A 26602184
    312447 4yd9:c (3.0) BS01 CUO N/A N/A N/A 26602184
    312448 4yd9:c (3.0) BS02 CUO N/A N/A N/A 26602184
    312449 4yd9:d (3.0) BS01 CUO N/A N/A N/A 26602184
    312450 4yda:A (1.951) BS01 RET ? GO:0001972 ... P29373 27310917
    312451 4ydb:A (2.03) BS01 RET ? GO:0001972 ... P29373 27310917
    312452 4ydd:A (1.86) BS01 SF4 ? GO:0016020 ... G8QM55 26940877
    312453 4ydd:A (1.86) BS02 MO ? GO:0016020 ... G8QM55 26940877
    312454 4ydd:A (1.86) BS03 MGD ? GO:0016020 ... G8QM55 26940877
    312455 4ydd:A (1.86) BS04 MD1 ? GO:0016020 ... G8QM55 26940877
    312456 4ydd:B (1.86) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    312457 4ydd:B (1.86) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    312458 4ydd:B (1.86) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    312459 4ydd:B (1.86) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    312460 4ydd:C (1.86) BS01 SF4 ? GO:0016020 ... G8QM55 26940877
    312461 4ydd:C (1.86) BS02 MO ? GO:0016020 ... G8QM55 26940877
    312462 4ydd:C (1.86) BS03 MGD ? GO:0016020 ... G8QM55 26940877
    312463 4ydd:C (1.86) BS04 MD1 ? GO:0016020 ... G8QM55 26940877
    312464 4ydd:D (1.86) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    312465 4ydd:D (1.86) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    312466 4ydd:D (1.86) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    312467 4ydd:D (1.86) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    312468 4ydd:E (1.86) BS01 SF4 ? GO:0016020 ... G8QM55 26940877
    312469 4ydd:E (1.86) BS02 MO ? GO:0016020 ... G8QM55 26940877
    312470 4ydd:E (1.86) BS03 MGD ? GO:0016020 ... G8QM55 26940877
    312471 4ydd:E (1.86) BS04 MD1 ? GO:0016020 ... G8QM55 26940877
    312472 4ydd:F (1.86) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    312473 4ydd:F (1.86) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    312474 4ydd:F (1.86) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    312475 4ydd:F (1.86) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    312476 4yde:B (2.701) BS01 ZN N/A GO:0003824 ... N/A N/A
    312477 4yde:B (2.701) BS02 4C7 N/A GO:0003824 ... N/A N/A
    312478 4ydf:A (2.804) BS01 4B1 ? GO:0004190 ... Q82134 26000468
    312479 4ydf:B (2.804) BS01 4B1 ? GO:0004190 ... Q82134 26000468
    312480 4ydg:A (3.25) BS01 G3G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0004190 ... P03362 26000468
    312481 4ydg:B (3.25) BS01 G3G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0004190 ... P03362 26000468
    312482 4ydh:B (3.8) BS01 GNP 3.6.5.2 GO:0000139 ... P60953 25963737
    312483 4ydh:B (3.8) BS02 MG 3.6.5.2 GO:0000139 ... P60953 25963737
    312484 4ydh:D (3.8) BS01 GNP 3.6.5.2 GO:0000139 ... P60953 25963737
    312485 4ydh:D (3.8) BS02 MG 3.6.5.2 GO:0000139 ... P60953 25963737
    312486 4ydj:B (2.308) BS01 BU3 N/A N/A N/A 26004070
    312487 4ydj:B (2.308) BS02 BU3 N/A N/A N/A 26004070
    312488 4ydj:H (2.308) BS01 BU3 N/A N/A N/A 26004070
    312489 4ydm:A (1.25) BS01 4AJ ? GO:0001523 ... P02766 26051248
    312490 4ydm:B (1.25) BS01 4AJ ? GO:0001523 ... P02766 26051248
    312491 4ydn:A (1.35) BS01 2WN ? GO:0001523 ... P02766 26051248
    312492 4ydn:A (1.35) BS02 4B8 ? GO:0001523 ... P02766 26051248
    312493 4ydn:B (1.35) BS01 2WN ? GO:0001523 ... P02766 26051248
    312494 4ydo:B (3.0) BS01 ZN N/A GO:0003824 ... N/A N/A
    312495 4ydp:A (1.4) BS01 LEU ? N/A O75112 N/A
    312496 4ydp:B (1.4) BS01 LEU ? N/A O75112 N/A
    312497 4ydq:A (2.3) BS01 ANP 6.1.1.15 GO:0000166 ... Q8I5R7 25817387
    312498 4ydq:A (2.3) BS02 HFG 6.1.1.15 GO:0000166 ... Q8I5R7 25817387 MOAD: Kd~300nM
    312499 4ydq:B (2.3) BS01 ANP 6.1.1.15 GO:0000166 ... Q8I5R7 25817387
    312500 4ydq:B (2.3) BS02 HFG 6.1.1.15 GO:0000166 ... Q8I5R7 25817387 MOAD: Kd~300nM
    312501 4yds:A (2.3) BS01 ATP 3.6.1.3 GO:0005524 ... Q4J9K9 26508112
    312502 4yds:A (2.3) BS02 MG 3.6.1.3 GO:0005524 ... Q4J9K9 26508112
    312503 4ydu:A (2.33) BS01 ADP 2.3.1.234 GO:0000287 ... P05852 25578970
    312504 4ydu:A (2.33) BS02 MG 2.3.1.234 GO:0000287 ... P05852 25578970
    312505 4ydu:A (2.33) BS03 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    312506 4ydu:B (2.33) BS01 ADP 2.3.1.234 GO:0000287 ... P05852 25578970
    312507 4ydu:B (2.33) BS02 MG 2.3.1.234 GO:0000287 ... P05852 25578970
    312508 4ydu:B (2.33) BS03 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    312509 4ydu:C (2.33) BS01 ADP ? GO:0000408 ... P76256 25578970
    312510 4ydu:D (2.33) BS01 ADP ? GO:0000408 ... P76256 25578970
    312511 4ydv:A (2.7) BS01 peptide ? GO:0002250 ... P01834 26237403
    312512 4ydv:B (2.7) BS01 peptide ? N/A S6B291 26237403
    312513 4ydv:H (2.7) BS01 peptide ? N/A S6B291 26237403
    312514 4ydv:H (2.7) BS02 peptide ? N/A S6B291 26237403
    312515 4ydv:L (2.7) BS01 peptide ? GO:0002250 ... P01834 26237403
    312516 4ydx:A (1.602) BS01 PT ? GO:0005507 ... O00244 26327386
    312517 4ydx:A (1.602) BS02 TCE ? GO:0005507 ... O00244 26327386
    312518 4ye1:A (1.39) BS01 HEM ? GO:0005515 ... P00044 N/A
    312519 4ye1:A (1.39) BS02 T3Y ? GO:0005515 ... P00044 N/A
    312520 4ye1:B (1.39) BS01 HEM ? GO:0005515 ... P00044 N/A
    312521 4ye1:B (1.39) BS02 T3Y ? GO:0005515 ... P00044 N/A
