SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    325001 5b40:H (3.33) BS01 dna ? GO:0000786 ... P06899 N/A
    325002 5b40:H (3.33) BS02 dna ? GO:0000786 ... P06899 N/A
    325003 5b41:A (1.89) BS01 peptide ? GO:0003677 ... P13053 27535484
    325004 5b41:A (1.89) BS02 YSV ? GO:0003677 ... P13053 27535484 BindingDB: Ki=0.030000nM
    325005 5b43:A (2.8) BS01 rna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 27114038
    325006 5b43:A (2.8) BS02 dna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 27114038
    325007 5b43:A (2.8) BS03 dna 3.1.21.1
    4.6.1.22
    GO:0003677 ... U2UMQ6 27114038
    325008 5b46:A (2.1) BS01 TPP 1.2.7.11 GO:0006086 ... Q96XT2 27619895
    325009 5b46:B (2.1) BS01 SF4 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    325010 5b46:B (2.1) BS02 TPP 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    325011 5b46:B (2.1) BS03 MG 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    325012 5b47:A (2.2) BS01 PYR 1.2.7.11 GO:0006086 ... Q96XT2 27619895
    325013 5b47:A (2.2) BS02 TPP 1.2.7.11 GO:0006086 ... Q96XT2 27619895
    325014 5b47:B (2.2) BS01 SF4 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    325015 5b47:B (2.2) BS02 TPP 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    325016 5b47:B (2.2) BS03 MG 1.2.7.11 GO:0000287 ... Q96XT4 27619895
    325017 5b48:A (2.5) BS01 TDN 1.2.7.11 GO:0006086 ... Q96Y66 27619895
    325018 5b48:B (2.5) BS01 SF4 1.2.7.11 GO:0000287 ... Q96Y68 27619895
    325019 5b48:B (2.5) BS02 TDN 1.2.7.11 GO:0000287 ... Q96Y68 27619895
    325020 5b48:B (2.5) BS03 MG 1.2.7.11 GO:0000287 ... Q96Y68 27619895
    325021 5b49:A (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325022 5b49:A (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325023 5b49:A (1.65) BS03 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325024 5b49:B (1.65) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325025 5b49:B (1.65) BS02 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325026 5b49:B (1.65) BS03 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325027 5b4a:A (1.72) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325028 5b4a:B (1.72) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325029 5b4b:A (1.6) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325030 5b4b:B (1.6) BS01 LP5 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325031 5b4c:A (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325032 5b4c:B (1.96) BS01 MN 3.6.1.54 GO:0005737 ... Q9I2V0 27609419
    325033 5b4e:A (2.698) BS01 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325034 5b4e:A (2.698) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325035 5b4e:A (2.698) BS03 ANP 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325036 5b4e:A (2.698) BS04 SF4 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325037 5b4f:A (2.75) BS01 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325038 5b4f:A (2.75) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325039 5b4f:A (2.75) BS03 SF4 2.8.1.15 GO:0000049 ... Q72LF3 28439027
    325040 5b4h:A (1.11) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 27596987
    325041 5b4i:A (1.11) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 27596987
    325042 5b4j:A (1.05) BS01 BLA 1.3.7.5 GO:0010024 ... Q55891 27596987
    325043 5b4k:A (2.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    325044 5b4k:A (2.9) BS02 6DT 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    325045 5b4k:B (2.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    325046 5b4k:B (2.9) BS02 6DT 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    325047 5b4l:A (2.4) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    325048 5b4l:A (2.4) BS02 6DW 3.1.4.17 GO:0004114 ... Q9Y233 27301679 MOAD: ic50=0.76nM
    BindingDB: IC50=0.760000nM
    325049 5b4l:B (2.4) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27301679
    325050 5b4l:B (2.4) BS02 6DW 3.1.4.17 GO:0004114 ... Q9Y233 27301679 MOAD: ic50=0.76nM
    BindingDB: IC50=0.760000nM
    325051 5b4o:A (1.37) BS01 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325052 5b4o:A (1.37) BS02 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325053 5b4o:B (1.37) BS01 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325054 5b4o:B (1.37) BS02 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325055 5b4o:B (1.37) BS03 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325056 5b4o:C (1.37) BS01 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325057 5b4o:C (1.37) BS02 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325058 5b4o:C (1.37) BS03 6DQ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 21168764
    325059 5b4t:A (1.19) BS01 NAD 1.1.1.30 GO:0000166 ... D0VWQ0 27380367
    325060 5b4t:A (1.19) BS02 3HR 1.1.1.30 GO:0000166 ... D0VWQ0 27380367
    325061 5b4u:A (1.45) BS01 NAD 1.1.1.30 GO:0000166 ... D0VWQ0 27380367
    325062 5b4v:A (1.5) BS01 NAD 1.1.1.30 GO:0000166 ... D0VWQ0 27380367
