SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    321401 5a9u:A (1.6) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=0.08nM
    321402 5a9x:A (3.8) BS01 GDP 3.6.5.- GO:0000027 ... P0A3B2 26283392
    321403 5a9y:A (4.0) BS01 G4P 3.6.5.- GO:0000027 ... P0A3B2 26283392
    321404 5a9z:AC (4.7) BS01 rna ? GO:0000049 ... Q5SLP7 26283392
    321405 5a9z:AD (4.7) BS01 rna ? GO:0002181 ... P60405 26283392
    321406 5a9z:AD (4.7) BS02 rna ? GO:0002181 ... P60405 26283392
    321407 5a9z:AE (4.7) BS01 rna ? GO:0003735 ... Q5SHN8 26283392
    321408 5a9z:AF (4.7) BS01 rna ? GO:0003735 ... Q5SHN9 26283392
    321409 5a9z:AG (4.7) BS01 rna ? GO:0000049 ... Q5SHQ0 26283392
    321410 5a9z:AG (4.7) BS02 rna ? GO:0000049 ... Q5SHQ0 26283392
    321411 5a9z:AH (4.7) BS01 rna ? GO:0002181 ... P0DOY8 26283392
    321412 5a9z:AI (4.7) BS01 rna ? N/A Q8VVE3 26283392
    321413 5a9z:AJ (4.7) BS01 rna ? GO:0003735 ... Q5SLP6 26283392
    321414 5a9z:AK (4.7) BS01 rna ? GO:0003729 ... P60488 26283392
    321415 5a9z:AL (4.7) BS01 rna ? GO:0003735 ... Q5SHP8 26283392
    321416 5a9z:AL (4.7) BS02 rna ? GO:0003735 ... Q5SHP8 26283392
    321417 5a9z:AM (4.7) BS01 rna ? GO:0003735 ... Q5SHQ7 26283392
    321418 5a9z:AN (4.7) BS01 rna ? GO:0000049 ... P60489 26283392
    321419 5a9z:AO (4.7) BS01 rna ? GO:0003735 ... Q9Z9H5 26283392
    321420 5a9z:AP (4.7) BS01 rna ? GO:0003735 ... Q5SHQ4 26283392
    321421 5a9z:AP (4.7) BS02 rna ? GO:0003735 ... Q5SHQ4 26283392
    321422 5a9z:AQ (4.7) BS01 rna ? GO:0003735 ... P60490 26283392
    321423 5a9z:AQ (4.7) BS02 rna ? GO:0003735 ... P60490 26283392
    321424 5a9z:AR (4.7) BS01 rna ? GO:0000027 ... P60491 26283392
    321425 5a9z:AS (4.7) BS01 rna ? GO:0003723 ... P60492 26283392
    321426 5a9z:AT (4.7) BS01 rna ? GO:0003735 ... Q5SHP3 26283392
    321427 5a9z:AU (4.7) BS01 rna ? GO:0003735 ... Q5SHP0 26283392
    321428 5a9z:AV (4.7) BS01 rna ? GO:0003723 ... Q5SHP9 26283392
    321429 5a9z:AW (4.7) BS01 rna ? GO:0003735 ... Q5SHZ1 26283392
    321430 5a9z:AW (4.7) BS02 rna ? GO:0003735 ... Q5SHZ1 26283392
    321431 5a9z:AX (4.7) BS01 rna ? GO:0003735 ... P60493 26283392
    321432 5a9z:AX (4.7) BS02 rna ? GO:0003735 ... P60493 26283392
    321433 5a9z:AY (4.7) BS01 rna ? GO:0003735 ... Q5SHP6 26283392
    321434 5a9z:AZ (4.7) BS01 rna ? GO:0003735 ... Q5SHQ6 26283392
    321435 5a9z:Aa (4.7) BS01 rna ? GO:0003735 ... Q5SJE1 26283392
    321436 5a9z:Ab (4.7) BS01 rna ? GO:0003735 ... P80339 26283392
    321437 5a9z:Ac (4.7) BS01 rna ? GO:0000049 ... P35871 26283392
    321438 5a9z:Ad (4.7) BS01 rna ? GO:0003735 ... P80340 26283392
    321439 5a9z:Ae (4.7) BS01 rna ? GO:0003735 ... Q5SKU1 26283392
    321440 5a9z:Af (4.7) BS01 rna ? GO:0003735 ... Q5SHR2 26283392
    321441 5a9z:BF (4.7) BS01 rna ? GO:0003735 ... P80371 26283392