    312522 4ye1:B (1.39) BS03 T3Y ? GO:0005515 ... P00044 N/A
    312523 4ye2:A (3.098) BS01 A2P 2.1.1.56
    2.7.7.50
    3.1.4.-
    N/A B3F2X4 25878106
    312524 4ye3:A (1.35) BS01 G04 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 26010498
    312525 4ye3:B (1.35) BS01 G04 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 26010498 MOAD: Ki=4.3nM
    312526 4yeb:A (3.19) BS01 CA ? N/A Q80TS3 26235031
    312527 4yec:B (1.12) BS01 peptide N/A N/A N/A 28414448
    312528 4yed:A (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    312529 4yed:B (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    312530 4yed:C (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    312531 4yed:D (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    312532 4yee:A (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312533 4yee:A (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312534 4yee:A (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312535 4yee:B (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312536 4yee:B (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312537 4yee:B (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312538 4yee:C (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312539 4yee:C (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312540 4yee:C (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312541 4yee:D (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312542 4yee:D (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312543 4yee:D (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312544 4yee:E (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312545 4yee:E (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312546 4yee:E (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312547 4yee:F (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312548 4yee:F (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312549 4yee:F (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312550 4yee:G (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312551 4yee:G (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312552 4yee:G (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312553 4yee:G (2.0) BS04 GLC ? N/A Q9QZH4 25774984
    312554 4yee:H (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312555 4yee:H (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312556 4yee:H (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312557 4yee:I (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312558 4yee:I (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312559 4yee:I (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312560 4yee:J (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312561 4yee:J (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312562 4yee:J (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312563 4yee:K (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312564 4yee:K (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312565 4yee:K (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312566 4yee:L (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312567 4yee:L (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312568 4yee:L (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312569 4yee:M (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312570 4yee:M (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312571 4yee:M (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312572 4yee:N (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312573 4yee:N (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312574 4yee:N (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312575 4yee:N (2.0) BS04 GLC ? N/A Q9QZH4 25774984
    312576 4yee:O (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312577 4yee:O (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312578 4yee:O (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312579 4yee:P (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312580 4yee:P (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312581 4yee:P (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312582 4yee:Q (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312583 4yee:Q (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312584 4yee:Q (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312585 4yee:R (2.0) BS01 GLC ? N/A Q9QZH4 25774984
    312586 4yee:R (2.0) BS02 GLC ? N/A Q9QZH4 25774984
    312587 4yee:R (2.0) BS03 GLC ? N/A Q9QZH4 25774984
    312588 4yef:A (1.72) BS01 GLC ? N/A P80386 25774984
    312589 4yef:A (1.72) BS02 GLC ? N/A P80386 25774984
    312590 4yef:B (1.72) BS01 GLC ? N/A P80386 25774984
    312591 4yef:B (1.72) BS02 GLC ? N/A P80386 25774984
    312592 4yef:C (1.72) BS01 GLC ? N/A P80386 25774984
    312593 4yef:C (1.72) BS02 GLC ? N/A P80386 25774984
    312594 4yef:D (1.72) BS01 GLC ? N/A P80386 25774984
    312595 4yef:D (1.72) BS02 GLC ? N/A P80386 25774984
    312596 4yef:E (1.72) BS01 GLC ? N/A P80386 25774984
    312597 4yef:E (1.72) BS02 GLC ? N/A P80386 25774984
    312598 4yef:F (1.72) BS01 GLC ? N/A P80386 25774984
    312599 4yef:F (1.72) BS02 GLC ? N/A P80386 25774984
    312600 4yef:G (1.72) BS01 GLC ? N/A P80386 25774984

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).