SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    327201 5bti:D (2.501) BS04 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327202 5bti:D (2.501) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327203 5btl:A (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327204 5btl:A (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327205 5btl:A (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327206 5btl:A (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327207 5btl:B (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327208 5btl:B (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327209 5btl:B (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327210 5btl:B (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327211 5btl:B (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327212 5btl:C (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327213 5btl:C (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327214 5btl:C (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327215 5btl:C (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327216 5btl:D (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327217 5btl:D (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327218 5btl:D (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327219 5btl:D (2.5) BS04 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327220 5btl:D (2.5) BS05 8MX 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327221 5btn:A (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327222 5btn:A (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327223 5btn:A (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327224 5btn:A (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327225 5btn:B (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327226 5btn:B (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327227 5btn:B (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327228 5btn:B (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327229 5btn:B (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327230 5btn:C (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327231 5btn:C (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327232 5btn:C (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327233 5btn:C (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG47 26792525
    327234 5btn:D (2.5) BS01 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327235 5btn:D (2.5) BS02 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327236 5btn:D (2.5) BS03 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327237 5btn:D (2.5) BS04 dna 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327238 5btn:D (2.5) BS05 MG 5.6.2.2 GO:0003677 ... P9WG45 26792525
    327239 5btq:A (2.08) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 27490825
    327240 5btq:B (2.08) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 27490825
    327241 5btr:A (3.2) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327242 5btr:A (3.2) BS02 peptide 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327243 5btr:A (3.2) BS03 ZN 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327244 5btr:A (3.2) BS04 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327245 5btr:A (3.2) BS05 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327246 5btr:A (3.2) BS06 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327247 5btr:B (3.2) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327248 5btr:B (3.2) BS02 peptide 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327249 5btr:B (3.2) BS03 ZN 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327250 5btr:B (3.2) BS04 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327251 5btr:B (3.2) BS05 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327252 5btr:B (3.2) BS06 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327253 5btr:C (3.2) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327254 5btr:C (3.2) BS02 peptide 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052
    327255 5btr:C (3.2) BS03 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327256 5btr:C (3.2) BS04 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327257 5btr:C (3.2) BS05 STL 2.3.1.-
    2.3.1.286
    GO:0070403 ... Q96EB6 26109052 BindingDB: EC50=46200nM
    327258 5bts:B (1.77) BS01 peptide ? GO:0005179 ... P01308 26921119
    327259 5btv:A (1.7) BS01 peptide ? GO:0000122 ... P31947 26103986
    327260 5btx:A (2.1) BS01 CMP N/A N/A N/A 26294765 MOAD: Kd=280uM
    327261 5btx:B (2.1) BS01 CMP N/A N/A N/A 26294765 MOAD: Kd=280uM
    327262 5bu2:A (2.11) BS01 ADP N/A N/A N/A 26294765
    327263 5bu2:A (2.11) BS02 ADP N/A N/A N/A 26294765
    327264 5bu2:B (2.11) BS01 AMP N/A N/A N/A 26294765
    327265 5bu2:B (2.11) BS02 ADP N/A N/A N/A 26294765
    327266 5bu2:C (2.11) BS01 AMP N/A N/A N/A 26294765
    327267 5bu2:C (2.11) BS02 ADP N/A N/A N/A 26294765
    327268 5bu2:D (2.11) BS01 RIB N/A N/A N/A 26294765
