SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    326201 5b8i:A (1.85) BS03 FK5 3.1.3.16 GO:0016787 ... J3K8M7 31537789
    326202 5b8i:B (1.85) BS01 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    326203 5b8i:B (1.85) BS02 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    326204 5b8i:B (1.85) BS03 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    326205 5b8i:B (1.85) BS04 CA ? GO:0005509 ... A0A0D8JSK0 31537789
    326206 5b8i:B (1.85) BS05 FK5 ? GO:0005509 ... A0A0D8JSK0 31537789
    326207 5b8i:C (1.85) BS01 FK5 5.2.1.8 GO:0003755 ... J3K5Z5 31537789
    326208 5bca:A (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    326209 5bca:B (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    326210 5bca:C (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    326211 5bca:D (2.2) BS01 CA 3.2.1.2 GO:0000272 ... P36924 10348915
    326212 5bir:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=255uM
    326213 5bir:B (2.0) BS01 CA 4.6.1.24 GO:0001411 ... P00651 9466938
    326214 5bir:B (2.0) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=255uM
    326215 5bj3:A (2.2) BS01 PLP 2.6.1.1
    2.6.1.78
    GO:0003824 ... Q56232 11432784
    326216 5bj3:B (2.2) BS01 PLP 2.6.1.1
    2.6.1.78
    GO:0003824 ... Q56232 11432784
    326217 5bj3:C (2.2) BS01 PLP 2.6.1.1
    2.6.1.78
    GO:0003824 ... Q56232 11432784
    326218 5bj3:D (2.2) BS01 PLP 2.6.1.1
    2.6.1.78
    GO:0003824 ... Q56232 11432784
    326219 5bj4:A (2.0) BS01 PLP 2.6.1.1
    2.6.1.78
    GO:0003824 ... Q56232 11432784
    326220 5bj4:B (2.0) BS01 PLP 2.6.1.1
    2.6.1.78
    GO:0003824 ... Q56232 11432784
    326221 5bjs:B (2.189) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326222 5bjs:B (2.189) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326223 5bjs:B (2.189) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326224 5bjs:B (2.189) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326225 5bjs:B (2.189) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326226 5bjs:B (2.189) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326227 5bjs:B (2.189) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326228 5bjs:B (2.189) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    326229 5bjt:A (3.2) BS01 peptide ? N/A P55899 28330995
    326230 5bjt:A (3.2) BS02 peptide ? N/A P55899 28330995
    326231 5bjt:A (3.2) BS03 peptide ? N/A P55899 28330995
    326232 5bjt:C (3.2) BS01 peptide ? N/A P55899 28330995
    326233 5bjt:C (3.2) BS02 peptide ? N/A P55899 28330995
    326234 5bjt:E (3.2) BS01 peptide ? N/A P55899 28330995
    326235 5bjt:E (3.2) BS02 peptide ? N/A P55899 28330995
    326236 5bjt:E (3.2) BS03 peptide ? N/A P55899 28330995
    326237 5bjt:E (3.2) BS04 peptide ? N/A P55899 28330995
    326238 5bju:A (2.0) BS01 UDP ? N/A O86159 29053280
    326239 5bju:A (2.0) BS02 NAD ? N/A O86159 29053280
    326240 5bju:B (2.0) BS01 UDP ? N/A O86159 29053280
    326241 5bju:B (2.0) BS02 NAD ? N/A O86159 29053280
    326242 5bjv:A (1.8) BS01 NAD ? N/A O86159 29053280
    326243 5bjv:A (1.8) BS02 UD1 ? N/A O86159 29053280
    326244 5bjv:B (1.8) BS01 NAD ? N/A O86159 29053280
    326245 5bjv:B (1.8) BS02 UD1 ? N/A O86159 29053280
    326246 5bjw:A (1.6) BS01 UDP ? N/A O86159 29053280
    326247 5bjw:A (1.6) BS02 NAD ? N/A O86159 29053280
    326248 5bjw:B (1.6) BS01 NAD ? N/A O86159 29053280
    326249 5bjw:B (1.6) BS02 UDP ? N/A O86159 29053280
    326250 5bjx:A (1.6) BS01 UDP ? N/A O86159 29053280
    326251 5bjx:A (1.6) BS02 NAD ? N/A O86159 29053280
    326252 5bjx:B (1.6) BS01 UDP ? N/A O86159 29053280
    326253 5bjx:B (1.6) BS02 NAD ? N/A O86159 29053280
    326254 5bjy:A (1.6) BS01 UDP ? N/A O86159 29053280
    326255 5bjy:A (1.6) BS02 NAD ? N/A O86159 29053280
    326256 5bjy:B (1.6) BS01 UDP ? N/A O86159 29053280
    326257 5bjy:B (1.6) BS02 NAD ? N/A O86159 29053280
    326258 5bjz:A (1.95) BS01 GLC ? N/A P0AEX9 29321208
    326259 5bjz:A (1.95) BS02 GLC ? N/A P0AEX9 29321208
    326260 5bjz:B (1.95) BS01 GLC ? N/A P0AEX9 29321208
    326261 5bjz:B (1.95) BS02 GLC ? N/A P0AEX9 29321208
    326262 5bk0:A (3.15) BS01 peptide N/A N/A N/A 29195810
    326263 5bk0:B (3.15) BS01 peptide N/A N/A N/A 29195810
    326264 5bk2:A (2.6) BS01 GLC ? GO:0005515 ... P0AEX9 29321208
    326265 5bk2:A (2.6) BS02 GLC ? GO:0005515 ... P0AEX9 29321208
    326266 5bk2:B (2.6) BS01 GLC ? GO:0005515 ... P0AEX9 29321208
    326267 5bk2:B (2.6) BS02 GLC ? GO:0005515 ... P0AEX9 29321208
    326268 5bk3:B (2.8) BS01 FUC N/A N/A N/A 29195810
    326269 5bk3:D (2.8) BS01 FUC N/A N/A N/A 29195810
    326270 5bk3:F (2.8) BS01 FUC N/A N/A N/A 29195810
