SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1615 1616 1617 1618 1619 1620 1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634 1635 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    324801 5b2p:A (1.7) BS01 rna 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324802 5b2p:A (1.7) BS02 dna 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324803 5b2p:A (1.7) BS03 dna 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324804 5b2p:A (1.7) BS04 ZN 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324805 5b2p:A (1.7) BS05 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324806 5b2p:A (1.7) BS06 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324807 5b2p:A (1.7) BS07 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324808 5b2q:A (1.7) BS01 rna 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324809 5b2q:A (1.7) BS02 dna 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324810 5b2q:A (1.7) BS03 dna 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324811 5b2q:A (1.7) BS04 ZN 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324812 5b2q:A (1.7) BS05 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324813 5b2q:A (1.7) BS06 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324814 5b2q:A (1.7) BS07 CA 3.1.-.- GO:0003677 ... A0Q5Y3 26875867
    324815 5b2r:B (2.0) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324816 5b2r:B (2.0) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324817 5b2r:B (2.0) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324818 5b2s:B (2.2) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324819 5b2s:B (2.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324820 5b2s:B (2.2) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324821 5b2t:B (2.2) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324822 5b2t:B (2.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324823 5b2t:B (2.2) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 26990991
    324824 5b2u:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324825 5b2u:A (1.9) BS02 W06 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324826 5b2u:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324827 5b2u:B (1.9) BS02 W06 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324828 5b2v:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324829 5b2v:A (2.3) BS02 W06 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324830 5b2v:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324831 5b2v:B (2.3) BS02 W06 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324832 5b2w:A (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324833 5b2w:A (1.65) BS02 W1Z 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324834 5b2w:B (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324835 5b2w:B (1.65) BS02 W1Z 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324836 5b2x:A (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324837 5b2x:A (1.9) BS02 W0T 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324838 5b2x:B (1.9) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324839 5b2y:A (2.01) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324840 5b2y:A (2.01) BS02 W10 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324841 5b2y:B (2.01) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324842 5b2y:B (2.01) BS02 W10 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    324843 5b2z:A (1.56) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 27180801
    324844 5b2z:A (1.56) BS02 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    324845 5b2z:A (1.56) BS03 MG 3.6.5.2 GO:0003924 ... P01112 27180801
    324846 5b2z:A (1.56) BS04 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    324847 5b30:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 27180801
    324848 5b30:A (1.6) BS02 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    324849 5b31:A (2.2) BS01 dna ? GO:0000786 ... P68431 27358293
    324850 5b31:A (2.2) BS02 dna ? GO:0000786 ... P68431 27358293
    324851 5b31:A (2.2) BS03 MN ? GO:0000786 ... P68431 27358293
    324852 5b31:B (2.2) BS01 dna ? GO:0000781 ... P62805 27358293
    324853 5b31:B (2.2) BS02 dna ? GO:0000781 ... P62805 27358293
    324854 5b31:C (2.2) BS01 dna ? GO:0000786 ... P04908 27358293
    324855 5b31:C (2.2) BS02 dna ? GO:0000786 ... P04908 27358293
    324856 5b31:D (2.2) BS01 dna ? GO:0000786 ... P06899 27358293
    324857 5b31:D (2.2) BS02 dna ? GO:0000786 ... P06899 27358293
    324858 5b31:E (2.2) BS01 dna ? GO:0000786 ... P68431 27358293
    324859 5b31:E (2.2) BS02 dna ? GO:0000786 ... P68431 27358293
    324860 5b31:F (2.2) BS01 dna ? GO:0000781 ... P62805 27358293
    324861 5b31:F (2.2) BS02 dna ? GO:0000781 ... P62805 27358293
    324862 5b31:G (2.2) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    324863 5b31:G (2.2) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    324864 5b31:H (2.2) BS01 dna ? GO:0000786 ... P06899 27358293