    327269 5bu3:A (1.897) BS01 4W9 5.-.-.- GO:0016853 ... K7QVW7 26877021
    327270 5bu3:B (1.897) BS01 4W9 5.-.-.- GO:0016853 ... K7QVW7 26877021
    327271 5bu3:C (1.897) BS01 4W9 5.-.-.- GO:0016853 ... K7QVW7 26877021
    327272 5bu3:D (1.897) BS01 4W9 5.-.-.- GO:0016853 ... K7QVW7 26877021
    327273 5bu4:A (1.77) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    327274 5bu5:A (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327275 5bu5:B (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327276 5bu5:D (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327277 5bu5:E (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327278 5bu5:F (1.952) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327279 5bu7:A (2.46) BS01 HEM ? GO:0005506 ... P0ABE7 N/A
    327280 5bu7:A (2.46) BS02 ZN ? GO:0005506 ... P0ABE7 N/A
    327281 5bu7:A (2.46) BS03 ZN ? GO:0005506 ... P0ABE7 N/A
    327282 5bu7:A (2.46) BS04 ZN ? GO:0005506 ... P0ABE7 N/A
    327283 5bu7:A (2.46) BS05 ZN ? GO:0005506 ... P0ABE7 N/A
    327284 5bu7:B (2.46) BS01 HEM ? GO:0005506 ... P0ABE7 N/A
    327285 5bu7:B (2.46) BS02 ZN ? GO:0005506 ... P0ABE7 N/A
    327286 5bu7:B (2.46) BS03 ZN ? GO:0005506 ... P0ABE7 N/A
    327287 5bu7:B (2.46) BS04 ZN ? GO:0005506 ... P0ABE7 N/A
    327288 5bu8:A (2.202) BS01 CA ? N/A Q9AYZ3 26574546
    327289 5bu8:B (2.202) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327290 5bua:A (1.812) BS01 dna ? GO:0000976 ... P04637 27338200
    327291 5bua:A (1.812) BS02 ZN ? GO:0000976 ... P04637 27338200
    327292 5buc:A (1.867) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    327293 5buc:A (1.867) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 N/A
    327294 5buc:A (1.867) BS03 ET 1.10.5.1 GO:0001512 ... P16083 N/A
    327295 5buc:A (1.867) BS04 ET 1.10.5.1 GO:0001512 ... P16083 N/A
    327296 5buc:B (1.867) BS01 ET 1.10.5.1 GO:0001512 ... P16083 N/A
    327297 5buc:B (1.867) BS02 ET 1.10.5.1 GO:0001512 ... P16083 N/A
    327298 5buc:B (1.867) BS03 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    327299 5buc:B (1.867) BS04 FAD 1.10.5.1 GO:0001512 ... P16083 N/A
    327300 5bud:A (1.99) BS01 rna 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    327301 5bud:A (1.99) BS02 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    327302 5bud:A (1.99) BS03 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    327303 5bud:B (1.99) BS01 rna 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    327304 5bud:B (1.99) BS02 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    327305 5bud:B (1.99) BS03 MN 3.6.1.- GO:0000166 ... Q5AAT0 26101253
    327306 5bue:A (2.4) BS01 4V8 2.7.11.24 GO:0000165 ... P28482 26144345 MOAD: ic50=0.003uM
    327307 5buh:A (2.55) BS01 4V7 ? N/A Q30NP1 28197323
    327308 5bui:A (2.12) BS01 4V9 2.7.11.24 GO:0000165 ... P28482 26144345 MOAD: ic50=0.089uM
    327309 5buj:A (1.85) BS01 4VB 2.7.11.24 GO:0000165 ... P28482 26144345 MOAD: ic50=0.005uM
    327310 5buk:A (1.95) BS01 FAD ? GO:0000166 ... J7H1A1 27001835
    327311 5buk:B (1.95) BS01 FAD ? GO:0000166 ... J7H1A1 27001835
    327312 5bul:A (1.9784) BS01 FAD ? GO:0000166 ... A0A140UHM1 27001835
    327313 5buo:A (2.31) BS01 peptide ? GO:0016020 ... P05067 N/A
    327314 5buo:A (2.31) BS02 SGN ? GO:0016020 ... P05067 N/A
    327315 5buo:A (2.31) BS03 ZN ? GO:0016020 ... P05067 N/A
    327316 5buo:A (2.31) BS04 ZN ? GO:0016020 ... P05067 N/A
    327317 5buo:A (2.31) BS05 ZN ? GO:0016020 ... P05067 N/A
    327318 5buq:B (1.98) BS01 CA 6.2.1.26 GO:0005524 ... P23971 26276389
    327319 5bur:A (2.82) BS01 ATP 6.2.1.26 GO:0005524 ... P23971 26276389
    327320 5bur:B (2.82) BS01 ATP 6.2.1.26 GO:0005524 ... P23971 26276389
    327321 5bus:A (2.603) BS01 AMP 6.2.1.26 GO:0005524 ... P23971 26276389
    327322 5bus:B (2.603) BS01 AMP 6.2.1.26 GO:0005524 ... P23971 26276389
    327323 5buu:A (2.07) BS01 4V6 ? GO:0015276 ... P19491 26771108
    327324 5buu:A (2.07) BS02 GLU ? GO:0015276 ... P19491 26771108
    327325 5buu:A (2.07) BS03 4V6 ? GO:0015276 ... P19491 26771108
    327326 5buu:B (2.07) BS01 4V6 ? GO:0015276 ... P19491 26771108
    327327 5buu:B (2.07) BS02 4V6 ? GO:0015276 ... P19491 26771108
    327328 5buu:B (2.07) BS03 GLU ? GO:0015276 ... P19491 26771108
    327329 5buv:A (1.75) BS01 CYT 5.1.3.13 GO:0000271 ... A1JNA0 26174084
    327330 5buv:B (1.75) BS01 CYT 5.1.3.13 GO:0000271 ... A1JNA0 26174084
    327331 5bv2:P (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    327332 5bv2:Q (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    327333 5bv2:R (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    327334 5bv2:S (1.53) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 N/A
    327335 5bv3:A (2.25) BS01 M7G 3.6.1.59 GO:0000288 ... Q06151 26258763 MOAD: Kd=68nM
    327336 5bv3:C (2.25) BS01 M7G 3.6.1.59 GO:0000288 ... Q06151 26258763 MOAD: Kd=68nM
    327337 5bv5:A (2.7) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 26299431
