SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31801 1m1k:J (3.2) BS01 rna ? GO:0003735 ... P60617 12150912
    31802 1m1k:K (3.2) BS01 rna ? GO:0003729 ... P29198 12150912
    31803 1m1k:L (3.2) BS01 rna ? GO:0003735 ... P22450 12150912
    31804 1m1k:M (3.2) BS01 rna ? GO:0003735 ... P12737 12150912
    31805 1m1k:N (3.2) BS01 rna ? GO:0002181 ... P60618 12150912
    31806 1m1k:O (3.2) BS01 rna ? GO:0000027 ... P14123 12150912
    31807 1m1k:O (3.2) BS02 rna ? GO:0000027 ... P14123 12150912
    31808 1m1k:P (3.2) BS01 rna ? GO:0003723 ... P12733 12150912
    31809 1m1k:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12150912
    31810 1m1k:R (3.2) BS01 rna ? GO:0003735 ... P12734 12150912
    31811 1m1k:R (3.2) BS02 rna ? GO:0003735 ... P12734 12150912
    31812 1m1k:S (3.2) BS01 rna ? GO:0002181 ... P10970 12150912
    31813 1m1k:T (3.2) BS01 rna ? GO:0003735 ... P12732 12150912
    31814 1m1k:U (3.2) BS01 rna ? GO:0003723 ... P10972 12150912
    31815 1m1k:U (3.2) BS02 MG ? GO:0003723 ... P10972 12150912
    31816 1m1k:V (3.2) BS01 rna ? GO:0003735 ... P14116 12150912
    31817 1m1k:W (3.2) BS01 rna ? GO:0003735 ... P10971 12150912
    31818 1m1k:X (3.2) BS01 rna ? GO:0000463 ... P14121 12150912
    31819 1m1k:X (3.2) BS02 rna ? GO:0000463 ... P14121 12150912
    31820 1m1k:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12150912
    31821 1m1k:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12150912
    31822 1m1k:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12150912
    31823 1m1n:A (1.16) BS01 CFN 1.18.6.1 GO:0009399 ... P07328 12215645
    31824 1m1n:A (1.16) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12215645
    31825 1m1n:B (1.16) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31826 1m1n:B (1.16) BS02 CLF 1.18.6.1 GO:0009399 ... P07329 12215645
    31827 1m1n:B (1.16) BS03 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31828 1m1n:C (1.16) BS01 CFN 1.18.6.1 GO:0009399 ... P07328 12215645
    31829 1m1n:C (1.16) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12215645
    31830 1m1n:D (1.16) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31831 1m1n:D (1.16) BS02 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31832 1m1n:D (1.16) BS03 CLF 1.18.6.1 GO:0009399 ... P07329 12215645
    31833 1m1n:E (1.16) BS01 CFN 1.18.6.1 GO:0009399 ... P07328 12215645
    31834 1m1n:E (1.16) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12215645
    31835 1m1n:F (1.16) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31836 1m1n:F (1.16) BS02 CLF 1.18.6.1 GO:0009399 ... P07329 12215645
    31837 1m1n:F (1.16) BS03 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31838 1m1n:G (1.16) BS01 CFN 1.18.6.1 GO:0009399 ... P07328 12215645
    31839 1m1n:G (1.16) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12215645
    31840 1m1n:H (1.16) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31841 1m1n:H (1.16) BS02 CA 1.18.6.1 GO:0009399 ... P07329 12215645
    31842 1m1n:H (1.16) BS03 CLF 1.18.6.1 GO:0009399 ... P07329 12215645
    31843 1m1o:A (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    31844 1m1o:B (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    31845 1m1p:A (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31846 1m1p:A (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31847 1m1p:A (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31848 1m1p:A (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31849 1m1p:B (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31850 1m1p:B (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31851 1m1p:B (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31852 1m1p:B (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31853 1m1p:C (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31854 1m1p:C (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31855 1m1p:C (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31856 1m1p:C (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31857 1m1p:D (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31858 1m1p:D (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31859 1m1p:D (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31860 1m1p:D (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31861 1m1p:E (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31862 1m1p:E (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31863 1m1p:E (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31864 1m1p:E (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31865 1m1p:E (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    31866 1m1p:F (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31867 1m1p:F (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31868 