    324865 5b31:H (2.2) BS02 dna ? GO:0000786 ... P06899 27358293
    324866 5b32:A (2.35) BS01 dna ? GO:0000775 ... P84243 27358293
    324867 5b32:A (2.35) BS02 dna ? GO:0000775 ... P84243 27358293
    324868 5b32:B (2.35) BS01 dna ? GO:0000781 ... P62805 27358293
    324869 5b32:B (2.35) BS02 dna ? GO:0000781 ... P62805 27358293
    324870 5b32:C (2.35) BS01 dna ? GO:0000786 ... P04908 27358293
    324871 5b32:C (2.35) BS02 dna ? GO:0000786 ... P04908 27358293
    324872 5b32:D (2.35) BS01 dna ? GO:0000786 ... P06899 27358293
    324873 5b32:D (2.35) BS02 dna ? GO:0000786 ... P06899 27358293
    324874 5b32:E (2.35) BS01 dna ? GO:0000775 ... P84243 27358293
    324875 5b32:E (2.35) BS02 dna ? GO:0000775 ... P84243 27358293
    324876 5b32:F (2.35) BS01 dna ? GO:0000781 ... P62805 27358293
    324877 5b32:F (2.35) BS02 dna ? GO:0000781 ... P62805 27358293
    324878 5b32:G (2.35) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    324879 5b32:G (2.35) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    324880 5b32:H (2.35) BS01 dna ? GO:0000786 ... P06899 27358293
    324881 5b32:H (2.35) BS02 dna ? GO:0000786 ... P06899 27358293
    324882 5b33:A (2.925) BS01 dna ? GO:0000775 ... P84243 27358293
    324883 5b33:A (2.925) BS02 dna ? GO:0000775 ... P84243 27358293
    324884 5b33:B (2.925) BS01 dna ? GO:0000781 ... P62805 27358293
    324885 5b33:B (2.925) BS02 dna ? GO:0000781 ... P62805 27358293
    324886 5b33:C (2.925) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    324887 5b33:C (2.925) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    324888 5b33:D (2.925) BS01 dna ? GO:0000786 ... P06899 27358293
    324889 5b33:D (2.925) BS02 dna ? GO:0000786 ... P06899 27358293
    324890 5b33:E (2.925) BS01 dna ? GO:0000775 ... P84243 27358293
    324891 5b33:E (2.925) BS02 dna ? GO:0000775 ... P84243 27358293
    324892 5b33:F (2.925) BS01 dna ? GO:0000781 ... P62805 27358293
    324893 5b33:F (2.925) BS02 dna ? GO:0000781 ... P62805 27358293
    324894 5b33:G (2.925) BS01 dna ? GO:0000786 ... P0C0S5 27358293
    324895 5b33:G (2.925) BS02 dna ? GO:0000786 ... P0C0S5 27358293
    324896 5b33:H (2.925) BS01 dna ? GO:0000786 ... P06899 27358293
    324897 5b33:H (2.925) BS02 dna ? GO:0000786 ... P06899 27358293
    324898 5b34:A (2.1) BS01 RET ? GO:0005216 ... P02945 27799539
    324899 5b34:A (2.1) BS02 4QL ? GO:0005216 ... P02945 27799539
    324900 5b35:A (2.35) BS01 RET ? GO:0005216 ... B0R5N9 27799539
    324901 5b36:A (2.15) BS01 PLP 2.5.1.47
    2.5.1.65
    4.2.1.22
    GO:0004122 ... Q9YBL2 27377295
    324902 5b36:A (2.15) BS02 CYS 2.5.1.47
    2.5.1.65
    4.2.1.22
    GO:0004122 ... Q9YBL2 27377295
    324903 5b36:B (2.15) BS01 PLP 2.5.1.47
    2.5.1.65
    4.2.1.22
    GO:0004122 ... Q9YBL2 27377295
    324904 5b36:B (2.15) BS02 CYS 2.5.1.47
    2.5.1.65
    4.2.1.22
    GO:0004122 ... Q9YBL2 27377295
    324905 5b38:A (2.3) BS01 peptide ? N/A P01889 27045007
    324906 5b39:A (2.5) BS01 peptide ? N/A P01889 27045007
    324907 5b3a:A (2.14) BS01 0JO 2.5.1.47
    2.5.1.65
    4.2.1.22
    GO:0004122 ... Q9YBL2 27377295
    324908 5b3a:B (2.14) BS01 0JO 2.5.1.47
    2.5.1.65
    4.2.1.22
    GO:0004122 ... Q9YBL2 27377295
    324909 5b3h:C (2.7) BS01 ZN ? N/A Q700D2 28211915
    324910 5b3h:C (2.7) BS02 ZN ? N/A Q700D2 28211915
    324911 5b3h:F (2.7) BS01 ZN ? N/A Q700D2 28211915
    324912 5b3h:F (2.7) BS02 ZN ? N/A Q700D2 28211915
    324913 5b3i:A (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    324914 5b3i:B (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    324915 5b3i:C (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    324916 5b3i:D (1.89) BS01 HEC ? GO:0005506 ... F7J213 28097774
    324917 5b3p:A (1.652) BS01 CA 7.1.1.- GO:0008137 ... Q56219 27398308
    324918 5b3r:A (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    324919 5b3r:A (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    324920 5b3r:B (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    324921 5b3r:B (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... Q5U807 27381398
    324922 5b3s:A (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    324923 5b3s:A (1.68) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    324924 5b3s:A (1.68) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    324925 5b3s:A (1.68) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    324926 5b3s:B (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 N/A
    324927 5b3s:B (1.68) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 N/A
    324928 5b3s:C (1.68) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    324929 5b3s:C (1.68) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    324930 5b3s:C (1.68) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    324931 5b3s:F (1.68) BS01 ZN ? GO:0005740 ... P00428 N/A
