SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    312601 4yef:G (1.72) BS02 GLC ? N/A P80386 25774984
    312602 4yeh:A (2.45) BS01 MG ? GO:0046872 ... G1K3R9 26242869
    312603 4yeh:B (2.45) BS01 MG ? GO:0046872 ... G1K3R9 26242869
    312604 4yej:A (1.4) BS01 RAM ? N/A Q9AYY6 N/A
    312605 4yek:A (2.55) BS01 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    312606 4yek:A (2.55) BS02 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    312607 4yek:B (2.55) BS01 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    312608 4yek:B (2.55) BS02 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    312609 4yel:A (1.72) BS01 RAM ? N/A Q9AYY6 N/A
    312610 4yel:A (1.72) BS02 GLC ? N/A Q9AYY6 N/A
    312611 4yer:A (2.35) BS01 ADP ? GO:0005524 ... Q9X1C3 N/A
    312612 4yer:A (2.35) BS02 ADP ? GO:0005524 ... Q9X1C3 N/A
    312613 4yer:B (2.35) BS01 ADP ? GO:0005524 ... Q9X1C3 N/A
    312614 4yer:B (2.35) BS02 ADP ? GO:0005524 ... Q9X1C3 N/A
    312615 4yes:B (1.5) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 26005532
    312616 4yes:B (1.5) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 26005532
    312617 4yes:B (1.5) BS03 MG 3.4.21.5 GO:0004252 ... P00734 26005532
    312618 4yes:B (1.5) BS04 45S 3.4.21.5 GO:0004252 ... P00734 26005532 MOAD: Ki=9.6nM
    312619 4yet:A (1.75) BS01 FE 1.15.1.1 GO:0004784 ... O15904 25961325
    312620 4yet:B (1.75) BS01 FE 1.15.1.1 GO:0004784 ... O15904 25961325
    312621 4yew:C (2.683) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312622 4yex:C (3.2) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312623 4yey:C (3.354) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312624 4yf0:A (2.79) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312625 4yf0:B (2.79) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312626 4yf4:A (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312627 4yf4:A (1.8) BS02 MG 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312628 4yf4:B (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312629 4yf4:B (1.8) BS02 MG 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312630 4yf4:C (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312631 4yf4:C (1.8) BS02 MG 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312632 4yf4:D (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312633 4yf4:D (1.8) BS02 MG 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312634 4yf5:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312635 4yf5:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312636 4yf6:A (3.002) BS01 MG 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312637 4yf6:C (3.002) BS01 ZN 4.2.1.1 GO:0004089 ... P9WPJ6 25929542
    312638 4yf9:A (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312639 4yf9:C (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312640 4yf9:D (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312641 4yf9:D (2.6) BS02 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312642 4yf9:F (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312643 4yf9:G (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312644 4yf9:G (2.6) BS02 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312645 4yf9:I (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312646 4yf9:J (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312647 4yf9:L (2.6) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312648 4yfa:A (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312649 4yfa:C (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312650 4yfa:D (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312651 4yfa:F (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312652 4yfa:G (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312653 4yfa:G (2.2) BS02 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312654 4yfa:I (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312655 4yfa:J (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312656 4yfa:L (2.2) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312657 4yfb:A (1.75) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312658 4yfb:C (1.75) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312659 4yfb:C (1.75) BS02 PAC ? GO:0016787 ... A0A0A1VBK6 28827579
    312660 4yfb:D (1.75) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312661 4yfb:F (1.75) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312662 4yfb:F (1.75) BS02 PAC ? GO:0016787 ... A0A0A1VBK6 28827579
    312663 4yfb:I (1.75) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312664 4yfb:I (1.75) BS02 PAC ? GO:0016787 ... A0A0A1VBK6 28827579
    312665 4yfb:L (1.75) BS01 peptide ? GO:0016787 ... A0A0A1VBK6 28827579
    312666 4yfb:L (1.75) BS02 PAC ? GO:0016787 ... A0A0A1VBK6 28827579
    312667 4yff:A (3.07) BS01 4CV 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=<10.0nM
    312668 4yff:B (3.07) BS01 4CV 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=<10.0nM