1m1p:F (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31869 1m1p:F (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31870 1m1p:F (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    31871 1m1q:A (0.97) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31872 1m1q:A (0.97) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31873 1m1q:A (0.97) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31874 1m1q:A (0.97) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31875 1m1r:A (1.02) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    31876 1m1r:A (1.02) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    31877 1m1r:A (1.02) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    31878 1m1r:A (1.02) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    31879 1m1u:A (2.3) BS01 CA ? N/A P11215 11034990
    31880 1m1x:A (3.3) BS01 MN ? GO:0001525 ... P06756 11884718
    31881 1m1x:A (3.3) BS02 MN ? GO:0001525 ... P06756 11884718
    31882 1m1x:A (3.3) BS03 MN ? GO:0001525 ... P06756 11884718
    31883 1m1x:A (3.3) BS04 MN ? GO:0001525 ... P06756 11884718
    31884 1m1x:A (3.3) BS05 MN ? GO:0001525 ... P06756 11884718
    31885 1m1x:B (3.3) BS01 MN ? GO:0001525 ... P05106 11884718
    31886 1m1y:A (3.2) BS01 CFM 1.18.6.1 GO:0009399 ... P07328 12501184
    31887 1m1y:A (3.2) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12501184
    31888 1m1y:B (3.2) BS01 CLF 1.18.6.1 GO:0009399 ... P07329 12501184
    31889 1m1y:B (3.2) BS02 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31890 1m1y:B (3.2) BS03 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31891 1m1y:C (3.2) BS01 CFM 1.18.6.1 GO:0009399 ... P07328 12501184
    31892 1m1y:C (3.2) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12501184
    31893 1m1y:D (3.2) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31894 1m1y:D (3.2) BS02 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31895 1m1y:D (3.2) BS03 CLF 1.18.6.1 GO:0009399 ... P07329 12501184
    31896 1m1y:E (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31897 1m1y:F (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31898 1m1y:G (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31899 1m1y:H (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31900 1m1y:I (3.2) BS01 CFM 1.18.6.1 GO:0009399 ... P07328 12501184
    31901 1m1y:I (3.2) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12501184
    31902 1m1y:J (3.2) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31903 1m1y:J (3.2) BS02 CLF 1.18.6.1 GO:0009399 ... P07329 12501184
    31904 1m1y:J (3.2) BS03 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31905 1m1y:K (3.2) BS01 CFM 1.18.6.1 GO:0009399 ... P07328 12501184
    31906 1m1y:K (3.2) BS02 CLF 1.18.6.1 GO:0009399 ... P07328 12501184
    31907 1m1y:L (3.2) BS01 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31908 1m1y:L (3.2) BS02 CLF 1.18.6.1 GO:0009399 ... P07329 12501184
    31909 1m1y:L (3.2) BS03 CA 1.18.6.1 GO:0009399 ... P07329 12501184
    31910 1m1y:M (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31911 1m1y:N (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31912 1m1y:O (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31913 1m1y:P (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    31914 1m20:A (1.8) BS01 HEM ? GO:0020037 ... P00171 12199707
    31915 1m21:A (1.8) BS01 peptide 3.5.1.- GO:0004040 ... Q8RJN5 12367528
    31916 1m21:B (1.8) BS01 peptide 3.5.1.- GO:0004040 ... Q8RJN5 12367528
    31917 1m26:A (1.62) BS01 peptide ? GO:0019862 ... P18670 12206779
    31918 1m26:A (1.62) BS02 peptide ? GO:0019862 ... P18670 12206779
    31919 1m26:A (1.62) BS03 peptide ? GO:0019862 ... P18670 12206779
    31920 1m26:C (1.62) BS01 peptide ? GO:0019862 ... P18670 12206779
    31921 1m26:C (1.62) BS02 peptide ? GO:0019862 ... P18670 12206779
    31922 1m26:C (1.62) BS03 peptide ? GO:0019862 ... P18670 12206779
    31923 1m26:E (1.62) BS01 peptide ? GO:0019862 ... P18670 12206779
    31924 1m26:E (1.62) BS02 peptide ? GO:0019862 ... P18670 12206779
    31925 1m26:E (1.62) BS03 peptide ? GO:0019862 ... P18670 12206779
    31926 1m26:G (1.62) BS01 peptide ? GO:0019862 ... P18670 12206779
    31927 1m26:G (1.62) BS02 peptide ? GO:0019862 ... P18670 12206779
    31928 1m26:G (1.62) BS03 peptide ? GO:0019862 ... P18670 12206779
    31929 1m27:A (2.5) BS01 peptide ? GO:0005737 ... O60880 12545174
    31930 1m2a:A (1.5) BS01 FES ? N/A O66511 12089152
    31931 1m2a:B (1.5) BS01 FES ? N/A O66511 12089152
    31932 1m2b:A (1.25) BS01 FES ? N/A O66511 12089152
    31933 1m2b:B (1.25) BS01 FES ? N/A O66511 12089152
    31934 1m2d:A (1.05) BS01 FES ? N/A O66511 12089152
    31935 1m2d:B (1.05) BS01 FES ? N/A O66511 12089152
