SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    314201 4ysj:A (2.7) BS03 CA ? GO:0004672 ... Q3HNM4 N/A
    314202 4ysj:A (2.7) BS04 CA ? GO:0004672 ... Q3HNM4 N/A
    314203 4ysj:A (2.7) BS05 MG ? GO:0004672 ... Q3HNM4 N/A
    314204 4ysj:A (2.7) BS06 ADP ? GO:0004672 ... Q3HNM4 N/A
    314205 4ysj:B (2.7) BS01 CA ? GO:0004672 ... Q3HNM4 N/A
    314206 4ysj:B (2.7) BS02 CA ? GO:0004672 ... Q3HNM4 N/A
    314207 4ysj:B (2.7) BS03 CA ? GO:0004672 ... Q3HNM4 N/A
    314208 4ysj:B (2.7) BS04 CA ? GO:0004672 ... Q3HNM4 N/A
    314209 4ysj:B (2.7) BS05 MG ? GO:0004672 ... Q3HNM4 N/A
    314210 4ysj:B (2.7) BS06 ADP ? GO:0004672 ... Q3HNM4 N/A
    314211 4ysk:A (2.466) BS01 FE ? GO:0006749 ... A5VWI3 26082492
    314212 4ysk:B (2.466) BS01 FE ? GO:0006749 ... A5VWI3 26082492
    314213 4ysl:A (1.4618) BS01 FE ? GO:0006749 ... A5VWI3 26082492
    314214 4ysl:A (1.4618) BS02 GSH ? GO:0006749 ... A5VWI3 26082492 MOAD: Kd=1.6uM
    314215 4ysl:B (1.4618) BS01 FE ? GO:0006749 ... A5VWI3 26082492
    314216 4ysl:B (1.4618) BS02 GSH ? GO:0006749 ... A5VWI3 26082492 MOAD: Kd=1.6uM
    314217 4ysm:A (3.19) BS01 CA ? GO:0004672 ... Q3HNM4 N/A
    314218 4ysm:A (3.19) BS02 CA ? GO:0004672 ... Q3HNM4 N/A
    314219 4ysm:A (3.19) BS03 CA ? GO:0004672 ... Q3HNM4 N/A
    314220 4ysm:A (3.19) BS04 CA ? GO:0004672 ... Q3HNM4 N/A
    314221 4ysm:B (3.19) BS01 CA ? GO:0004672 ... Q3HNM4 N/A
    314222 4ysm:B (3.19) BS02 CA ? GO:0004672 ... Q3HNM4 N/A
    314223 4ysm:B (3.19) BS03 CA ? GO:0004672 ... Q3HNM4 N/A
    314224 4ysm:B (3.19) BS04 CA ? GO:0004672 ... Q3HNM4 N/A
    314225 4ysn:A (1.94) BS01 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314226 4ysn:A (1.94) BS02 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314227 4ysn:B (1.94) BS01 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314228 4ysn:B (1.94) BS02 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314229 4ysn:C (1.94) BS01 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314230 4ysn:C (1.94) BS02 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314231 4ysn:D (1.94) BS01 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314232 4ysn:D (1.94) BS02 PLP 5.1.1.21 GO:0008483 ... M1GRN3 28471367
    314233 4yso:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314234 4yso:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314235 4yso:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314236 4yso:A (1.5) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314237 4ysp:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314238 4ysp:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314239 4ysp:A (1.34) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314240 4ysp:A (1.34) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314241 4ysq:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314242 4ysq:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314243 4ysq:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314244 4ysq:A (1.5) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314245 4ysr:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314246 4ysr:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314247 4ysr:A (1.34) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314248 4ysr:A (1.34) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314249 4yss:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314250 4yss:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314251 4yss:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314252 4yss:A (1.5) BS04 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314253 4yst:A (1.34) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314254 4yst:A (1.34) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314255 4yst:A (1.34) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314256 4ysu:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314257 4ysu:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314258 4ysu:A (1.5) BS03 CU 1.7.2.1 GO:0005507 ... A4IL26 26769972
