SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581 1582 1583 1584 1585 1586 1587 1588 1589 1590 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    315801 4z2e:A (3.46) BS01 dna 5.6.2.2 GO:0003677 ... Q8DPM2 N/A
    315802 4z2e:A (3.46) BS02 dna 5.6.2.2 GO:0003677 ... Q8DPM2 N/A
    315803 4z2e:B (3.46) BS01 dna 5.6.2.2 GO:0003677 ... Q8DPM2 N/A
    315804 4z2e:B (3.46) BS02 dna 5.6.2.2 GO:0003677 ... Q8DPM2 N/A
    315805 4z2e:C (3.46) BS01 dna 5.6.2.2 GO:0003677 ... P0A4M0 N/A
    315806 4z2e:D (3.46) BS01 dna 5.6.2.2 GO:0003677 ... P0A4M0 N/A
    315807 4z2e:D (3.46) BS02 dna 5.6.2.2 GO:0003677 ... P0A4M0 N/A
    315808 4z2e:D (3.46) BS03 TR6 5.6.2.2 GO:0003677 ... P0A4M0 N/A
    315809 4z2g:A (2.6) BS01 M6V 3.2.1.14 GO:0004553 ... P11797 26030312
    315810 4z2g:A (2.6) BS02 M6V 3.2.1.14 GO:0004553 ... P11797 26030312
    315811 4z2h:A (2.35) BS01 M6A 3.2.1.14 GO:0004553 ... P11797 26030312 MOAD: ic50=8.3uM
    315812 4z2i:A (2.0) BS01 M6B 3.2.1.14 GO:0004553 ... P11797 26030312 MOAD: ic50=0.036uM
    315813 4z2i:A (2.0) BS02 M6B 3.2.1.14 GO:0004553 ... P11797 26030312 MOAD: ic50=0.036uM
    315814 4z2j:A (2.6) BS01 M6G 3.2.1.14 GO:0004553 ... P11797 26030312
    315815 4z2j:A (2.6) BS02 M6G 3.2.1.14 GO:0004553 ... P11797 26030312
    315816 4z2k:A (2.3) BS01 M6E 3.2.1.14 GO:0004553 ... P11797 26030312
    315817 4z2l:A (2.3) BS01 M6F 3.2.1.14 GO:0004553 ... P11797 26030312
    315818 4z2o:A (1.17) BS01 peptide ? GO:0009374 ... A9D857 26126731
    315819 4z2p:A (1.6) BS01 peptide ? GO:0009374 ... A9D857 26126731
    315820 4z2p:B (1.6) BS01 peptide ? GO:0009374 ... A9D857 26126731
    315821 4z2r:A (2.3) BS01 FAD ? GO:0000166 ... O06647 26275805
    315822 4z2r:B (2.3) BS01 FAD ? GO:0000166 ... O06647 26275805
    315823 4z2t:A (2.45) BS01 FAD 1.14.13.44 GO:0000166 ... O06647 26275805
    315824 4z2t:B (2.45) BS01 FAD 1.14.13.44 GO:0000166 ... O06647 26275805
    315825 4z2u:A (2.5) BS01 FAD 1.14.13.44 GO:0000166 ... O06647 26275805
    315826 4z2u:B (2.5) BS01 FAD 1.14.13.44 GO:0000166 ... O06647 26275805
    315827 4z2v:A (1.39) BS01 peptide ? GO:0009374 ... A9D857 26126731
    315828 4z2v:B (1.39) BS01 peptide ? GO:0009374 ... A9D857 26126731
    315829 4z2w:A (2.5) BS01 AKG 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 26727884
    315830 4z2w:A (2.5) BS02 FE 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 26727884
    315831 4z31:A (2.5) BS01 rna 2.3.2.27 N/A Q9HBD1 26489670
    315832 4z31:A (2.5) BS02 rna 2.3.2.27 N/A Q9HBD1 26489670
    315833 4z31:A (2.5) BS03 rna 2.3.2.27 N/A Q9HBD1 26489670
    315834 4z31:B (2.5) BS01 rna 2.3.2.27 N/A Q9HBD1 26489670
    315835 4z31:B (2.5) BS02 rna 2.3.2.27 N/A Q9HBD1 26489670
    315836 4z31:B (2.5) BS03 rna 2.3.2.27 N/A Q9HBD1 26489670
    315837 4z33:A (2.45) BS01 peptide ? N/A O00560 N/A
    315838 4z33:A (2.45) BS02 IP2 ? N/A O00560 N/A
    315839 4z33:B (2.45) BS01 peptide ? N/A O00560 N/A
    315840 4z34:A (3.0) BS01 ON7 ? GO:0004930 ... P0ABE7
    Q92633
    26091040
    315841 4z35:A (2.9) BS01 ON9 ? GO:0004930 ... P0ABE7
    Q92633
    26091040
    315842 4z36:A (2.9) BS01 ON3 ? GO:0004930 ... P0ABE7
    Q92633
    26091040
    315843 4z38:A (2.8) BS01 FMN 2.3.1.39 N/A A7Z470 N/A
    315844 4z38:B (2.8) BS01 FMN 2.3.1.39 N/A A7Z470 N/A
    315845 4z3a:A (1.72) BS01 dna 3.2.2.29 GO:0000700 ... Q13569 26358812
    315846 4z3a:A (1.72) BS02 dna 3.2.2.29 GO:0000700 ... Q13569 26358812
    315847 4z3b:A (1.42) BS01 MN ? GO:0005506 ... P02791 26332099
    315848 4z3b:A (1.42) BS02 MN ? GO:0005506 ... P02791 26332099
    315849 4z3c:C (1.57) BS01 dna 1.14.11.80 GO:0003677 ... O43151 29276034