    326271 5bk3:L (2.8) BS01 FUC N/A N/A N/A 29195810
    326272 5bk4:2 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 29078375
    326273 5bk4:3 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    326274 5bk4:3 (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    326275 5bk4:4 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P30665 29078375
    326276 5bk4:5 (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    326277 5bk4:5 (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    326278 5bk4:7 (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P38132 29078375
    326279 5bk4:7 (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 29078375
    326280 5bk4:A (3.9) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 29078375
    326281 5bk4:B (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P24279 29078375
    326282 5bk4:B (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    326283 5bk4:B (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 29078375
    326284 5bk4:C (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P30665 29078375
    326285 5bk4:C (3.9) BS02 dna 3.6.4.12 GO:0000727 ... P30665 29078375
    326286 5bk4:D (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P29496 29078375
    326287 5bk4:D (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    326288 5bk4:D (3.9) BS03 ADP 3.6.4.12 GO:0000727 ... P29496 29078375
    326289 5bk4:F (3.9) BS01 dna 3.6.4.12 GO:0000727 ... P38132 29078375
    326290 5bk4:F (3.9) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 29078375
    326291 5bk7:A (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326292 5bk7:B (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326293 5bk7:B (2.196) BS02 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326294 5bk7:C (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326295 5bk7:D (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326296 5bk7:D (2.196) BS02 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326297 5bk7:E (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326298 5bk7:F (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326299 5bk7:G (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326300 5bk7:H (2.196) BS01 EQJ ? GO:0006520 ... A0A0X1KHF5 29473729
    326301 5bk9:A (1.51) BS01 VVO 1.14.11.44 GO:0005737 ... P83310 31209034
    326302 5bk9:B (1.51) BS01 VVO 1.14.11.44 GO:0005737 ... P83310 31209034
    326303 5bkb:A (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    326304 5bkb:A (1.582) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    326305 5bkb:A (1.582) BS03 FTV 1.14.11.44 GO:0005737 ... P83310 31209034
    326306 5bkb:B (1.582) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    326307 5bkb:B (1.582) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    326308 5bkc:A (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    326309 5bkc:A (1.8) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    326310 5bkc:A (1.8) BS03 O0D 1.14.11.44 GO:0005737 ... P83310 31209034
    326311 5bkc:B (1.8) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    326312 5bkc:B (1.8) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    326313 5bkd:A (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    326314 5bkd:A (1.9) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    326315 5bkd:A (1.9) BS03 RCF 1.14.11.44 GO:0005737 ... P83310 31209034
    326316 5bkd:B (1.9) BS01 MN 1.14.11.44 GO:0005737 ... P83310 31209034
    326317 5bkd:B (1.9) BS02 AKG 1.14.11.44 GO:0005737 ... P83310 31209034
    326318 5bkd:B (1.9) BS03 RCF 1.14.11.44 GO:0005737 ... P83310 31209034
    326319 5bke:A (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326320 5bke:B (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326321 5bke:C (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326322 5bke:D (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326323 5bke:E (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326324 5bke:F (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326325 5bke:G (2.15) BS01 MN 1.14.11.- GO:0016491 ... Q89UC4 31209034
    326326 5bkf:A (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    326327 5bkf:A (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    326328 5bkf:B (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    326329 5bkf:B (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    326330 5bkf:C (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    326331 5bkf:C (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    326332 5bkf:D (3.6) BS01 GLY ? GO:0004888 ... P23416 N/A
    326333 5bkf:D (3.6) BS02 GLY ? GO:0004888 ... P23416 N/A
