SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    317001 4z8c:2f (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25984972
    317002 4z8c:2f (2.9) BS02 MG ? GO:0003735 ... Q5SLP8 25984972
    317003 4z8c:2g (2.9) BS01 rna ? GO:0000049 ... P17291 25984972
    317004 4z8c:2h (2.9) BS01 rna N/A GO:0003735 ... N/A 25984972
    317005 4z8c:2i (2.9) BS01 rna ? GO:0000049 ... P80374 25984972
    317006 4z8c:2i (2.9) BS02 rna ? GO:0000049 ... P80374 25984972
    317007 4z8c:2j (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25984972
    317008 4z8c:2k (2.9) BS01 rna ? GO:0003735 ... P80376 25984972
    317009 4z8c:2l (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25984972
    317010 4z8c:2l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25984972
    317011 4z8c:2l (2.9) BS03 MG ? GO:0000049 ... Q5SHN3 25984972
    317012 4z8c:2m (2.9) BS01 rna ? GO:0000049 ... P80377 25984972
    317013 4z8c:2n (2.9) BS01 rna N/A GO:0003735 ... N/A 25984972
    317014 4z8c:2n (2.9) BS02 ZN N/A GO:0003735 ... N/A 25984972
    317015 4z8c:2o (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25984972
    317016 4z8c:2o (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25984972
    317017 4z8c:2p (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25984972
    317018 4z8c:2q (2.9) BS01 rna N/A GO:0003735 ... N/A 25984972
    317019 4z8c:2r (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25984972
    317020 4z8c:2s (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25984972
    317021 4z8c:2t (2.9) BS01 rna ? GO:0003723 ... P80380 25984972
    317022 4z8c:2t (2.9) BS02 MG ? GO:0003723 ... P80380 25984972
    317023 4z8d:A (2.0) BS01 4LB 2.3.1.180 GO:0004315 ... P0A6R0 27626097 MOAD: ic50=6uM
    317024 4z8d:B (2.0) BS01 4LB 2.3.1.180 GO:0004315 ... P0A6R0 27626097 MOAD: ic50=6uM
    317025 4z8f:H (1.75) BS01 dna N/A N/A N/A 26085093
    317026 4z8f:H (1.75) BS02 dna N/A N/A N/A 26085093
    317027 4z8i:A (2.701) BS01 ZN 3.5.1.28 GO:0008061 ... A0A0R4I979 26479246
    317028 4z8j:A (0.95) BS01 peptide ? N/A Q8K4V4 N/A
    317029 4z8l:B (2.6) BS01 ZN ? GO:0019058 ... Q7ZB17 26045556
    317030 4z8l:E (2.6) BS01 ZN ? GO:0019058 ... Q7ZB17 26045556
    317031 4z8m:A (2.95) BS01 peptide 2.3.2.27 GO:0004842 ... Q9Y4K3 26385923
    317032 4z8m:A (2.95) BS02 peptide 2.3.2.27 GO:0004842 ... Q9Y4K3 26385923
    317033 4z8m:B (2.95) BS01 peptide 2.3.2.27 GO:0004842 ... Q9Y4K3 26385923
    317034 4z8m:B (2.95) BS02 peptide 2.3.2.27 GO:0004842 ... Q9Y4K3 26385923
    317035 4z8n:B (2.124) BS01 MG ? N/A A5JZ09 26715754
    317036 4z8n:B (2.124) BS02 CA ? N/A A5JZ09 26715754
    317037 4z8w:A (1.98) BS01 ZN ? GO:0005576 ... P82242 27965108
    317038 4z8x:A (3.25) BS01 ZN 3.4.24.- GO:0004176 ... O67077 26057670
    317039 4z8x:A (3.25) BS02 ADP 3.4.24.- GO:0004176 ... O67077 26057670
    317040 4z8x:B (3.25) BS01 ZN 3.4.24.- GO:0004176 ... O67077 26057670
    317041 4z8x:C (3.25) BS01 ZN 3.4.24.- GO:0004176 ... O67077 26057670
    317042 4z8x:C (3.25) BS02 ADP 3.4.24.- GO:0004176 ... O67077 26057670
    317043 4z8y:A (1.9) BS01 GDP ? GO:0003924 ... P07560 26263895
    317044 4z8y:A (1.9) BS02 ZN ? GO:0003924 ... P07560 26263895
    317045 4z8y:B (1.9) BS01 GDP ? GO:0003924 ... P07560 26263895
    317046 4z8y:B (1.9) BS02 ZN ? GO:0003924 ... P07560 26263895
    317047 4z90:F (3.0) BS01 4LE ? GO:0004888 ... E0SJQ4 26346220
    317048 4z91:A (3.3915) BS01 4LE ? GO:0004888 ... E0SJQ4 26346220
    317049 4z91:B (3.3915) BS01 4LJ ? GO:0004888 ... E0SJQ4 26346220
    317050 4z91:C (3.3915) BS01 4LJ ? GO:0004888 ... E0SJQ4 26346220
    317051 4z91:E (3.3915) BS01 4LJ ? GO:0004888 ... E0SJQ4 26346220
    317052 4z91:H (3.3915) BS01 4LJ ? GO:0004888 ... E0SJQ4 26346220
    317053 4z92:B (3.1) BS01 rna 2.7.7.48