    315850 4z3c:C (1.57) BS02 dna 1.14.11.80 GO:0003677 ... O43151 29276034
    315851 4z3c:C (1.57) BS03 ZN 1.14.11.80 GO:0003677 ... O43151 29276034
    315852 4z3c:C (1.57) BS04 ZN 1.14.11.80 GO:0003677 ... O43151 29276034
    315853 4z3d:A (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    315854 4z3d:A (1.8) BS02 NDP 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805
    315855 4z3d:B (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    315856 4z3d:B (1.8) BS02 NDP 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805
    315857 4z3d:C (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    315858 4z3d:C (1.8) BS02 NDP 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805
    315859 4z3d:D (1.8) BS01 GSH 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805 MOAD: Ka=87200M^-1
    315860 4z3d:D (1.8) BS02 NDP 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... P16152 26381805
    315861 4z3e:A (1.8) BS01 GAL ? GO:0007155 ... A0A182DW20 28076665
    315862 4z3e:A (1.8) BS02 GLA ? GO:0007155 ... A0A182DW20 28076665
    315863 4z3f:A (1.8) BS01 GAL ? GO:0007155 ... A0A182DW20 28076665
    315864 4z3f:A (1.8) BS02 GLA ? GO:0007155 ... A0A182DW20 28076665
    315865 4z3g:A (1.45) BS01 GAL ? GO:0007155 ... A0A182DW20 28076665
    315866 4z3g:A (1.45) BS02 GLA ? GO:0007155 ... A0A182DW20 28076665
    315867 4z3g:B (1.45) BS01 GAL ? GO:0007155 ... A0A182DW20 28076665
    315868 4z3g:B (1.45) BS02 GLA ? GO:0007155 ... A0A182DW20 28076665
    315869 4z3h:A (1.5) BS01 GAL ? GO:0007155 ... A0A182DW20 28076665
    315870 4z3h:A (1.5) BS02 GLA ? GO:0007155 ... A0A182DW20 28076665
    315871 4z3h:A (1.5) BS03 4KS ? GO:0007155 ... A0A182DW20 28076665
    315872 4z3k:A (2.35) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 26565027
    315873 4z3k:A (2.35) BS02 4KL 1.1.1.153 GO:0004033 ... P35270 26565027 MOAD: ic50=0.15uM
    315874 4z3k:B (2.35) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 26565027
    315875 4z3k:B (2.35) BS02 4KL 1.1.1.153 GO:0004033 ... P35270 26565027 MOAD: ic50=0.15uM
    315876 4z3k:C (2.35) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 26565027
    315877 4z3k:C (2.35) BS02 4KL 1.1.1.153 GO:0004033 ... P35270 26565027 MOAD: ic50=0.15uM
    315878 4z3k:D (2.35) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 26565027
    315879 4z3k:D (2.35) BS02 4KL 1.1.1.153 GO:0004033 ... P35270 26565027 MOAD: ic50=0.15uM
    315880 4z3m:A (2.15) BS01 4KV 3.2.1.17 GO:0003796 ... P00698 26280387
    315881 4z3o:A (3.44) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315882 4z3o:A (3.44) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315883 4z3o:A (3.44) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315884 4z3o:A (3.44) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315885 4z3o:B (3.44) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315886 4z3o:B (3.44) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315887 4z3o:B (3.44) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315888 4z3o:B (3.44) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315889 4z3o:B (3.44) BS05 MFX 5.6.2.2 GO:0003677 ... P72525
    Q59961
    N/A
    315890 4z3s:10 (2.65) BS01 rna ? GO:0003735 ... P60493 26028538
    315891 4z3s:10 (2.65) BS02 rna ? GO:0003735 ... P60493 26028538
    315892 4z3s:10 (2.65) BS03 rna ? GO:0003735 ... P60493 26028538
    315893 4z3s:10 (2.65) BS04 MG ? GO:0003735 ... P60493 26028538
    315894 4z3s:11 (2.65) BS01 rna ? GO:0003735 ... P60494 26028538
    315895 4z3s:11 (2.65) BS02 MG ? GO:0003735 ... P60494 26028538
    315896 4z3s:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    315897 4z3s:12 (2.65) BS02 MG ? GO:0003735 ... Q5SHP6 26028538