    321442 5a9z:BG (4.7) BS01 rna ? GO:0003676 ... P80372 26283392
    321443 5a9z:BH (4.7) BS01 rna ? GO:0003723 ... P80373 26283392
    321444 5a9z:BI (4.7) BS01 rna ? GO:0003723 ... Q5SHQ5 26283392
    321445 5a9z:BJ (4.7) BS01 rna ? GO:0003735 ... Q5SLP8 26283392
    321446 5a9z:BK (4.7) BS01 rna ? GO:0000049 ... P17291 26283392
    321447 5a9z:BL (4.7) BS01 rna ? GO:0003735 ... P0DOY9 26283392
    321448 5a9z:BM (4.7) BS01 rna ? GO:0000049 ... P80374 26283392
    321449 5a9z:BN (4.7) BS01 rna ? GO:0000049 ... Q5SHN7 26283392
    321450 5a9z:BO (4.7) BS01 rna ? GO:0003735 ... P80376 26283392
    321451 5a9z:BP (4.7) BS01 rna ? GO:0000049 ... Q5SHN3 26283392
    321452 5a9z:BQ (4.7) BS01 rna ? GO:0000049 ... P80377 26283392
    321453 5a9z:BQ (4.7) BS02 rna ? GO:0000049 ... P80377 26283392
    321454 5a9z:BR (4.7) BS01 rna ? GO:0003735 ... P0DOY6 26283392
    321455 5a9z:BS (4.7) BS01 rna ? GO:0003735 ... Q5SJ76 26283392
    321456 5a9z:BS (4.7) BS02 rna ? GO:0003735 ... Q5SJ76 26283392
    321457 5a9z:BT (4.7) BS01 rna ? GO:0003735 ... Q5SJH3 26283392
    321458 5a9z:BU (4.7) BS01 rna ? GO:0003735 ... P0DOY7 26283392
    321459 5a9z:BV (4.7) BS01 rna ? GO:0003735 ... Q5SLQ0 26283392
    321460 5a9z:BW (4.7) BS01 rna ? GO:0003723 ... Q5SHP2 26283392
    321461 5a9z:BX (4.7) BS01 rna ? GO:0003723 ... P80380 26283392
    321462 5a9z:CA (4.7) BS01 rna 3.6.5.- GO:0003924 ... P0A3B2 26283392
    321463 5a9z:CA (4.7) BS02 rna 3.6.5.- GO:0003924 ... P0A3B2 26283392
    321464 5aa0:AC (5.0) BS01 rna ? GO:0000049 ... Q5SLP7 26283392
    321465 5aa0:AC (5.0) BS02 rna ? GO:0000049 ... Q5SLP7 26283392
    321466 5aa0:AD (5.0) BS01 rna ? GO:0002181 ... P60405 26283392
    321467 5aa0:AE (5.0) BS01 rna ? GO:0003735 ... Q5SHN8 26283392
    321468 5aa0:AF (5.0) BS01 rna ? GO:0003735 ... Q5SHN9 26283392
    321469 5aa0:AG (5.0) BS01 rna ? GO:0000049 ... Q5SHQ0 26283392
    321470 5aa0:AG (5.0) BS02 rna ? GO:0000049 ... Q5SHQ0 26283392
    321471 5aa0:AG (5.0) BS03 rna ? GO:0000049 ... Q5SHQ0 26283392
    321472 5aa0:AH (5.0) BS01 rna ? GO:0002181 ... P0DOY8 26283392
    321473 5aa0:AI (5.0) BS01 rna ? N/A Q8VVE3 26283392
    321474 5aa0:AJ (5.0) BS01 rna ? GO:0003735 ... Q5SLP6 26283392
    321475 5aa0:AK (5.0) BS01 rna ? GO:0003729 ... P60488 26283392
    321476 5aa0:AL (5.0) BS01 rna ? GO:0003735 ... Q5SHP8 26283392
    321477 5aa0:AL (5.0) BS02 rna ? GO:0003735 ... Q5SHP8 26283392
    321478 5aa0:AM (5.0) BS01 rna ? GO:0003735 ... Q5SHQ7 26283392
    321479 5aa0:AN (5.0) BS01 rna ? GO:0000049 ... P60489 26283392
    321480 5aa0:AO (5.0) BS01 rna ? GO:0003735 ... Q9Z9H5 26283392
    321481 5aa0:AP (5.0) BS01 rna ? GO:0003735 ... Q5SHQ4 26283392
    321482 5aa0:AP (5.0) BS02 rna ? GO:0003735 ... Q5SHQ4 26283392