    31936 1m2g:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    31937 1m2g:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    31938 1m2h:A (1.8) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    31939 1m2h:A (1.8) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    31940 1m2i:A (1.8) BS01 HEM ? GO:0020037 ... P00171 N/A
    31941 1m2j:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    31942 1m2j:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    31943 1m2k:A (1.47) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    31944 1m2k:A (1.47) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    31945 1m2m:A (1.8) BS01 HEM ? GO:0020037 ... P00171 N/A
    31946 1m2n:A (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    31947 1m2n:A (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    31948 1m2n:B (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    31949 1m2n:B (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    31950 1m2o:A (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    31951 1m2o:A (2.5) BS02 GNP ? GO:0000139 ... P15303 12239560
    31952 1m2o:B (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    31953 1m2o:B (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    31954 1m2o:C (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    31955 1m2o:D (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    31956 1m2o:D (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    31957 1m2p:A (2.0) BS01 HNA 2.7.11.1 GO:0004672 ... P28523 12419810 BindingDB: Ki=780nM
    31958 1m2q:A (1.79) BS01 MNX 2.7.11.1 GO:0004672 ... P28523 12419810 BindingDB: Ki=800nM
    31959 1m2r:A (1.7) BS01 MNY 2.7.11.1 GO:0004672 ... P28523 12419810 BindingDB: Ki=350nM
    31960 1m2t:A (1.89) BS01 ADE 3.2.2.22 GO:0017148 ... P81446 12351890
    31961 1m2v:A (2.75) BS01 ZN ? GO:0000139 ... P15303 12239560
    31962 1m2v:B (2.75) BS01 ZN ? GO:0000139 ... P40482 12239560
    31963 1m2w:A (1.8) BS01 NAD 1.1.1.67 GO:0003824 ... O08355 12196534
    31964 1m2w:A (1.8) BS02 MTL 1.1.1.67 GO:0003824 ... O08355 12196534
    31965 1m2w:B (1.8) BS01 NAD 1.1.1.67 GO:0003824 ... O08355 12196534
    31966 1m2w:B (1.8) BS02 MTL 1.1.1.67 GO:0003824 ... O08355 12196534
    31967 1m2x:A (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31968 1m2x:A (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31969 1m2x:A (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31970 1m2x:A (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    31971 1m2x:B (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31972 1m2x:B (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31973 1m2x:B (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31974 1m2x:B (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    31975 1m2x:C (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31976 1m2x:C (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31977 1m2x:C (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31978 1m2x:C (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    31979 1m2x:D (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31980 1m2x:D (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31981 1m2x:D (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    31982 1m2x:D (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    31983 1m2z:A (2.5) BS01 peptide ? N/A P04150 12151000
    31984 1m2z:A (2.5) BS02 DEX ? N/A P04150 12151000 BindingDB: EC50=2.5nM, Ki=1.2nM, IC50=5nM, Kd=19nM
    31985 1m2z:D (2.5) BS01 peptide ? N/A P04150 12151000
    31986 1m2z:D (2.5) BS02 DEX ? N/A P04150 12151000 BindingDB: EC50=2.5nM, Ki=1.2nM, IC50=5nM, Kd=19nM
    31987 1m32:A (2.2) BS01 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31988 1m32:A (2.2) BS02 POA 2.6.1.37 GO:0019700 ... P96060 12403617
    31989 1m32:B (2.2) BS01 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31990 1m32:B (2.2) BS02 PO4 2.6.1.37 GO:0019700 ... P96060 12403617
    31991 1m32:B (2.2) BS03 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31992 1m32:C (2.2) BS01 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31993 1m32:C (2.2) BS02 POA 2.6.1.37 GO:0019700 ... P96060 12403617
    31994 1m32:C (2.2) BS03 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31995 1m32:D (2.2) BS01 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31996 1m32:D (2.2) BS02 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31997 1m32:E (2.2) BS01 PO4 2.6.1.37 GO:0019700 ... P96060 12403617
    31998 1m32:E (2.2) BS02 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    31999 1m32:E (2.2) BS03 PLP 2.6.1.37 GO:0019700 ... P96060 12403617
    32000 1m32:F (2.2) BS01 PLP 2.6.1.37 GO:0019700 ... P96060 12403617

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).