    314259 4ysw:A (1.99) BS01 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314260 4ysw:A (1.99) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314261 4ysw:A (1.99) BS03 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314262 4ysw:A (1.99) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314263 4ysw:A (1.99) BS05 NAI 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314264 4ysw:A (1.99) BS06 BCT 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314265 4ysw:A (1.99) BS07 URC 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314266 4ysw:B (1.99) BS01 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314267 4ysw:B (1.99) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314268 4ysw:B (1.99) BS03 CA 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314269 4ysw:B (1.99) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314270 4ysw:B (1.99) BS05 NAI 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314271 4ysw:B (1.99) BS06 BCT 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314272 4ysw:B (1.99) BS07 URC 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 25817260
    314273 4ysx:A (2.25) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314274 4ysx:B (2.25) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314275 4ysx:B (2.25) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314276 4ysx:B (2.25) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314277 4ysx:B (2.25) BS04 E23 1.3.5.1 GO:0005515 ... O44074 26198225 MOAD: ic50=0.0055uM
    314278 4ysx:C (2.25) BS01 E23 ? GO:0005515 ... P92506 26198225
    314279 4ysx:C (2.25) BS02 HEM ? GO:0005515 ... P92506 26198225
    314280 4ysx:C (2.25) BS03 EPH ? GO:0005515 ... P92506 26198225
    314281 4ysx:D (2.25) BS01 E23 ? GO:0005515 ... P92507 26198225
    314282 4ysx:D (2.25) BS02 HEM ? GO:0005515 ... P92507 26198225
    314283 4ysx:D (2.25) BS03 EPH ? GO:0005515 ... P92507 26198225
    314284 4ysx:E (2.25) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314285 4ysx:F (2.25) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314286 4ysx:F (2.25) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314287 4ysx:F (2.25) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314288 4ysx:F (2.25) BS04 E23 1.3.5.1 GO:0005515 ... O44074 26198225
    314289 4ysx:G (2.25) BS01 HEM ? GO:0005515 ... P92506 26198225
    314290 4ysx:G (2.25) BS02 E23 ? GO:0005515 ... P92506 26198225 MOAD: ic50=0.0055uM
    314291 4ysx:G (2.25) BS03 EPH ? GO:0005515 ... P92506 26198225
    314292 4ysx:H (2.25) BS01 HEM ? GO:0005515 ... P92507 26198225
    314293 4ysx:H (2.25) BS02 E23 ? GO:0005515 ... P92507 26198225
    314294 4ysx:H (2.25) BS03 EPH ? GO:0005515 ... P92507 26198225
    314295 4ysy:A (3.1) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314296 4ysy:B (3.1) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314297 4ysy:B (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314298 4ysy:B (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314299 4ysy:B (3.1) BS04 E24 1.3.5.1 GO:0005515 ... O44074 26198225
    314300 4ysy:C (3.1) BS01 E24 ? GO:0005515 ... P92506 26198225
    314301 4ysy:C (3.1) BS02 HEM ? GO:0005515 ... P92506 26198225