    327338 5bv5:B (2.7) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 26299431
    327339 5bv5:B (2.7) BS02 PIM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 26299431
    327340 5bv5:C (2.7) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 26299431
    327341 5bv5:D (2.7) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 26299431
    327342 5bv6:A (1.94) BS01 35G 2.7.11.12 GO:0004692 ... Q13237 26769964 MOAD: Kd=31nM
    327343 5bv9:A (1.93) BS01 BGC 3.2.1.91 GO:0004553 ... A8FDC4 26572060
    327344 5bv9:A (1.93) BS02 BGC 3.2.1.91 GO:0004553 ... A8FDC4 26572060
    327345 5bv9:A (1.93) BS03 CA 3.2.1.91 GO:0004553 ... A8FDC4 26572060
    327346 5bv9:A (1.93) BS04 CA 3.2.1.91 GO:0004553 ... A8FDC4 26572060
    327347 5bv9:A (1.93) BS05 CA 3.2.1.91 GO:0004553 ... A8FDC4 26572060
    327348 5bva:A (1.873) BS01 FAD ? GO:0000166 ... A0A140UHM3 27001835
    327349 5bvb:A (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    327350 5bvb:A (2.06) BS02 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    327351 5bvb:B (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    327352 5bvb:C (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    327353 5bvb:D (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    327354 5bvc:A (2.0) BS01 ADP 2.7.1.232 GO:0000166 ... B3VI55 26354439
    327355 5bvc:A (2.0) BS02 4PW 2.7.1.232 GO:0000166 ... B3VI55 26354439
    327356 5bvd:A (1.9) BS01 4VF 2.7.11.24 GO:0000165 ... P28482 26259804 MOAD: ic50=0.16nM
    BindingDB: IC50=0.160000nM
    327357 5bve:A (2.0) BS01 4VG 2.7.11.24 GO:0000165 ... P28482 26259804 MOAD: ic50=0.01nM
    BindingDB: IC50=0.010000nM
    327358 5bvf:A (1.9) BS01 4VJ 2.7.11.24 GO:0000165 ... P28482 26259804 MOAD: ic50=0.19nM
    BindingDB: IC50=52nM
    327359 5bvg:A (1.6) BS01 ICG 1.18.6.1 GO:0005524 ... P07328 26673079
    327360 5bvg:A (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 26673079
    327361 5bvg:B (1.6) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 26673079
    327362 5bvg:B (1.6) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327363 5bvg:B (1.6) BS03 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327364 5bvg:C (1.6) BS01 ICG 1.18.6.1 GO:0005524 ... P07328 26673079
    327365 5bvg:C (1.6) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 26673079
    327366 5bvg:D (1.6) BS01 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327367 5bvg:D (1.6) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327368 5bvg:D (1.6) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 26673079
    327369 5bvh:A (1.53) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 26673079
    327370 5bvh:A (1.53) BS02 ICH 1.18.6.1 GO:0005524 ... P07328 26673079
    327371 5bvh:A (1.53) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 26673079
    327372 5bvh:B (1.53) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 26673079
    327373 5bvh:B (1.53) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327374 5bvh:B (1.53) BS03 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327375 5bvh:C (1.53) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 26673079
    327376 5bvh:C (1.53) BS02 ICH 1.18.6.1 GO:0005524 ... P07328 26673079
    327377 5bvh:C (1.53) BS03 CLF 1.18.6.1 GO:0005524 ... P07328 26673079
    327378 5bvh:D (1.53) BS01 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327379 5bvh:D (1.53) BS02 FE2 1.18.6.1 GO:0005524 ... P07329 26673079
    327380 5bvh:D (1.53) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 26673079
    327381 5bvk:A (2.29) BS01 4VC 2.7.10.1 GO:0004672 ... Q08345 26191369 BindingDB: IC50=>100000nM
    327382 5bvn:A (2.21) BS01 4VD 2.7.10.1 GO:0004672 ... Q08345 26191369
    327383 5bvo:A (1.98) BS01 4VE 2.7.10.1 GO:0004672 ... Q08345 26191369
    327384 5bvr:A (1.46) BS01 ZN ? N/A O13728 27069798
    327385 5bvr:A (1.46) BS02 ZN ? N/A O13728 27069798
    327386 5bvs:A (2.2) BS01 EIC ? GO:0005324 ... A0A0K0MJN3 26206084
    327387 5bvs:B (2.2) BS01 EIC ? GO:0005324 ... A0A0K0MJN3 26206084
    327388 5bvu:A (1.61) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 27115290
    327389 5bvw:A (1.94) BS01 1N1 2.7.10.1 GO:0004672 ... Q08345 26191369 BindingDB: Kd=0.69nM, IC50=4.8nM
    327390 5bvz:A (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327391 5bvz:B (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327392 5bvz:C (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327393 5bvz:D (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327394 5bvz:E (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327395 5bvz:F (2.5) BS01 CA ? GO:0046872 ... Q9AYZ3 26574546
    327396 5bw2:A (2.27) BS01 4VU ? GO:0004888 ... Q8WSF8 N/A
    327397 5bw2:A (2.27) BS02 4VU ? GO:0004888 ... Q8WSF8 N/A
    327398 5bw2:B (2.27) BS01 4VU ? GO:0004888 ... Q8WSF8 N/A
    327399 5bw2:C (2.27) BS01 4VU ? GO:0004888 ... Q8WSF8 N/A
    327400 5bw2:C (2.27) BS02 4VU ? GO:0004888 ... Q8WSF8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).