    321483 5aa0:AQ (5.0) BS01 rna ? GO:0003735 ... P60490 26283392
    321484 5aa0:AQ (5.0) BS02 rna ? GO:0003735 ... P60490 26283392
    321485 5aa0:AR (5.0) BS01 rna ? GO:0000027 ... P60491 26283392
    321486 5aa0:AS (5.0) BS01 rna ? GO:0003723 ... P60492 26283392
    321487 5aa0:AT (5.0) BS01 rna ? GO:0003735 ... Q5SHP3 26283392
    321488 5aa0:AU (5.0) BS01 rna ? GO:0003735 ... Q5SHP0 26283392
    321489 5aa0:AV (5.0) BS01 rna ? GO:0003723 ... Q5SHP9 26283392
    321490 5aa0:AW (5.0) BS01 rna ? GO:0003735 ... Q5SHZ1 26283392
    321491 5aa0:AW (5.0) BS02 rna ? GO:0003735 ... Q5SHZ1 26283392
    321492 5aa0:AW (5.0) BS03 rna ? GO:0003735 ... Q5SHZ1 26283392
    321493 5aa0:AX (5.0) BS01 rna ? GO:0003735 ... P60493 26283392
    321494 5aa0:AX (5.0) BS02 rna ? GO:0003735 ... P60493 26283392
    321495 5aa0:AX (5.0) BS03 rna ? GO:0003735 ... P60493 26283392
    321496 5aa0:AX (5.0) BS04 8AN ? GO:0003735 ... P60493 26283392
    321497 5aa0:AY (5.0) BS01 rna ? GO:0003735 ... Q5SHP6 26283392
    321498 5aa0:AZ (5.0) BS01 rna ? GO:0003735 ... Q5SHQ6 26283392
    321499 5aa0:Aa (5.0) BS01 rna ? GO:0003735 ... Q5SJE1 26283392
    321500 5aa0:Ab (5.0) BS01 rna ? GO:0003735 ... P80339 26283392
    321501 5aa0:Ac (5.0) BS01 rna ? GO:0000049 ... P35871 26283392
    321502 5aa0:Ad (5.0) BS01 rna ? GO:0003735 ... P80340 26283392
    321503 5aa0:Ae (5.0) BS01 rna ? GO:0003735 ... Q5SKU1 26283392
    321504 5aa0:Af (5.0) BS01 rna ? GO:0003735 ... Q5SHR2 26283392
    321505 5aa0:BF (5.0) BS01 rna ? GO:0003735 ... P80371 26283392
    321506 5aa0:BG (5.0) BS01 rna ? GO:0003676 ... P80372 26283392
    321507 5aa0:BH (5.0) BS01 rna ? GO:0003723 ... P80373 26283392
    321508 5aa0:BI (5.0) BS01 rna ? GO:0003723 ... Q5SHQ5 26283392
    321509 5aa0:BJ (5.0) BS01 rna ? GO:0003735 ... Q5SLP8 26283392
    321510 5aa0:BK (5.0) BS01 rna ? GO:0000049 ... P17291 26283392
    321511 5aa0:BL (5.0) BS01 rna ? GO:0003735 ... P0DOY9 26283392
    321512 5aa0:BM (5.0) BS01 rna ? GO:0000049 ... P80374 26283392
    321513 5aa0:BM (5.0) BS02 rna ? GO:0000049 ... P80374 26283392
    321514 5aa0:BN (5.0) BS01 rna ? GO:0000049 ... Q5SHN7 26283392
    321515 5aa0:BO (5.0) BS01 rna ? GO:0003735 ... P80376 26283392
    321516 5aa0:BP (5.0) BS01 rna ? GO:0000049 ... Q5SHN3 26283392
    321517 5aa0:BQ (5.0) BS01 rna ? GO:0000049 ... P80377 26283392
    321518 5aa0:BR (5.0) BS01 rna ? GO:0003735 ... P0DOY6 26283392
    321519 5aa0:BS (5.0) BS01 rna ? GO:0003735 ... Q5SJ76 26283392
    321520 5aa0:BS (5.0) BS02 rna ? GO:0003735 ... Q5SJ76 26283392
    321521 5aa0:BT (5.0) BS01 rna ? GO:0003735 ... Q5SJH3 26283392
    321522 5aa0:BU (5.0) BS01 rna ? GO:0003735 ... P0DOY7 26283392
    321523 5aa0:BV (5.0) BS01 rna ? GO:0003735 ... Q5SLQ0 26283392
    321524 5aa0:BW (5.0) BS01 rna ? GO:0003723 ... Q5SHP2 26283392
