SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    327601 5byq:A (1.73) BS06 4WV 1.12.7.2 GO:0005506 ... P29166 29896366
    327602 5byq:A (1.73) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327603 5byq:B (1.73) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327604 5byq:B (1.73) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327605 5byq:B (1.73) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327606 5byq:B (1.73) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327607 5byq:B (1.73) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    327608 5byq:B (1.73) BS06 4WV 1.12.7.2 GO:0005506 ... P29166 29896366
    327609 5byq:B (1.73) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327610 5byr:A (1.82) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327611 5byr:A (1.82) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327612 5byr:A (1.82) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327613 5byr:A (1.82) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327614 5byr:A (1.82) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    327615 5byr:A (1.82) BS06 4WW 1.12.7.2 GO:0005506 ... P29166 29896366
    327616 5byr:A (1.82) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327617 5byr:A (1.82) BS08 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327618 5byr:B (1.82) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327619 5byr:B (1.82) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327620 5byr:B (1.82) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327621 5byr:B (1.82) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327622 5byr:B (1.82) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    327623 5byr:B (1.82) BS06 4WW 1.12.7.2 GO:0005506 ... P29166 29896366
    327624 5byr:B (1.82) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327625 5bys:A (1.93) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327626 5bys:A (1.93) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327627 5bys:A (1.93) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327628 5bys:A (1.93) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327629 5bys:A (1.93) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    327630 5bys:A (1.93) BS06 4WX 1.12.7.2 GO:0005506 ... P29166 29896366
    327631 5bys:A (1.93) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327632 5bys:B (1.93) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327633 5bys:B (1.93) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327634 5bys:B (1.93) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327635 5bys:B (1.93) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    327636 5bys:B (1.93) BS05 FES 1.12.7.2 GO:0005506 ... P29166 29896366
    327637 5bys:B (1.93) BS06 4WX 1.12.7.2 GO:0005506 ... P29166 29896366
    327638 5bys:B (1.93) BS07 MG 1.12.7.2 GO:0005506 ... P29166 29896366
    327639 5byt:A (2.0) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    327640 5byt:A (2.0) BS02 PRP 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    327641 5byt:B (2.0) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    327642 5byt:B (2.0) BS02 PRP 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    327643 5byu:A (2.4) BS01 COA ? GO:0047617 ... Q5ZRL4 N/A
    327644 5byu:A (2.4) BS02 COA ? GO:0047617 ... Q5ZRL4 N/A
    327645 5byu:B (2.4) BS01 COA ? GO:0047617 ... Q5ZRL4 N/A
    327646 5byu:B (2.4) BS02 COA ? GO:0047617 ... Q5ZRL4 N/A
    327647 5byu:G (2.4) BS01 COA ? GO:0047617 ... Q5ZRL4 N/A
    327648 5byu:G (2.4) BS02 COA ? GO:0047617 ... Q5ZRL4 N/A
    327649 5byu:H (2.4) BS01 COA ? GO:0047617 ... Q5ZRL4 N/A
    327650 5byu:H (2.4) BS02 COA ? GO:0047617 ... Q5ZRL4 N/A
    327651 5byy:A (2.79) BS01 4WG 2.7.11.24 GO:0004672 ... Q13164 27139631 BindingDB: Kd=80nM, IC50=300nM
    327652 5byz:A (1.65) BS01 4WE 2.7.11.24 GO:0004672 ... Q13164 27139631 MOAD: ic50=0.042uM
    327653 5bz0:A (2.1) BS01 ZN 2.1.1.-
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0C6Y1 N/A
    327654 5bz1:A (2.15) BS01 rna ? GO:0003723 ... P39016 26364903
    327655 5bz4:B (2.43) BS01 COA 2.3.1.9 GO:0016746 ... A0QUH3 26627655
    327656 5bz4:D (2.43) BS01 COA 2.3.1.9 GO:0016746 ... A0QUH3 26627655
    327657 5bz4:F (2.43) BS01 COA 2.3.1.9 GO:0016746 ... A0QUH3 26627655
    327658 5bz4:H (2.43) BS01 COA 2.3.1.9 GO:0016746 ... A0QUH3 26627655
    327659 5bz4:K (2.43) BS01 COA 2.3.1.9 GO:0016746 ... A0QUH3 26627655
    327660 5bz5:A (2.8) BS01 rna ? GO:0003723 ... P39016 26364903
