SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    317601 4zer:2D (3.1) BS01 rna ? GO:0002181 ... P60405 25984971
    317602 4zer:2D (3.1) BS02 rna ? GO:0002181 ... P60405 25984971
    317603 4zer:2D (3.1) BS03 MG ? GO:0002181 ... P60405 25984971
    317604 4zer:2D (3.1) BS04 MG ? GO:0002181 ... P60405 25984971
    317605 4zer:2D (3.1) BS05 MG ? GO:0002181 ... P60405 25984971
    317606 4zer:2D (3.1) BS06 MG ? GO:0002181 ... P60405 25984971
    317607 4zer:2D (3.1) BS07 MG ? GO:0002181 ... P60405 25984971
    317608 4zer:2E (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 25984971
    317609 4zer:2E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 25984971
    317610 4zer:2F (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 25984971
    317611 4zer:2F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 25984971
    317612 4zer:2G (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 25984971
    317613 4zer:2G (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 25984971
    317614 4zer:2G (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 25984971
    317615 4zer:2G (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 25984971
    317616 4zer:2H (3.1) BS01 rna ? GO:0002181 ... P0DOY8 25984971
    317617 4zer:2I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 25984971
    317618 4zer:2N (3.1) BS01 rna ? GO:0003729 ... P60488 25984971
    317619 4zer:2O (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 25984971
    317620 4zer:2O (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 25984971
    317621 4zer:2P (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 25984971
    317622 4zer:2Q (3.1) BS01 rna ? GO:0000049 ... P60489 25984971
    317623 4zer:2Q (3.1) BS02 rna ? GO:0000049 ... P60489 25984971
    317624 4zer:2R (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 25984971
    317625 4zer:2S (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 25984971
    317626 4zer:2S (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 25984971
    317627 4zer:2T (3.1) BS01 rna ? GO:0003735 ... P60490 25984971
    317628 4zer:2T (3.1) BS02 rna ? GO:0003735 ... P60490 25984971
    317629 4zer:2U (3.1) BS01 rna ? GO:0000027 ... P60491 25984971
    317630 4zer:2V (3.1) BS01 rna ? GO:0003723 ... P60492 25984971
    317631 4zer:2V (3.1) BS02 MG ? GO:0003723 ... P60492 25984971
    317632 4zer:2V (3.1) BS03 MG ? GO:0003723 ... P60492 25984971
    317633 4zer:2W (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 25984971
    317634 4zer:2X (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 25984971
    317635 4zer:2Y (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 25984971
    317636 4zer:2Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 25984971
    317637 4zer:2Z (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 25984971
    317638 4zer:2Z (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 25984971
    317639 4zer:2Z (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 25984971
    317640 4zer:2b (3.1) BS01 rna ? GO:0003735 ... P80371 25984971
    317641 4zer:2c (3.1) BS01 rna ? GO:0003676 ... P80372 25984971
    317642 4zer:2d (3.1) BS01 rna ? GO:0003723 ... P80373 25984971
    317643 4zer:2d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    317644 4zer:2e (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 25984971
    317645 4zer:2f (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 25984971
    317646 4zer:2f (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 25984971
    317647 4zer:2g (3.1) BS01 rna ? GO:0000049 ... P17291 25984971
    317648 4zer:2h (3.1) BS01 rna ? GO:0003735 ... P0DOY9 25984971
    317649 4zer:2i (3.1) BS01 rna ? GO:0000049 ... P80374 25984971