    321525 5aa0:BX (5.0) BS01 rna ? GO:0003723 ... P80380 26283392
    321526 5aa0:BZ (5.0) BS01 rna 3.6.5.- GO:0003924 ... P0A3B2 26283392
    321527 5aa0:BZ (5.0) BS02 rna 3.6.5.- GO:0003924 ... P0A3B2 26283392
    321528 5aa1:A (2.89) BS01 peptide 4.2.2.n1 GO:0000270 ... Q9HXN1 27618662
    321529 5aa2:A (2.8) BS01 peptide 4.2.2.n1 GO:0000270 ... Q9HXN1 27618662
    321530 5aa3:A (3.2) BS01 GLU 4.2.2.n1 GO:0000270 ... Q9HXN1 27618662
    321531 5aa4:A (2.4) BS01 6X4 4.2.2.n1 GO:0000270 ... A0A1I9GEN8 27618662
    321532 5aa5:A (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321533 5aa5:A (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321534 5aa5:A (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321535 5aa5:B (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321536 5aa5:B (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321537 5aa5:B (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321538 5aa5:C (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321539 5aa5:D (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321540 5aa5:D (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321541 5aa5:D (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321542 5aa5:E (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321543 5aa5:F (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321544 5aa5:F (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321545 5aa5:F (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321546 5aa5:G (2.497) BS01 SF4 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321547 5aa5:G (2.497) BS02 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321548 5aa5:H (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321549 5aa5:H (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321550 5aa5:H (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321551 5aa5:I (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321552 5aa5:I (2.497) BS02 SF4 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321553 5aa5:K (2.497) BS01 SF4 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321554 5aa5:K (2.497) BS02 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321555 5aa5:L (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    321556 5aa5:M (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321557 5aa5:M (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321558 5aa5:M (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    321559 5aa6:A (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    321560 5aa6:B (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    321561 5aa6:C (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    321562 5aa6:D (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    321563 5aa6:E (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    321564 5aa6:F (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    321565 5aa7:A (1.55) BS01 CU1 3.2.1.14 N/A C7R4I0 26763108