    325063 5b4v:A (1.5) BS02 DXX 1.1.1.30 GO:0000166 ... D0VWQ0 27380367
    325064 5b4w:A (2.6) BS01 peptide ? N/A O43157 27984026
    325065 5b4w:A (2.6) BS02 peptide ? N/A O43157 27984026
    325066 5b4w:B (2.6) BS01 peptide ? N/A O43157 27984026
    325067 5b4w:B (2.6) BS02 peptide ? N/A O43157 27984026
    325068 5b4w:C (2.6) BS01 peptide ? N/A O43157 27984026
    325069 5b4w:C (2.6) BS02 peptide ? N/A O43157 27984026
    325070 5b4w:D (2.6) BS01 peptide ? N/A O43157 27984026
    325071 5b4w:D (2.6) BS02 peptide ? N/A O43157 27984026
    325072 5b4w:E (2.6) BS01 peptide ? N/A O43157 27984026
    325073 5b4w:E (2.6) BS02 peptide ? N/A O43157 27984026
    325074 5b4w:F (2.6) BS01 peptide ? N/A O43157 27984026
    325075 5b4w:F (2.6) BS02 peptide ? N/A O43157 27984026
    325076 5b4x:A (3.2) BS01 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325077 5b4x:A (3.2) BS02 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325078 5b4x:A (3.2) BS03 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325079 5b4x:A (3.2) BS04 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325080 5b4x:B (3.2) BS01 CA ? GO:0005509 ... Q14114 N/A
    325081 5b4x:B (3.2) BS02 CA ? GO:0005509 ... Q14114 N/A
    325082 5b4x:B (3.2) BS03 CA ? GO:0005509 ... Q14114 N/A
    325083 5b4x:B (3.2) BS04 CA ? GO:0005509 ... Q14114 N/A
    325084 5b4x:C (3.2) BS01 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325085 5b4x:C (3.2) BS02 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325086 5b4x:C (3.2) BS03 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325087 5b4x:C (3.2) BS04 CA 3.4.21.- GO:0001764 ... Q60841 N/A
    325088 5b4x:D (3.2) BS01 CA ? GO:0005509 ... Q14114 N/A
    325089 5b4x:D (3.2) BS02 CA ? GO:0005509 ... Q14114 N/A
    325090 5b4x:D (3.2) BS03 CA ? GO:0005509 ... Q14114 N/A
    325091 5b4x:D (3.2) BS04 CA ? GO:0005509 ... Q14114 N/A
    325092 5b4y:B (1.9) BS01 CA ? N/A Q14114 N/A
    325093 5b4y:B (1.9) BS02 CA ? N/A Q14114 N/A
    325094 5b4z:A (1.3) BS01 HEM ? N/A Q8NTB8 27240352
    325095 5b50:A (1.65) BS01 HEM ? N/A Q8NTB8 27240352
    325096 5b51:A (1.3) BS01 HEM ? N/A Q8NTB8 27240352
    325097 5b53:A (2.91) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 N/A
    325098 5b55:A (2.14) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    325099 5b55:A (2.14) BS02 0JO 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    325100 5b55:B (2.14) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    325101 5b55:B (2.14) BS02 0JO 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    325102 5b56:A (2.3) BS01 peptide ? GO:0005737 ... P52293 27181198
    325103 5b56:A (2.3) BS02 peptide ? GO:0005737 ... P52293 27181198
    325104 5b56:B (2.3) BS01 peptide ? GO:0005737 ... P52293 27181198
    325105 5b56:B (2.3) BS02 peptide ? GO:0005737 ... P52293 27181198
    325106 5b57:A (2.8) BS01 DMU ? GO:0005886 ... B4EKB4 27830695
    325107 5b57:B (2.8) BS01 DMU ? GO:0005886 ... B4EKB4 27830695
    325108 5b59:A (2.0) BS01 KTO 3.2.1.17 GO:0003796 ... P00698 27534812
    325109 5b5b:A (2.0) BS01 peptide ? GO:0003677 ... P13053 27294600
    325110 5b5b:A (2.0) BS02 AKX ? GO:0003677 ... P13053 27294600 MOAD: ic50=0.43nM
    325111 5b5b:D (2.0) BS01 peptide ? GO:0003677 ... P13053 27294600
    325112 5b5b:D (2.0) BS02 AKX ? GO:0003677 ... P13053 27294600 MOAD: ic50=0.43nM
    325113 5b5e:A (1.87) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    325114 5b5e:A (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    325115 5b5e:A (1.87) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325116 5b5e:A (1.87) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325117 5b5e:A (1.87) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    325118 5b5e:A (1.87) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325119 5b5e:A (1.87) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    325120 5b5e:A (1.87) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325121 5b5e:A (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325122 5b5e:A (1.87) BS10 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    325123 5b5e:B (1.87) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    325124 5b5e:B (1.87) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    325125 5b5e:B (1.87) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    325126 5b5e:B (1.87) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    325127 5b5e:B (1.87) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    325128 5b5e:B (1.87) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    325129 5b5e:B (1.87) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    325130 5b5e:B (1.87) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    325131 5b5e:B (1.87) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    325132 5b5e:B (1.87) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    325133 5b5e:B (1.87) BS11 CLA ? GO:0009521 ... D0VWR1 28102667
    325134 5b5e:B (1.87) BS12 CLA ? GO:0009521 ... D0VWR1 28102667