    315898 4z3s:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    315899 4z3s:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    315900 4z3s:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    315901 4z3s:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    315902 4z3s:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    315903 4z3s:15 (2.65) BS01 rna ? GO:0003735 ... P80339 26028538
    315904 4z3s:15 (2.65) BS02 MG ? GO:0003735 ... P80339 26028538
    315905 4z3s:15 (2.65) BS03 MG ? GO:0003735 ... P80339 26028538
    315906 4z3s:15 (2.65) BS04 MG ? GO:0003735 ... P80339 26028538
    315907 4z3s:15 (2.65) BS05 ZN ? GO:0003735 ... P80339 26028538
    315908 4z3s:16 (2.65) BS01 rna ? GO:0000049 ... P35871 26028538
    315909 4z3s:16 (2.65) BS02 MG ? GO:0000049 ... P35871 26028538
    315910 4z3s:16 (2.65) BS03 ZN ? GO:0000049 ... P35871 26028538
    315911 4z3s:16 (2.65) BS04 MG ? GO:0000049 ... P35871 26028538
    315912 4z3s:17 (2.65) BS01 rna ? GO:0003735 ... P80340 26028538
    315913 4z3s:17 (2.65) BS02 MG ? GO:0003735 ... P80340 26028538
    315914 4z3s:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    315915 4z3s:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 26028538
    315916 4z3s:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 26028538
    315917 4z3s:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    315918 4z3s:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    315919 4z3s:1D (2.65) BS01 rna ? GO:0002181 ... P60405 26028538
    315920 4z3s:1D (2.65) BS02 rna ? GO:0002181 ... P60405 26028538
    315921 4z3s:1D (2.65) BS03 MG ? GO:0002181 ... P60405 26028538
    315922 4z3s:1D (2.65) BS04 MG ? GO:0002181 ... P60405 26028538
    315923 4z3s:1D (2.65) BS05 MG ? GO:0002181 ... P60405 26028538
    315924 4z3s:1D (2.65) BS06 MG ? GO:0002181 ... P60405 26028538
    315925 4z3s:1D (2.65) BS07 MG ? GO:0002181 ... P60405 26028538
    315926 4z3s:1D (2.65) BS08 MG ? GO:0002181 ... P60405 26028538
    315927 4z3s:1D (2.65) BS09 MG ? GO:0002181 ... P60405 26028538
    315928 4z3s:1D (2.65) BS10 MG ? GO:0002181 ... P60405 26028538
    315929 4z3s:1D (2.65) BS11 MG ? GO:0002181 ... P60405 26028538
    315930 4z3s:1D (2.65) BS12 MG ? GO:0002181 ... P60405 26028538
    315931 4z3s:1E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    315932 4z3s:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    315933 4z3s:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    315934 4z3s:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 26028538
    315935 4z3s:1F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    315936 4z3s:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    315937 4z3s:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    315938 4z3s:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    315939 4z3s:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 26028538
    315940 4z3s:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 26028538
    315941 4z3s:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 26028538
    315942 4z3s:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 26028538
    315943 4z3s:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 26028538
    315944 4z3s:1G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    315945 4z3s:1G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    315946 4z3s:1G (2.65) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    315947 4z3s:1G (2.65) BS04 MG ? GO:0000049 ... Q5SHQ0 26028538
    315948 4z3s:1G (2.65) BS05 MG ? GO:0000049 ... Q5SHQ0 26028538