    3.4.22.28
    3.6.1.15
    N/A Q66578 26581987
    317054 4z93:A (1.27) BS01 4LD ? N/A O60885 26080064 MOAD: Kd=44.6nM
    BindingDB: Kd=47nM, Ki=12nM, IC50=37nM
    317055 4z94:A (2.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 26370058
    317056 4z94:G (2.4) BS01 CA ? GO:0005523 ... P06396
    P28289
    P29536
    26370058
    317057 4z94:G (2.4) BS02 CA ? GO:0005523 ... P06396
    P28289
    P29536
    26370058
    317058 4z96:A (2.85) BS01 peptide 3.4.19.12 N/A Q93009 N/A
    317059 4z97:A (2.998) BS01 peptide 3.4.19.12 N/A Q93009 N/A
    317060 4z9b:A (2.41) BS01 B85 3.1.3.2
    3.1.3.48
    GO:0003993 ... P24666 26117648
    317061 4z9d:A (1.8) BS01 NAD N/A GO:0003950 ... N/A 28663369
    317062 4z9d:B (1.8) BS01 NAD N/A GO:0003950 ... N/A 28663369
    317063 4z9d:C (1.8) BS01 NAD N/A GO:0003950 ... N/A 28663369
    317064 4z9d:D (1.8) BS01 NAD N/A GO:0003950 ... N/A 28663369
    317065 4z9g:A (3.183) BS01 1Q5 3.2.1.17 GO:0003796 ... C3V2B5
    P34998
    28183242
    317066 4z9g:B (3.183) BS01 1Q5 3.2.1.17 GO:0003796 ... C3V2B5
    P34998
    28183242
    317067 4z9g:C (3.183) BS01 1Q5 3.2.1.17 GO:0003796 ... C3V2B5
    P34998
    28183242
    317068 4z9h:A (1.452) BS01 ASP ? GO:0006935 ... P07017 27292793
    317069 4z9h:B (1.452) BS01 ASP ? GO:0006935 ... P07017 27292793
    317070 4z9i:A (1.57) BS01 ASP ? GO:0006935 ... P07017 27292793
    317071 4z9i:B (1.57) BS01 ASP ? GO:0006935 ... P07017 27292793
    317072 4z9k:A (1.5) BS01 ZN 3.2.2.22 GO:0017148 ... P02879 27159829
    317073 4z9l:A (2.1) BS01 ANP 2.7.11.24 GO:0004672 ... P53779 12954329
    317074 4z9l:A (2.1) BS02 880 2.7.11.24 GO:0004672 ... P53779 12954329 MOAD: ic50=1.6nM
    BindingDB: IC50=1.6nM
    317075 4z9m:A (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317076 4z9m:B (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317077 4z9m:C (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317078 4z9m:D (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317079 4z9m:E (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317080 4z9m:F (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317081 4z9m:G (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317082 4z9m:H (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P17540 N/A
    317083 4z9n:A (1.745) BS01 GSH ? GO:0006865 ... A0A0M3KL33 N/A
    317084 4z9n:B (1.745) BS01 GSH ? GO:0006865 ... A0A0M3KL33 N/A
    317085 4z9n:C (1.745) BS01 GSH ? GO:0006865 ... A0A0M3KL33 N/A
    317086 4z9n:D (1.745) BS01 GSH ? GO:0006865 ... A0A0M3KL33 N/A
    317087 4z9n:E (1.745) BS01 GSH ? GO:0006865 ... A0A0M3KL33 N/A
    317088 4z9n:F (1.745) BS01 GSH ? GO:0006865 ... A0A0M3KL33 N/A
    317089 4z9r:A (2.8) BS01 NAD ? GO:0000166 ... Q8EGK4 N/A
    317090 4z9r:A (2.8) BS02 FMN ? GO:0000166 ... Q8EGK4 N/A
    317091 4z9r:B (2.8) BS01 NAD ? GO:0000166 ... Q8EGK4 N/A
    317092 4z9r:B (2.8) BS02 FMN ? GO:0000166 ... Q8EGK4 N/A
    317093 4z9v:A (2.099) BS01 peptide ? GO:0042981 ... Q07817 26813996
    317094 4z9v:A (2.099) BS02 peptide ? GO:0042981 ... Q07817 26813996
    317095 4z9v:A (2.099) BS03 peptide ? GO:0042981 ... Q07817 26813996
    317096 4z9v:A (2.099) BS04 peptide ? GO:0042981 ... Q07817 26813996
    317097 4z9v:A (2.099) BS05 peptide ? GO:0042981 ... Q07817 26813996
    317098 4z9v:A (2.099) BS06 BCT ? GO:0042981 ... Q07817 26813996
    317099 4z9v:B (2.099) BS01 peptide ? GO:0042981 ... Q07817 26813996
    317100 4z9v:B (2.099) BS02 peptide ? GO:0042981 ... Q07817 26813996
    317101 4z9v:B (2.099) BS03 peptide ? GO:0042981 ... Q07817 26813996
    317102 4z9v:B (2.099) BS04 peptide ? GO:0042981 ... Q07817 26813996
    317103 4z9v:B (2.099) BS05 peptide ? GO:0042981 ... Q07817 26813996
    317104 4z9v:B (2.099) BS06 BCT ? GO:0042981 ... Q07817 26813996