    325135 5b5e:B (1.87) BS13 CLA ? GO:0009521 ... D0VWR1 28102667
    325136 5b5e:B (1.87) BS14 CLA ? GO:0009521 ... D0VWR1 28102667
    325137 5b5e:B (1.87) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    325138 5b5e:B (1.87) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    325139 5b5e:C (1.87) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    325140 5b5e:C (1.87) BS02 CLA ? GO:0005737 ... D0VWR7 28102667
    325141 5b5e:C (1.87) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    325142 5b5e:C (1.87) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    325143 5b5e:C (1.87) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    325144 5b5e:C (1.87) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    325145 5b5e:C (1.87) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    325146 5b5e:C (1.87) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    325147 5b5e:C (1.87) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    325148 5b5e:C (1.87) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    325149 5b5e:C (1.87) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    325150 5b5e:C (1.87) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    325151 5b5e:C (1.87) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    325152 5b5e:C (1.87) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    325153 5b5e:D (1.87) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325154 5b5e:D (1.87) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325155 5b5e:D (1.87) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325156 5b5e:D (1.87) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325157 5b5e:D (1.87) BS05 BCT 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325158 5b5e:D (1.87) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325159 5b5e:D (1.87) BS07 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325160 5b5e:D (1.87) BS08 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325161 5b5e:D (1.87) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325162 5b5e:D (1.87) BS10 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28102667
    325163 5b5e:E (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    325164 5b5e:F (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    325165 5b5e:H (1.87) BS01 CLA ? GO:0009523 ... P19052 28102667
    325166 5b5e:H (1.87) BS02 CLA ? GO:0009523 ... P19052 28102667
    325167 5b5e:H (1.87) BS03 CLA ? GO:0009523 ... P19052 28102667
    325168 5b5e:H (1.87) BS04 RRX ? GO:0009523 ... P19052 28102667
    325169 5b5e:I (1.87) BS01 CLA ? GO:0005737 ... P12240 28102667
    325170 5b5e:J (1.87) BS01 peptide ? GO:0009523 ... Q7DGD4 28102667
    325171 5b5e:J (1.87) BS02 MG ? GO:0009523 ... Q7DGD4 28102667
    325172 5b5e:K (1.87) BS01 peptide ? GO:0005737 ... P19054 28102667
    325173 5b5e:K (1.87) BS02 CLA ? GO:0005737 ... P19054 28102667
    325174 5b5e:K (1.87) BS03 CLA ? GO:0005737 ... P19054 28102667
    325175 5b5e:O (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    325176 5b5e:V (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    325177 5b5e:X (1.87) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    325178 5b5e:X (1.87) BS02 RRX ? GO:0009523 ... D0VWR4 28102667
    325179 5b5e:Z (1.87) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    325180 5b5e:a (1.87) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    325181 5b5e:a (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    325182 5b5e:a (1.87) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325183 5b5e:a (1.87) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325184 5b5e:a (1.87) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    325185 5b5e:a (1.87) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    325186 5b5e:a (1.87) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325187 5b5e:a (1.87) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    325188 5b5e:a (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325189 5b5e:a (1.87) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    325190 5b5e:b (1.87) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    325191 5b5e:b (1.87) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    325192 5b5e:b (1.87) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    325193 5b5e:b (1.87) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    325194 5b5e:b (1.87) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    325195 5b5e:b (1.87) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    325196 5b5e:b (1.87) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    325197 5b5e:b (1.87) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    325198 5b5e:b (1.87) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    325199 5b5e:b (1.87) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    325200 5b5e:b (1.87) BS11 CLA ? GO:0009521 ... D0VWR1 28102667

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).