    317650 4zer:2j (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 25984971
    317651 4zer:2j (3.1) BS02 MG ? GO:0000049 ... Q5SHN7 25984971
    317652 4zer:2k (3.1) BS01 rna ? GO:0003735 ... P80376 25984971
    317653 4zer:2k (3.1) BS02 MG ? GO:0003735 ... P80376 25984971
    317654 4zer:2l (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 25984971
    317655 4zer:2m (3.1) BS01 rna ? GO:0000049 ... P80377 25984971
    317656 4zer:2n (3.1) BS01 rna ? GO:0003735 ... P0DOY6 25984971
    317657 4zer:2n (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 25984971
    317658 4zer:2o (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 25984971
    317659 4zer:2o (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 25984971
    317660 4zer:2p (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 25984971
    317661 4zer:2q (3.1) BS01 rna N/A GO:0003735 ... N/A 25984971
    317662 4zer:2r (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 25984971
    317663 4zer:2s (3.1) BS01 rna ? GO:0003723 ... Q5SHP2 25984971
    317664 4zer:2t (3.1) BS01 rna ? GO:0003723 ... P80380 25984971
    317665 4zes:A (1.65) BS01 MMA ? N/A Q8WTT0 25995448 MOAD: Ki=9.4mM
    317666 4zes:A (1.65) BS02 CA ? N/A Q8WTT0 25995448
    317667 4zes:B (1.65) BS01 MMA ? N/A Q8WTT0 25995448 MOAD: Ki=9.4mM
    317668 4zes:B (1.65) BS02 CA ? N/A Q8WTT0 25995448
    317669 4zet:A (2.9) BS01 MAN ? N/A Q8WTT0 25995448
    317670 4zet:A (2.9) BS02 GAL ? N/A Q8WTT0 25995448
    317671 4zet:A (2.9) BS03 CA ? N/A Q8WTT0 25995448
    317672 4zet:B (2.9) BS01 MAN ? N/A Q8WTT0 25995448
    317673 4zet:B (2.9) BS02 CA ? N/A Q8WTT0 25995448
    317674 4zev:A (1.8) BS01 MG 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317675 4zev:A (1.8) BS02 M6P 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317676 4zev:B (1.8) BS01 MG 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317677 4zev:B (1.8) BS02 PO4 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317678 4zew:A (1.9) BS01 MG 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317679 4zew:A (1.9) BS02 G6P 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317680 4zew:B (1.9) BS01 MG 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317681 4zew:B (1.9) BS02 PO4 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317682 4zex:A (2.0) BS01 MG 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317683 4zex:A (2.0) BS02 G3H 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317684 4zex:B (2.0) BS01 MG 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317685 4zex:B (2.0) BS02 PO4 3.8.1.- GO:0005737 ... Q8IJ74 26327372
    317686 4zf6:A (2.773) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    317687 4zf8:A (2.766) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    317688 4zf8:A (2.766) BS02 MYT 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    317689 4zfa:A (2.765) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    317690 4zfb:A (2.84) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    317691 4zfb:A (2.84) BS02 PLM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27267136
    317692 4zfc:A (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 26362498
    317693 4zfc:A (2.0) BS02 GCZ 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 26362498 MOAD: ic50=19.62uM
    317694 4zfc:B (2.0) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 26362498
    317695 4zfc:B (2.0) BS02 GCZ 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64
    GO:0001523 ... P42330 26362498 MOAD: ic50=19.62uM
    317696 4zfg:A (2.27) BS01 CA ? GO:0007596 ... O15123 26088137
    317697 4zfh:A (1.89) BS01 MG N/A N/A N/A N/A
    317698 4zfh:A (1.89) BS02 MG N/A N/A N/A N/A