    314302 4ysy:C (3.1) BS03 EPH ? GO:0005515 ... P92506 26198225
    314303 4ysy:D (3.1) BS01 E24 ? GO:0005515 ... P92507 26198225
    314304 4ysy:D (3.1) BS02 HEM ? GO:0005515 ... P92507 26198225
    314305 4ysy:D (3.1) BS03 EPH ? GO:0005515 ... P92507 26198225
    314306 4ysy:E (3.1) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314307 4ysy:F (3.1) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314308 4ysy:F (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314309 4ysy:F (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314310 4ysy:F (3.1) BS04 E24 1.3.5.1 GO:0005515 ... O44074 26198225
    314311 4ysy:G (3.1) BS01 E24 ? GO:0005515 ... P92506 26198225
    314312 4ysy:G (3.1) BS02 HEM ? GO:0005515 ... P92506 26198225
    314313 4ysy:G (3.1) BS03 EPH ? GO:0005515 ... P92506 26198225
    314314 4ysy:H (3.1) BS01 E24 ? GO:0005515 ... P92507 26198225
    314315 4ysy:H (3.1) BS02 HEM ? GO:0005515 ... P92507 26198225
    314316 4ysy:H (3.1) BS03 EPH ? GO:0005515 ... P92507 26198225
    314317 4ysz:A (3.3) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314318 4ysz:B (3.3) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314319 4ysz:B (3.3) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314320 4ysz:B (3.3) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314321 4ysz:B (3.3) BS04 12J 1.3.5.1 GO:0005515 ... O44074 26198225
    314322 4ysz:C (3.3) BS01 HEM ? GO:0005515 ... P92506 26198225
    314323 4ysz:C (3.3) BS02 12J ? GO:0005515 ... P92506 26198225
    314324 4ysz:D (3.3) BS01 HEM ? GO:0005515 ... P92507 26198225
    314325 4ysz:D (3.3) BS02 12J ? GO:0005515 ... P92507 26198225
    314326 4ysz:D (3.3) BS03 EPH ? GO:0005515 ... P92507 26198225
    314327 4ysz:E (3.3) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314328 4ysz:F (3.3) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314329 4ysz:F (3.3) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314330 4ysz:F (3.3) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314331 4ysz:F (3.3) BS04 12J 1.3.5.1 GO:0005515 ... O44074 26198225
    314332 4ysz:G (3.3) BS01 HEM ? GO:0005515 ... P92506 26198225
    314333 4ysz:G (3.3) BS02 12J ? GO:0005515 ... P92506 26198225
    314334 4ysz:H (3.3) BS01 HEM ? GO:0005515 ... P92507 26198225
    314335 4ysz:H (3.3) BS02 12J ? GO:0005515 ... P92507 26198225
    314336 4ysz:H (3.3) BS03 EPH ? GO:0005515 ... P92507 26198225
    314337 4yt0:A (3.66) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314338 4yt0:B (3.66) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314339 4yt0:B (3.66) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314340 4yt0:B (3.66) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314341 4yt0:B (3.66) BS04 MRN 1.3.5.1 GO:0005515 ... O44074 26198225
    314342 4yt0:C (3.66) BS01 HEM ? GO:0005515 ... P92506 26198225
    314343 4yt0:C (3.66) BS02 MRN ? GO:0005515 ... P92506 26198225
    314344 4yt0:D (3.66) BS01 HEM ? GO:0005515 ... P92507 26198225
    314345 4yt0:E (3.66) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314346 4yt0:F (3.66) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314347 4yt0:F (3.66) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314348 4yt0:F (3.66) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314349 4yt0:F (3.66) BS04 MRN 1.3.5.1 GO:0005515 ... O44074 26198225
    314350 4yt0:G (3.66) BS01 HEM ? GO:0005515 ... P92506 26198225
    314351 4yt0:G (3.66) BS02 MRN ? GO:0005515 ... P92506 26198225
    314352 4yt0:H (3.66) BS01 HEM ? GO:0005515 ... P92507 26198225