    327661 5bzb:B (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    327662 5bzb:B (2.7) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    327663 5bzb:C (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    327664 5bzb:D (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    327665 5bzb:D (2.7) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    327666 5bzc:A (1.95) BS01 4WT ? GO:0005540 ... P15379 N/A
    327667 5bze:A (1.31) BS01 68N ? GO:0005540 ... P15379 N/A
    327668 5bze:A (1.31) BS02 6BT ? GO:0005540 ... P15379 N/A
    327669 5bzf:A (2.77) BS01 4X3 ? GO:0005540 ... P15379 N/A
    327670 5bzg:A (2.19) BS01 4X6 ? GO:0005540 ... P15379 N/A
    327671 5bzh:A (1.95) BS01 4X1 ? GO:0005540 ... P15379 N/A
    327672 5bzi:A (1.32) BS01 4WU ? GO:0005540 ... P15379 N/A
    327673 5bzj:A (1.4) BS01 4WN ? GO:0005540 ... P15379 N/A
    327674 5bzk:A (1.4) BS01 4WP ? GO:0005540 ... P15379 N/A
    327675 5bzl:A (1.23) BS01 4WO ? GO:0005540 ... P15379 N/A
    327676 5bzm:A (1.25) BS01 4X8 ? GO:0005540 ... P15379 N/A
    327677 5bzn:A (1.23) BS01 4XD ? GO:0005540 ... P15379 N/A
    327678 5bzn:A (1.23) BS02 4XD ? GO:0005540 ... P15379 N/A
    327679 5bzo:A (1.22) BS01 4XC ? GO:0005540 ... P15379 N/A
    327680 5bzp:A (1.23) BS01 4XG ? GO:0005540 ... P15379 N/A
    327681 5bzq:A (1.2) BS01 4XL ? GO:0005540 ... P15379 N/A
    327682 5bzr:A (1.15) BS01 4XM ? GO:0005540 ... P15379 N/A
    327683 5bzs:A (1.5) BS01 4XK ? GO:0005540 ... P15379 N/A
    327684 5bzt:A (1.25) BS01 4XJ ? GO:0005540 ... P15379 N/A
    327685 5bzt:A (1.25) BS02 4XJ ? GO:0005540 ... P15379 N/A
    327686 5bzu:A (2.501) BS01 rna ? GO:0003723 ... P39016 26364903
    327687 5bzv:A (2.354) BS01 rna ? GO:0003723 ... P39016 26364903
    327688 5c03:A (1.9) BS01 AGS 2.7.10.2 GO:0004672 ... P29597 26359499 MOAD: Kd=15uM
    327689 5c03:B (1.9) BS01 AGS 2.7.10.2 GO:0004672 ... P29597 26359499 MOAD: Kd=15uM
    327690 5c07:A (2.11) BS01 peptide ? N/A P04439 27183389
    327691 5c07:D (2.11) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327692 5c07:E (2.11) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327693 5c07:F (2.11) BS01 peptide ? N/A P04439 27183389
    327694 5c07:I (2.11) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327695 5c07:J (2.11) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327696 5c08:A (2.332) BS01 peptide ? N/A P04439 27183389
    327697 5c08:D (2.332) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327698 5c08:E (2.332) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327699 5c08:F (2.332) BS01 peptide ? N/A P04439 27183389
    327700 5c08:I (2.332) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327701 5c08:J (2.332) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327702 5c09:A (2.475) BS01 peptide ? N/A P04439 27183389
    327703 5c09:D (2.475) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327704 5c09:E (2.475) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327705 5c09:F (2.475) BS01 peptide ? N/A P04439 27183389
    327706 5c09:I (2.475) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327707 5c09:J (2.475) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327708 5c0a:A (2.46) BS01 peptide ? N/A P04439 27183389
    327709 5c0a:D (2.46) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327710 5c0a:E (2.46) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327711 5c0a:F (2.46) BS01 peptide ? N/A P04439 27183389
    327712 5c0a:I (2.46) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327713 5c0a:J (2.46) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327714 5c0b:A (2.03) BS01 peptide ? N/A P04439 27183389
    327715 5c0b:D (2.03) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327716 5c0b:E (2.03) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327717 5c0b:F (2.03) BS01 peptide ? N/A P04439 27183389
    327718 5c0b:I (2.03) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327719 5c0b:J (2.03) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327720 5c0c:A (1.974) BS01 peptide ? N/A P04439 27183389
    327721 5c0c:D (1.974) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327722 5c0c:E (1.974) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327723 5c0c:F (1.974) BS01 peptide ? N/A P04439 27183389
    327724 5c0c:I (1.974) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848
    27183389
    327725 5c0c:J (1.974) BS01 peptide ? N/A A0A0B4J2E0
    A0A5B9
    27183389
    327726 5c0d:A (1.68) BS01 peptide ? N/A P04439 27183389
    327727 5c0e:A (1.491) BS01 peptide ? N/A P04439 27183389