    317105 4za0:A (2.31) BS01 MG 4.2.1.11 GO:0000015 ... P09104 27723749
    317106 4za0:A (2.31) BS02 PAH 4.2.1.11 GO:0000015 ... P09104 27723749 BindingDB: IC50=62.3nM
    317107 4za0:B (2.31) BS01 MG 4.2.1.11 GO:0000015 ... P09104 27723749
    317108 4za0:B (2.31) BS02 PAH 4.2.1.11 GO:0000015 ... P09104 27723749 BindingDB: IC50=62.3nM
    317109 4za2:D (1.55) BS01 NAD N/A GO:0008678 ... N/A 27028675
    317110 4za4:A (1.22) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317111 4za4:A (1.22) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317112 4za5:A (1.1) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317113 4za5:A (1.1) BS02 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317114 4za5:A (1.1) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317115 4za6:A (1.97) BS01 CA ? N/A A0A0C2W9F0 26554837
    317116 4za7:A (1.1) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317117 4za7:A (1.1) BS02 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317118 4za7:A (1.1) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317119 4za7:A (1.1) BS04 4LV 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317120 4za8:A (1.06) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317121 4za8:A (1.06) BS02 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317122 4za8:A (1.06) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317123 4za8:A (1.06) BS04 F5C 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317124 4za9:A (1.01) BS01 4MJ 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317125 4za9:A (1.01) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317126 4zaa:A (1.242) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317127 4zaa:A (1.242) BS02 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317128 4zaa:A (1.242) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317129 4zaa:A (1.242) BS04 4M4 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317130 4zaa:A (1.242) BS05 4M4 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317131 4zab:A (1.16) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317132 4zab:A (1.16) BS02 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317133 4zab:A (1.16) BS03 MN 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317134 4zab:A (1.16) BS04 4LW 4.1.1.102 GO:0005737 ... A2QHE5 26083754
    317135 4zac:A (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    317136 4zac:A (1.65) BS02 4LU 4.1.1.102 GO:0005737 ... Q03034 26083754
    317137 4zac:B (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    317138 4zac:B (1.65) BS02 4LU 4.1.1.102 GO:0005737 ... Q03034 26083754
    317139 4zac:C (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    317140 4zac:C (1.65) BS02 4LU 4.1.1.102 GO:0005737 ... Q03034 26083754
    317141 4zac:D (1.65) BS01 MN 4.1.1.102 GO:0005737 ... Q03034 26083754
    317142 4zac:D (1.65) BS02 4LU 4.1.1.102 GO:0005737 ... Q03034 26083754
    317143 4zad:A (2.46) BS01 MN 4.1.1.102 GO:0005737 ... B9WJ66 26083754
    317144 4zad:A (2.46) BS02 4LU 4.1.1.102 GO:0005737 ... B9WJ66 26083754
    317145 4zad:B (2.46) BS01 MN 4.1.1.102 GO:0005737 ... B9WJ66 26083754
    317146 4zad:B (2.46) BS02 4LU 4.1.1.102 GO:0005737 ... B9WJ66 26083754
    317147 4zae:A (1.86) BS01 4M1 3.4.21.22 GO:0004252 ... P00740 25978966 MOAD: Ki=3.6nM
    BindingDB: Ki=3.6nM, IC50=3.64nM
    317148 4zaf:A (1.71) BS01 4LR 2.5.1.129 GO:0003824 ... Q9HX08 26083743 MOAD: Kd=12uM
    317149 4zag:A (1.68) BS01 4LR 2.5.1.129 GO:0003824 ... Q9HX08 26083743 MOAD: Kd=12uM