    324932 5b3s:G (1.68) BS01 DMU ? GO:0005743 ... P07471 N/A
    324933 5b3s:J (1.68) BS01 DMU ? GO:0006123 ... P07470 N/A
    324934 5b3s:J (1.68) BS02 DMU ? GO:0006123 ... P07470 N/A
    324935 5b3s:K (1.68) BS01 DMU ? GO:0006123 ... P13183 N/A
    324936 5b3s:K (1.68) BS02 DMU ? GO:0006123 ... P13183 N/A
    324937 5b3s:K (1.68) BS03 DMU ? GO:0006123 ... P13183 N/A
    324938 5b3s:L (1.68) BS01 DMU ? GO:0006123 ... P00430 N/A
    324939 5b3s:L (1.68) BS02 DMU ? GO:0006123 ... P00430 N/A
    324940 5b3s:M (1.68) BS01 DMU ? GO:0006123 ... P10175 N/A
    324941 5b3s:N (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    324942 5b3s:N (1.68) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    324943 5b3s:N (1.68) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    324944 5b3s:N (1.68) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    324945 5b3s:N (1.68) BS05 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    324946 5b3s:O (1.68) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 N/A
    324947 5b3s:O (1.68) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 N/A
    324948 5b3s:O (1.68) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    324949 5b3s:P (1.68) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    324950 5b3s:P (1.68) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    324951 5b3s:P (1.68) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    324952 5b3s:S (1.68) BS01 ZN ? GO:0005740 ... P00428 N/A
    324953 5b3s:W (1.68) BS01 DMU ? GO:0006123 ... P07470 N/A
    324954 5b3s:W (1.68) BS02 DMU ? GO:0006123 ... P07470 N/A
    324955 5b3s:X (1.68) BS01 DMU ? GO:0006123 ... P13183 N/A
    324956 5b3s:X (1.68) BS02 DMU ? GO:0006123 ... P13183 N/A
    324957 5b3s:Z (1.68) BS01 DMU ? GO:0006123 ... P10175 N/A
    324958 5b3u:B (2.698) BS01 NAP ? GO:0000166 ... P72782 28169272
    324959 5b3v:A (2.594) BS01 NAP ? GO:0000166 ... P72782 28169272
    324960 5b3v:A (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    324961 5b3v:A (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    324962 5b3v:B (2.594) BS01 NAP ? GO:0000166 ... P72782 28169272
    324963 5b3v:B (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    324964 5b3v:B (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    324965 5b3v:C (2.594) BS01 NAP ? GO:0000166 ... P72782 28169272
    324966 5b3v:C (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    324967 5b3v:C (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    324968 5b3v:D (2.594) BS01 NAP ? GO:0000166 ... P72782 28169272
    324969 5b3v:D (2.594) BS02 BLA ? GO:0000166 ... P72782 28169272
    324970 5b3v:D (2.594) BS03 BLA ? GO:0000166 ... P72782 28169272
    324971 5b3w:A (2.4) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324972 5b3w:A (2.4) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324973 5b3w:B (2.4) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324974 5b3w:B (2.4) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324975 5b3x:A (2.4) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324976 5b3x:A (2.4) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324977 5b3y:A (1.901) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324978 5b3y:A (1.901) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324979 5b3z:A (2.3) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324980 5b3z:A (2.3) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324981 5b3z:B (2.3) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324982 5b3z:B (2.3) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324983 5b3z:C (2.3) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324984 5b3z:C (2.3) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324985 5b3z:D (2.3) BS01 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324986 5b3z:D (2.3) BS02 GLC ?
    5.2.1.8
    GO:0005515 ... P0AEX9
    Q13526
    27698466
    324987 5b40:A (3.33) BS01 dna ? GO:0000786 ... Q71DI3 N/A
    324988 5b40:A (3.33) BS02 dna ? GO:0000786 ... Q71DI3 N/A
    324989 5b40:B (3.33) BS01 dna ? GO:0000781 ... P62805 N/A
    324990 5b40:B (3.33) BS02 dna ? GO:0000781 ... P62805 N/A
    324991 5b40:C (3.33) BS01 dna ? GO:0000786 ... P04908 N/A
    324992 5b40:C (3.33) BS02 dna ? GO:0000786 ... P04908 N/A
    324993 5b40:D (3.33) BS01 dna ? GO:0000786 ... P06899 N/A
    324994 5b40:D (3.33) BS02 dna ? GO:0000786 ... P06899 N/A
    324995 5b40:E (3.33) BS01 dna ? GO:0000786 ... Q71DI3 N/A
    324996 5b40:E (3.33) BS02 dna ? GO:0000786 ... Q71DI3 N/A
    324997 5b40:F (3.33) BS01 dna ? GO:0000781 ... P62805 N/A
    324998 5b40:F (3.33) BS02 dna ? GO:0000781 ... P62805 N/A
    324999 5b40:G (3.33) BS01 dna ? GO:0000786 ... P04908 N/A
    325000 5b40:G (3.33) BS02 dna ? GO:0000786 ... P04908 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).