    312669 4yff:C (3.07) BS01 4CV 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=<10.0nM
    312670 4yff:D (3.07) BS01 4CV 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=<10.0nM
    312671 4yfh:A (3.49) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312672 4yfh:B (3.49) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312673 4yfi:A (2.7) BS01 4CW 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=500nM, Kd=111nM
    312674 4yfi:B (2.7) BS01 4CW 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=500nM, Kd=111nM
    312675 4yfi:C (2.7) BS01 4CW 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=500nM, Kd=111nM
    312676 4yfi:D (2.7) BS01 4CW 2.7.11.1 GO:0004672 ... Q59H18 26355916 BindingDB: IC50=500nM, Kd=111nM
    312677 4yfk:D (3.571) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312678 4yfk:D (3.571) BS02 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312679 4yfk:D (3.571) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312680 4yfk:D (3.571) BS04 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312681 4yfk:D (3.571) BS05 4C6 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312682 4yfk:J (3.571) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312683 4yfk:J (3.571) BS02 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312684 4yfk:J (3.571) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312685 4yfk:J (3.571) BS04 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312686 4yfk:J (3.571) BS05 4C6 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312687 4yfn:D (3.817) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312688 4yfn:D (3.817) BS02 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312689 4yfn:D (3.817) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312690 4yfn:D (3.817) BS04 4C2 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312691 4yfn:I (3.817) BS01 4C2 2.7.7.6 GO:0000428 ... A7ZUK1 25798859
    312692 4yfn:J (3.817) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312693 4yfn:J (3.817) BS02 4C2 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312694 4yfp:A (1.951) BS01 RET ? GO:0001972 ... P29373 27310917
    312695 4yfq:A (1.62) BS01 RET ? GO:0001972 ... P29373 27310917
    312696 4yfr:A (1.952) BS01 RET ? GO:0001972 ... P29373 27310917
    312697 4yft:C (2.914) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    312698 4yfu:A (1.5) BS01 dna 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312699 4yfu:A (1.5) BS02 dna 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312700 4yfu:A (1.5) BS03 GLC 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312701 4yfu:A (1.5) BS04 FRU 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312702 4yfu:A (1.5) BS05 TTP 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312703 4yfu:D (1.5) BS01 dna 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312704 4yfu:D (1.5) BS02 dna 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312705 4yfu:D (1.5) BS03 GLC 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312706 4yfu:D (1.5) BS04 FRU 2.7.7.7 GO:0000166 ... E1C9K5 26211612
    312707 4yfx:C (3.844) BS01 4C4 2.7.7.6 GO:0000428 ... A7ZUK1 25798859
    312708 4yfx:D (3.844) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312709 4yfx:D (3.844) BS02 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312710 4yfx:D (3.844) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312711 4yfx:D (3.844) BS04 4C4 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312712 4yfx:J (3.844) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312713 4yfx:J (3.844) BS02 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312714 4yfx:J (3.844) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    312715 4yfy:A (1.9) BS01 0FX ? GO:0004479 ... M9P0Q2 25752909
    312716 4yfy:A (1.9) BS02 1YJ ? GO:0004479 ... M9P0Q2 25752909
    312717 4yfy:B (1.9) BS01 0FX ? GO:0004479 ... M9P0Q2 25752909
    312718 4yfy:B (1.9) BS02 1YJ ? GO:0004479 ... M9P0Q2 25752909
    312719 4yfz:A (1.5) BS01 BGC ? GO:0019028 ... B6RGK2 26420502
    312720 4yfz:A (1.5) BS02 GAL ? GO:0019028 ... B6RGK2 26420502
    312721 4yg0:A (1.285) BS01 GAL ? GO:0019028 ... B6RGK2 26420502
    312722 4yg1:A (3.25) BS01 dna ? GO:0003677 ... P23873 26222023
    312723 4yg1:A (3.25) BS02 dna ? GO:0003677 ... P23873 26222023
    312724 4yg1:B (3.25) BS01 dna ? GO:0003677 ... P23873 26222023
    312725 4yg1:B (3.25) BS02 dna ? GO:0003677 ... P23873 26222023
    312726 4yg1:C (3.25) BS01 dna ? GO:0003677 ... P23873 26222023
    312727 4yg1:C (3.25) BS02 dna ? GO:0003677 ... P23873 26222023
    312728 4yg1:D (3.25) BS01 dna ? GO:0003677 ... P23873 26222023
    312729 4yg1:D (3.25) BS02 dna ? GO:0003677 ... P23873 26222023