    326334 5bkf:E (3.6) BS01 GLY ? GO:0004888 ... P42212
    P48167
    N/A
    326335 5bkf:E (3.6) BS02 GLY ? GO:0004888 ... P42212
    P48167
    N/A
    326336 5bkg:A (3.8) BS01 GLY ? GO:0004888 ... P23416 N/A
    326337 5bkg:A (3.8) BS02 GLY ? GO:0004888 ... P23416 N/A
    326338 5bkg:B (3.8) BS01 GLY ? GO:0004888 ... P23416 N/A
    326339 5bkg:B (3.8) BS02 GLY ? GO:0004888 ... P23416 N/A
    326340 5bkg:C (3.8) BS01 GLY ? GO:0004888 ... P23416 N/A
    326341 5bkg:E (3.8) BS01 GLY ? GO:0004888 ... P42212
    P48167
    N/A
    326342 5bkj:A (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    326343 5bkj:A (3.5) BS02 YQ1 ? GO:0005886 ... O27564 37653172
    326344 5bkj:C (3.5) BS01 YQ1 ? GO:0005886 ... O27564 37653172
    326345 5bkj:C (3.5) BS02 PGW ? GO:0005886 ... O27564 37653172
    326346 5bkj:E (3.5) BS01 YQ1 ? GO:0005886 ... O27564 37653172
    326347 5bkj:E (3.5) BS02 PGW ? GO:0005886 ... O27564 37653172
    326348 5bkj:G (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    326349 5bkk:A (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    326350 5bkk:A (3.5) BS02 YQ4 ? GO:0005886 ... O27564 37653172
    326351 5bkk:C (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    326352 5bkk:G (3.5) BS01 YQ4 ? GO:0005886 ... O27564 37653172
    326353 5bkl:A (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326354 5bkl:A (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326355 5bkl:D (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326356 5bkl:D (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326357 5bkl:D (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326358 5bkl:E (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326359 5bkl:E (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326360 5bkl:E (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326361 5bkl:E (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    326362 5bkl:F (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326363 5bkl:F (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326364 5bkl:F (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    326365 5bkl:G (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326366 5bkl:G (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326367 5bkl:G (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    326368 5bkl:GG (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326369 5bkl:GG (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326370 5bkl:GG (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326371 5bkl:GG (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    326372 5bkl:H (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326373 5bkl:HH (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326374 5bkl:HH (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326375 5bkl:HH (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326376 5bkl:HH (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    326377 5bkl:HH (2.94) BS05 MG ? GO:0005198 ... P17574 34866603
    326378 5bkl:I (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326379 5bkl:I (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326380 5bkl:I (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    326381 5bkl:II (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326382 5bkl:J (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326383 5bkl:J (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326384 5bkl:J (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326385 5bkl:JJ (2.94) BS01 MG ? GO:0005198 ... P17574 34866603
    326386 5bkl:JJ (2.94) BS02 MG ? GO:0005198 ... P17574 34866603
    326387 5bkl:K (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326388 5bkl:K (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326389 5bkl:K (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326390 5bkl:K (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    326391 5bkl:KK (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326392 5bkl:KK (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326393 5bkl:KK (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    326394 5bkl:O (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    326395 5bkl:O (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    326396 5bkl:O (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    326397 5bkn:A (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    326398 5bkn:A (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    326399 5bkn:B (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    326400 5bkn:D (3.0) BS01 rna ? GO:0005198 ... P17574 34866603

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).