    317150 4zah:A (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317151 4zah:B (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317152 4zah:B (2.24) BS02 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317153 4zah:C (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317154 4zah:D (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317155 4zah:D (2.24) BS02 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317156 4zah:E (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317157 4zah:F (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317158 4zah:G (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317159 4zah:H (2.24) BS01 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317160 4zah:H (2.24) BS02 T5K 2.6.1.59 GO:0000271 ... P27833 26023720
    317161 4zak:A (2.824) BS01 4LX ? N/A P11609 26078271
    317162 4zak:C (2.824) BS01 4LX ? GO:0002250 ... A0A0B4J1J9
    A0A0G2JG46
    K7N5M3
    26078271
    317163 4zal:A (1.62) BS01 4LR 2.5.1.129 GO:0003824 ... Q9HX08 26083743 MOAD: Kd=12uM
    317164 4zam:A (1.42) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 26340563
    317165 4zam:A (1.42) BS02 NXL 3.5.2.6 GO:0008800 ... P0AD64 26340563
    317166 4zan:A (1.76) BS01 4LR 2.5.1.129 GO:0003824 ... Q9HX08 26083743 MOAD: Kd=12uM
    317167 4zao:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26457530
    317168 4zar:A (1.15) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 N/A
    317169 4zar:A (1.15) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    317170 4zar:A (1.15) BS03 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    317171 4zas:A (2.47) BS01 T46 ? GO:0000271 ... Q8KND8 N/A
    317172 4zas:B (2.47) BS01 T46 ? GO:0000271 ... Q8KND8 N/A
    317173 4zas:D (2.47) BS01 TYD ? GO:0000271 ... Q8KND8 N/A
    317174 4zas:E (2.47) BS01 TYD ? GO:0000271 ... Q8KND8 N/A
    317175 4zas:F (2.47) BS01 TYD ? GO:0000271 ... Q8KND8 N/A
    317176 4zau:A (2.8) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 26522274 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    317177 4zav:A (1.4) BS01 4LS 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317178 4zav:A (1.4) BS02 PO4 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317179 4zaw:A (1.89) BS01 4LU 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317180 4zaw:A (1.89) BS02 PO4 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317181 4zaw:A (1.89) BS03 PO4 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317182 4zax:A (1.61) BS01 4LU 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317183 4zax:A (1.61) BS02 PO4 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317184 4zay:A (1.54) BS01 4LS 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317185 4zaz:A (1.45) BS01 4LS 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317186 4zaz:A (1.45) BS02 PO4 2.5.1.129 GO:0003824 ... Q9HX08 26083743
    317187 4zb0:A (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317188 4zb0:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317189 4zb0:A (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317190 4zb0:A (2.0) BS04 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    317191 4zb0:A (2.0) BS05 FRU 5.3.1.5 GO:0000287 ... P24300 27139626
    317192 4zb0:A (2.0) BS06 FRU 5.3.1.5 GO:0000287 ... P24300 27139626
    317193 4zb0:B (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317194 4zb0:B (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317195 4zb0:B (2.0) BS03 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317196 4zb0:B (2.0) BS04 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317197 4zb0:B (2.0) BS05 GLC 5.3.1.5 GO:0000287 ... P24300 27139626
    317198 4zb0:B (2.0) BS06 FRU 5.3.1.5 GO:0000287 ... P24300 27139626
    317199 4zb2:A (2.0) BS01 MN 5.3.1.5 GO:0000287 ... P24300 27139626
    317200 4zb2:A (2.0) BS02 MN 5.3.1.5 GO:0000287 ... P24300 27139626

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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