    321566 5aa7:B (1.55) BS01 CU1 3.2.1.14 N/A C7R4I0 26763108
    321567 5aa8:A (1.86) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=8.6nM
    321568 5aa9:A (1.93) BS01 5P8 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=6.4nM
    321569 5aaa:A (1.73) BS01 VGH 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=0.38nM
    BindingDB: IC50=20nM, Ki=8.2nM, EC50=22840nM, Kd=3.3nM
    321570 5aab:A (2.2) BS01 VGH 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=0.88nM
    BindingDB: IC50=20nM, Ki=8.2nM, EC50=22840nM, Kd=3.3nM
    321571 5aac:A (1.7) BS01 VGH 2.7.10.1 GO:0004672 ... Q9UM73 26698910 MOAD: Ki=1.3nM
    BindingDB: IC50=20nM, Ki=8.2nM, EC50=22840nM, Kd=3.3nM
    321572 5aad:A (3.1) BS01 5GX 2.7.11.1 GO:0000212 ... O14965 26296477
    321573 5aae:A (3.11) BS01 7HD 2.7.11.1 GO:0000212 ... O14965 26296477
    321574 5aaf:A (2.78) BS01 NL4 2.7.11.1 GO:0000212 ... O14965 26296477
    321575 5aag:A (2.85) BS01 6F2 2.7.11.1 GO:0000212 ... O14965 26296477
    321576 5aal:A (2.45) BS01 8L8 ? GO:0007155 ... Q1R2J4 27158502
    321577 5aal:B (2.45) BS01 8L8 ? GO:0007155 ... Q1R2J4 27158502
    321578 5aan:A (1.6) BS01 CA ? GO:0005509 ... Q9VWX8 28119500
    321579 5aan:A (1.6) BS02 CA ? GO:0005509 ... Q9VWX8 28119500
    321580 5aan:A (1.6) BS03 CA ? GO:0005509 ... Q9VWX8 28119500
    321581 5aan:A (1.6) BS04 XOC ? GO:0005509 ... Q9VWX8 28119500 MOAD: Kd=71uM
    BindingDB: Kd=71000nM
    321582 5aao:A (2.6) BS01 6FE N/A N/A N/A 26812208
    321583 5aao:B (2.6) BS01 6FE N/A N/A N/A 26812208
    321584 5aao:C (2.6) BS01 6FE N/A N/A N/A 26812208
    321585 5aao:D (2.6) BS01 6FE N/A N/A N/A 26812208
    321586 5aao:E (2.6) BS01 6FE N/A N/A N/A 26812208
    321587 5aao:F (2.6) BS01 6FE N/A N/A N/A 26812208
    321588 5aao:G (2.6) BS01 6FE N/A N/A N/A 26812208
    321589 5aao:H (2.6) BS01 6FE N/A N/A N/A 26812208
    321590 5aao:I (2.6) BS01 6FE N/A N/A N/A 26812208
    321591 5aao:J (2.6) BS01 6FE N/A N/A N/A 26812208
    321592 5aao:K (2.6) BS01 6FE N/A N/A N/A 26812208
    321593 5aao:L (2.6) BS01 6FE N/A N/A N/A 26812208
    321594 5aap:A (1.302) BS01 VNY ? GO:0007155 ... Q1R2J4 27158502
    321595 5aaq:A (-1.00) BS01 ZN ? N/A Q13137 27370208
    321596 5aas:A (-1.00) BS01 ZN ? N/A Q86VP1 26451915
    321597 5aas:A (-1.00) BS02 ZN ? N/A Q86VP1 26451915
    321598 5aau:A (1.9) BS01 XBR ? N/A P03372 26407012 MOAD: ic50=13.8uM
    BindingDB: IC50=3715nM
    321599 5aau:B (1.9) BS01 XBR ? N/A P03372 26407012 MOAD: ic50=13.8uM
    BindingDB: IC50=3715nM
    321600 5aav:A (1.95) BS01 GW5 ? N/A P03372 26407012 MOAD: ic50=3.24nM
    BindingDB: EC50=390nM, IC50=>1270nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).