    315949 4z3s:1H (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    315950 4z3s:1I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    315951 4z3s:1I (2.65) BS02 MG ? GO:0003735 ... Q5SLQ1 26028538
    315952 4z3s:1N (2.65) BS01 rna ? GO:0003729 ... P60488 26028538
    315953 4z3s:1N (2.65) BS02 MG ? GO:0003729 ... P60488 26028538
    315954 4z3s:1N (2.65) BS03 MG ? GO:0003729 ... P60488 26028538
    315955 4z3s:1N (2.65) BS04 MG ? GO:0003729 ... P60488 26028538
    315956 4z3s:1O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    315957 4z3s:1O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    315958 4z3s:1P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    315959 4z3s:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 26028538
    315960 4z3s:1P (2.65) BS03 MG ? GO:0003735 ... Q5SHQ7 26028538
    315961 4z3s:1P (2.65) BS04 MG ? GO:0003735 ... Q5SHQ7 26028538
    315962 4z3s:1P (2.65) BS05 MG ? GO:0003735 ... Q5SHQ7 26028538
    315963 4z3s:1P (2.65) BS06 MG ? GO:0003735 ... Q5SHQ7 26028538
    315964 4z3s:1Q (2.65) BS01 rna ? GO:0000049 ... P60489 26028538
    315965 4z3s:1Q (2.65) BS02 rna ? GO:0000049 ... P60489 26028538
    315966 4z3s:1Q (2.65) BS03 rna ? GO:0000049 ... P60489 26028538
    315967 4z3s:1Q (2.65) BS04 MG ? GO:0000049 ... P60489 26028538
    315968 4z3s:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 26028538
    315969 4z3s:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 26028538
    315970 4z3s:1Q (2.65) BS07 MG ? GO:0000049 ... P60489 26028538
    315971 4z3s:1R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    315972 4z3s:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 26028538
    315973 4z3s:1S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    315974 4z3s:1S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    315975 4z3s:1T (2.65) BS01 rna ? GO:0003735 ... P60490 26028538
    315976 4z3s:1T (2.65) BS02 rna ? GO:0003735 ... P60490 26028538
    315977 4z3s:1U (2.65) BS01 rna ? GO:0000027 ... P60491 26028538
    315978 4z3s:1U (2.65) BS02 MG ? GO:0000027 ... P60491 26028538
    315979 4z3s:1U (2.65) BS03 MG ? GO:0000027 ... P60491 26028538
    315980 4z3s:1U (2.65) BS04 MG ? GO:0000027 ... P60491 26028538
    315981 4z3s:1U (2.65) BS05 MG ? GO:0000027 ... P60491 26028538
    315982 4z3s:1U (2.65) BS06 MG ? GO:0000027 ... P60491 26028538
    315983 4z3s:1V (2.65) BS01 rna ? GO:0003723 ... P60492 26028538
    315984 4z3s:1V (2.65) BS02 MG ? GO:0003723 ... P60492 26028538
    315985 4z3s:1V (2.65) BS03 MG ? GO:0003723 ... P60492 26028538
    315986 4z3s:1V (2.65) BS04 MG ? GO:0003723 ... P60492 26028538
    315987 4z3s:1W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    315988 4z3s:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    315989 4z3s:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    315990 4z3s:1W (2.65) BS04 MG ? GO:0003735 ... Q5SHP3 26028538
    315991 4z3s:1W (2.65) BS05 MG ? GO:0003735 ... Q5SHP3 26028538
    315992 4z3s:1X (2.65) BS01 rna ? GO:0003735 ... Q5SHP0 26028538
    315993 4z3s:1X (2.65) BS02 MG ? GO:0003735 ... Q5SHP0 26028538
    315994 4z3s:1X (2.65) BS03 MG ? GO:0003735 ... Q5SHP0 26028538
    315995 4z3s:1X (2.65) BS04 MG ? GO:0003735 ... Q5SHP0 26028538
    315996 4z3s:1Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    315997 4z3s:1Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    315998 4z3s:1Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    315999 4z3s:1Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 26028538
    316000 4z3s:1Z (2.65) BS03 MG ? GO:0003723 ... Q5SHZ1 26028538

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).