    317699 4zfh:A (1.89) BS03 MG N/A N/A N/A N/A
    317700 4zfh:A (1.89) BS04 MG N/A N/A N/A N/A
    317701 4zfi:A (2.0) BS01 4NJ 2.3.2.27 GO:0005634 ... Q00987 27709883 MOAD: Kd=0.5uM
    317702 4zfi:B (2.0) BS01 4NJ 2.3.2.27 GO:0005634 ... Q00987 27709883 MOAD: Kd=0.5uM
    317703 4zfi:C (2.0) BS01 4NJ 2.3.2.27 GO:0005634 ... Q00987 27709883 MOAD: Kd=0.5uM
    317704 4zfi:D (2.0) BS01 4NJ 2.3.2.27 GO:0005634 ... Q00987 27709883 MOAD: Kd=0.5uM
    317705 4zfk:A (1.82) BS01 GLN 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317706 4zfk:B (1.82) BS01 GLN 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317707 4zfk:C (1.82) BS01 GLN 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317708 4zfk:D (1.82) BS01 GLN 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317709 4zfl:A (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317710 4zfl:A (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317711 4zfl:B (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317712 4zfl:C (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317713 4zfl:C (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317714 4zfl:D (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317715 4zfl:D (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317716 4zfl:E (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317717 4zfl:E (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317718 4zfl:F (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317719 4zfl:F (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317720 4zfl:G (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317721 4zfl:G (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317722 4zfl:H (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317723 4zfl:H (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317724 4zfl:I (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317725 4zfl:I (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317726 4zfl:J (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317727 4zfl:J (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317728 4zfl:K (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317729 4zfl:K (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317730 4zfl:L (1.7) BS01 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317731 4zfl:L (1.7) BS02 4NK 3.5.1.118 GO:0016787 ... A0R5M9 26079795
    317732 4zfm:A (1.4) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    317733 4zfm:B (1.4) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    317734 4zfm:C (1.4) BS01 0WK 3.2.1.85 GO:0004553 ... W8QF82 N/A
    317735 4zfm:C (1.4) BS02 BGC 3.2.1.85 GO:0004553 ... W8QF82 N/A
    317736 4zfm:D (1.4) BS01 BGC 3.2.1.85 GO:0004553 ... W8QF82 N/A
    317737 4zfm:D (1.4) BS02 0WK 3.2.1.85 GO:0004553 ... W8QF82 N/A
    317738 4zfn:A (1.901) BS01 5GP 2.4.2.- GO:0016757 ... Q97W22 N/A
    317739 4zfn:B (1.901) BS01 5GP 2.4.2.- GO:0016757 ... Q97W22 N/A
    317740 4zfp:A (1.96) BS01 AU 3.2.1.17 GO:0003796 ... P00698 26054833
    317741 4zfq:A (2.799) BS01 DWZ 2.3.2.- GO:0005576 ... P9WKV2 26304120
    317742 4zfr:A (1.72) BS01 ZN 3.4.19.- GO:0008233 ... Q9P371 N/A
    317743 4zfr:A (1.72) BS02 ZN 3.4.19.- GO:0008233 ... Q9P371 N/A
    317744 4zft:A (2.304) BS01 ZN 3.4.19.- GO:0008233 ... Q9P371 N/A
    317745 4zft:A (2.304) BS02 ZN 3.4.19.- GO:0008233 ... Q9P371 N/A
    317746 4zft:C (2.304) BS01 ZN 3.4.19.- GO:0008233 ... Q9P371 N/A
    317747 4zft:C (2.304) BS02 ZN 3.4.19.- GO:0008233 ... Q9P371 N/A
    317748 4zfv:A (1.5) BS01 ADP 2.7.1.232 GO:0000166 ... B3VI55 26354439
    317749 4zfv:B (1.5) BS01 ADP 2.7.1.232 GO:0000166 ... B3VI55 26354439
    317750 4zfw:B (2.54) BS01 GLA 3.2.2.22 N/A B7X8M2 26648038