    312730 4yg2:D (3.7) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312731 4yg2:D (3.7) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312732 4yg2:D (3.7) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312733 4yg2:J (3.7) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312734 4yg2:J (3.7) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312735 4yg2:J (3.7) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312736 4yg2:J (3.7) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    312737 4yg4:A (3.5) BS01 dna ? GO:0003677 ... P23873 26222023
    312738 4yg4:A (3.5) BS02 dna ? GO:0003677 ... P23873 26222023
    312739 4yg4:B (3.5) BS01 dna ? GO:0003677 ... P23873 26222023
    312740 4yg4:B (3.5) BS02 dna ? GO:0003677 ... P23873 26222023
    312741 4yg4:D (3.5) BS01 dna ? GO:0003677 ... P23873 26222023
    312742 4yg6:A (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    312743 4yg6:B (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    312744 4yg6:B (1.46) BS02 GAL ? GO:0019028 ... A2T3T2 26420502
    312745 4yg6:C (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    312746 4yg6:D (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    312747 4yg7:B (3.77) BS01 dna ? GO:0003677 ... P23873 26222023
    312748 4yg7:B (3.77) BS02 dna ? GO:0003677 ... P23873 26222023
    312749 4yg7:C (3.77) BS01 dna ? GO:0003677 ... P23873 26222023
    312750 4yg7:C (3.77) BS02 dna ? GO:0003677 ... P23873 26222023
    312751 4yg7:E (3.77) BS01 dna ? GO:0003677 ... P23873 26222023
    312752 4yg7:E (3.77) BS02 dna ? GO:0003677 ... P23873 26222023
    312753 4yg7:G (3.77) BS01 dna ? GO:0003677 ... P23873 26222023
    312754 4yg7:G (3.77) BS02 dna ? GO:0003677 ... P23873 26222023
    312755 4yg7:K (3.77) BS01 dna 2.7.11.1 GO:0000287 ... P23874 26222023
    312756 4yga:A (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    312757 4yga:A (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    312758 4yga:A (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    312759 4yga:A (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    312760 4yga:C (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    312761 4yga:C (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    312762 4yga:C (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    312763 4yga:C (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    312764 4yga:E (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    312765 4yga:E (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    312766 4yga:E (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    312767 4yga:E (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    312768 4yga:G (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    312769 4yga:G (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    312770 4yga:G (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    312771 4yga:G (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    312772 4ygb:B (1.6) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312773 4ygb:B (1.6) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312774 4ygb:D (1.6) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312775 4ygb:D (1.6) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312776 4ygc:A (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    312777 4ygc:A (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    312778 4ygc:B (2.4) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312779 4ygc:B (2.4) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312780 4ygc:C (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    312781 4ygc:C (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    312782 4ygc:D (2.4) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312783 4ygc:D (2.4) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312784 4ygc:E (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    312785 4ygc:E (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    312786 4ygc:F (2.4) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312787 4ygc:F (2.4) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312788 4ygc:G (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    312789 4ygc:G (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    312790 4ygc:H (2.4) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312791 4ygc:H (2.4) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312792 4ygd:A (2.51) BS01 CA ? GO:0016020 ... P49257 32356523
    312793 4ygd:A (2.51) BS02 CA ? GO:0016020 ... P49257 32356523
    312794 4ygd:B (2.51) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312795 4ygd:B (2.51) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312796 4ygd:C (2.51) BS01 CA ? GO:0016020 ... P49257 32356523
    312797 4ygd:C (2.51) BS02 CA ? GO:0016020 ... P49257 32356523
    312798 4ygd:D (2.51) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    312799 4ygd:D (2.51) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    312800 4ygd:E (2.51) BS01 CA ? GO:0016020 ... P49257 32356523

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).