    314353 4yt1:B (2.2) BS01 JJB ? GO:0003677 ... P37231 26025876
    314354 4yt3:A (1.8) BS01 HEM 1.14.15.8
    1.14.99.-
    GO:0004497 ... Q06069 26864272
    314355 4yt3:B (1.8) BS01 HEM 1.14.15.8
    1.14.99.-
    GO:0004497 ... Q06069 26864272
    314356 4yt4:A (2.2) BS01 FE9 ? GO:0016491 ... Q58734 26094576
    314357 4yt5:A (1.9) BS01 H4M ? GO:0016491 ... Q58734 26094576
    314358 4yt5:A (1.9) BS02 H4M ? GO:0016491 ... Q58734 26094576
    314359 4yt5:B (1.9) BS01 H4M ? GO:0016491 ... Q58734 26094576
    314360 4yt5:B (1.9) BS02 H4M ? GO:0016491 ... Q58734 26094576
    314361 4yt6:H (2.07) BS01 4JY 3.4.21.21 GO:0004252 ... P08709 25881820 MOAD: Ki=11nM
    BindingDB: Ki=11nM
    314362 4yt6:H (2.07) BS02 CA 3.4.21.21 GO:0004252 ... P08709 25881820
    314363 4yt7:H (2.3) BS01 4K1 3.4.21.21 GO:0004252 ... P08709 25881820 MOAD: Ki=1.7nM
    BindingDB: Ki=1.7nM
    314364 4yt7:H (2.3) BS02 CA 3.4.21.21 GO:0004252 ... P08709 25881820
    314365 4yta:A (1.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 22751665
    314366 4ytb:A (1.4) BS01 GLN 3.5.3.- GO:0004668 ... Q9RQJ2 26132828
    314367 4ytc:A (2.16) BS01 4HW 2.7.10.2 GO:0004672 ... O60674 26230873
    314368 4ytf:A (1.78) BS01 4HZ 2.7.10.2 GO:0004672 ... O60674 26230873 MOAD: Ki=0.007uM
    314369 4ytg:A (1.8) BS01 CYS 3.5.3.- GO:0004668 ... Q9RQJ2 26132828
    314370 4ytg:A (1.8) BS02 ARG 3.5.3.- GO:0004668 ... Q9RQJ2 26132828
    314371 4ytg:A (1.8) BS03 AZI 3.5.3.- GO:0004668 ... Q9RQJ2 26132828
    314372 4yth:A (2.04) BS01 467 2.7.10.2 GO:0004672 ... O60674 26230873 MOAD: Ki=0.002uM
    314373 4yti:A (2.52) BS01 VJK 2.7.10.2 GO:0004672 ... O60674 26230873 BindingDB: IC50=>10000nM, Ki=13nM
    314374 4ytm:A (3.4) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314375 4ytm:B (3.4) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314376 4ytm:B (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314377 4ytm:B (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314378 4ytm:B (3.4) BS04 F6A 1.3.5.1 GO:0005515 ... O44074 26198225
    314379 4ytm:C (3.4) BS01 HEM ? GO:0005515 ... P92506 26198225
    314380 4ytm:C (3.4) BS02 F6A ? GO:0005515 ... P92506 26198225
    314381 4ytm:C (3.4) BS03 EPH ? GO:0005515 ... P92506 26198225
    314382 4ytm:D (3.4) BS01 HEM ? GO:0005515 ... P92507 26198225
    314383 4ytm:D (3.4) BS02 F6A ? GO:0005515 ... P92507 26198225
    314384 4ytm:D (3.4) BS03 EPH ? GO:0005515 ... P92507 26198225
    314385 4ytm:E (3.4) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 26198225
    314386 4ytm:F (3.4) BS01 FES 1.3.5.1 GO:0005515 ... O44074 26198225
    314387 4ytm:F (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    314388 4ytm:F (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    314389 4ytm:F (3.4) BS04 F6A 1.3.5.1 GO:0005515 ... O44074 26198225
    314390 4ytm:G (3.4) BS01 HEM ? GO:0005515 ... P92506 26198225
    314391 4ytm:G (3.4) BS02 F6A ? GO:0005515 ... P92506 26198225
    314392 4ytm:H (3.4) BS01 HEM ? GO:0005515 ... P92507 26198225
    314393 4ytm:H (3.4) BS02 F6A ? GO:0005515 ... P92507 26198225
    314394 4ytn:A (3.0) BS01 FAD 1.3.5.1 GO:0000166 ... Q33862 N/A
    314395 4ytn:B (3.0) BS01 FES 1.3.5.1 GO:0005515 ... O44074 N/A
    314396 4ytn:B (3.0) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    314397 4ytn:B (3.0) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    314398 4ytn:B (3.0) BS04 FD8 1.3.5.1 GO:0005515 ... O44074 N/A
    314399 4ytn:C (3.0) BS01 HEM ? GO:0005515 ... P92506 N/A
    314400 4ytn:C (3.0) BS02 FD8 ? GO:0005515 ... P92506 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).