    317751 4zfw:B (2.54) BS02 GAL 3.2.2.22 N/A B7X8M2 26648038
    317752 4zfx:A (2.55) BS01 EB4 ? GO:0005506 ... P80188 26240330
    317753 4zfx:C (2.55) BS01 EB4 ? GO:0005506 ... P80188 26240330
    317754 4zfy:B (2.42) BS01 AMG 3.2.2.22 N/A B7X8M2 26648038
    317755 4zfz:A (1.763) BS01 peptide ? N/A K4MU32 26758274
    317756 4zfz:A (1.763) BS02 ZN ? N/A K4MU32 26758274
    317757 4zfz:A (1.763) BS03 ZN ? N/A K4MU32 26758274
    317758 4zfz:A (1.763) BS04 ZN ? N/A K4MU32 26758274
    317759 4zfz:A (1.763) BS05 MYR ? N/A K4MU32 26758274
    317760 4zfz:D (1.763) BS01 peptide ? N/A K4MU32 26758274
    317761 4zfz:D (1.763) BS02 ZN ? N/A K4MU32 26758274
    317762 4zfz:D (1.763) BS03 ZN ? N/A K4MU32 26758274
    317763 4zfz:D (1.763) BS04 MYR ? N/A K4MU32 26758274
    317764 4zfz:G (1.763) BS01 peptide ? N/A K4MU32 26758274
    317765 4zfz:G (1.763) BS02 ZN ? N/A K4MU32 26758274
    317766 4zfz:J (1.763) BS01 peptide ? N/A K4MU32 26758274
    317767 4zfz:J (1.763) BS02 ZN ? N/A K4MU32 26758274
    317768 4zfz:J (1.763) BS03 ZN ? N/A K4MU32 26758274
    317769 4zg4:B (2.36) BS01 MG ? GO:0003774 ... Q9NQX4 26976594
    317770 4zg4:B (2.36) BS02 ADP ? GO:0003774 ... Q9NQX4 26976594
    317771 4zg4:E (2.36) BS01 MG ? GO:0003774 ... Q9NQX4 26976594
    317772 4zg4:E (2.36) BS02 ADP ? GO:0003774 ... Q9NQX4 26976594
    317773 4zg5:A (1.9) BS01 MG 3.1.3.5 GO:0000166 ... B2S5B9 27139831
    317774 4zg5:C (1.9) BS01 MG 3.1.3.5 GO:0000166 ... B2S5B9 27139831
    317775 4zg5:D (1.9) BS01 MG 3.1.3.5 GO:0000166 ... B2S5B9 27139831
    317776 4zg5:G (1.9) BS01 MG 3.1.3.5 GO:0000166 ... B2S5B9 27139831
    317777 4zg6:A (1.8) BS01 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317778 4zg6:A (1.8) BS02 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317779 4zg6:A (1.8) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 26371182
    317780 4zg6:A (1.8) BS04 4NY 3.1.4.39 GO:0003676 ... Q13822 26371182 MOAD: ic50=0.011uM
    317781 4zg6:B (1.8) BS01 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317782 4zg6:B (1.8) BS02 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317783 4zg6:B (1.8) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 26371182
    317784 4zg6:B (1.8) BS04 4NY 3.1.4.39 GO:0003676 ... Q13822 26371182 MOAD: ic50=0.011uM
    317785 4zg7:A (1.75) BS01 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317786 4zg7:A (1.75) BS02 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317787 4zg7:A (1.75) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 26371182
    317788 4zg7:A (1.75) BS04 4O0 3.1.4.39 GO:0003676 ... Q13822 26371182 MOAD: ic50=0.002uM
    317789 4zg7:A (1.75) BS05 NKN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317790 4zg8:A (1.39) BS01 CA 3.2.1.4 GO:0004553 ... F2Z7L1 N/A
    317791 4zg8:B (1.39) BS01 CA 3.2.1.4 GO:0004553 ... F2Z7L1 N/A
    317792 4zg9:A (2.95) BS01 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317793 4zg9:A (2.95) BS02 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317794 4zg9:A (2.95) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 26371182
    317795 4zg9:A (2.95) BS04 4O2 3.1.4.39 GO:0003676 ... Q13822 26371182 BindingDB: IC50=<500nM
    317796 4zg9:A (2.95) BS05 4O2 3.1.4.39 GO:0003676 ... Q13822 26371182 BindingDB: IC50=<500nM
    317797 4zg9:B (2.95) BS01 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317798 4zg9:B (2.95) BS02 ZN 3.1.4.39 GO:0003676 ... Q13822 26371182
    317799 4zg9:B (2.95) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 26371182
    317800 4zg9:B (2.95) BS04 4O2 3.1.4.39 GO:0003676 ... Q13822 26371182 BindingDB: IC50=<500nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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