    327728 5c0f:A (1.463) BS01 peptide ? N/A P04439 27183389
    327729 5c0g:A (1.37) BS01 peptide ? N/A P04439 27183389
    327730 5c0i:A (1.53) BS01 peptide ? N/A P04439 27183389
    327731 5c0i:B (1.53) BS01 CA ? GO:0000139 ... P61769 27183389
    327732 5c0j:A (1.64) BS01 peptide ? N/A P04439 27183389
    327733 5c0j:B (1.64) BS01 CA ? GO:0000139 ... P61769 27183389
    327734 5c0k:A (2.2) BS01 ZN 2.3.2.27 N/A P98170 26218264
    327735 5c0k:A (2.2) BS02 4WK 2.3.2.27 N/A P98170 26218264 MOAD: ic50=1200uM
    327736 5c0l:A (2.6) BS01 ZN 2.3.2.27 N/A P98170 26218264
    327737 5c0l:A (2.6) BS02 4WJ 2.3.2.27 N/A P98170 26218264
    327738 5c0m:A (1.6) BS01 peptide ? GO:0000124 ... Q96ES7 26578293
    327739 5c0m:B (1.6) BS01 peptide ? GO:0000124 ... Q96ES7 26578293
    327740 5c0o:E (2.62) BS01 SAM 2.1.1.220 GO:0008033 ... Q8GBB2 26189113
    327741 5c0o:F (2.62) BS01 SAM 2.1.1.220 GO:0008033 ... Q8GBB2 26189113
    327742 5c0o:G (2.62) BS01 SAM 2.1.1.220 GO:0008033 ... Q8GBB2 26189113
    327743 5c0o:H (2.62) BS01 SAM 2.1.1.220 GO:0008033 ... Q8GBB2 26189113
    327744 5c0p:A (1.532) BS01 MG ? GO:0004553 ... Q8A6K8 N/A
    327745 5c0q:A (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327746 5c0q:A (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327747 5c0q:A (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327748 5c0q:A (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327749 5c0q:B (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327750 5c0q:B (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327751 5c0q:B (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327752 5c0q:B (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327753 5c0q:B (2.499) BS05 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327754 5c0q:C (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327755 5c0q:C (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327756 5c0q:C (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327757 5c0q:C (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327758 5c0q:C (2.499) BS05 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327759 5c0q:D (2.499) BS01 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327760 5c0q:D (2.499) BS02 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327761 5c0q:D (2.499) BS03 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327762 5c0q:D (2.499) BS04 ZN 3.2.1.52 GO:0004553 ... Q9AG27 26187666
    327763 5c0u:A (1.87) BS01 CU 4.99.1.2 GO:0016829 ... P77072 26820485
    327764 5c0u:B (1.87) BS01 CU 4.99.1.2 GO:0016829 ... P77072 26820485
    327765 5c0w:J (4.6) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    327766 5c0w:J (4.6) BS02 MG 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    327767 5c0w:J (4.6) BS03 ZN 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    327768 5c0w:K (4.6) BS01 rna 3.1.13.- GO:0000166 ... Q12149 26222026
    327769 5c0x:G (3.812) BS01 rna ? GO:0000176 ... Q08285 26222026
    327770 5c0x:H (3.812) BS01 rna ? GO:0000176 ... P38792 26222026
    327771 5c0x:J (3.812) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    327772 5c0x:J (3.812) BS02 ZN 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 26222026
    327773 5c0y:A (2.1) BS01 rna 3.1.13.- GO:0000166 ... Q12149 26222026
    327774 5c0y:B (2.1) BS01 rna 3.1.13.- GO:0000166 ... Q12149 26222026
    327775 5c0y:B (2.1) BS02 MG 3.1.13.- GO:0000166 ... Q12149 26222026
    327776 5c0z:A (1.1236) BS01 HEC ? GO:0002931 ... P62898 31570002
    327777 5c0z:B (1.1236) BS01 HEC ? GO:0002931 ... P62898 31570002
    327778 5c0z:B (1.1236) BS02 FC6 ? GO:0002931 ... P62898 31570002
    327779 5c0z:C (1.1236) BS01 FC6 ? GO:0002931 ... P62898 31570002
    327780 5c0z:C (1.1236) BS02 HEC ? GO:0002931 ... P62898 31570002
    327781 5c0z:C (1.1236) BS03 FC6 ? GO:0002931 ... P62898 31570002
    327782 5c0z:D (1.1236) BS01 FC6 ? GO:0002931 ... P62898 31570002
    327783 5c0z:D (1.1236) BS02 HEC ? GO:0002931 ... P62898 31570002
    327784 5c11:A (2.803) BS01 peptide 1.14.11.67 N/A P29375 N/A
    327785 5c11:A (2.803) BS02 ZN 1.14.11.67 N/A P29375 N/A
    327786 5c11:A (2.803) BS03 ZN 1.14.11.67 N/A P29375 N/A
    327787 5c12:A (1.517) BS01 MG ? N/A Q716H3 26450964
    327788 5c12:A (1.517) BS02 MG ? N/A Q716H3 26450964
    327789 5c13:A (2.101) BS01 peptide ? N/A Q5VWG9 N/A
    327790 5c13:A (2.101) BS02 peptide ? N/A Q5VWG9 N/A
    327791 5c13:A (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    327792 5c13:A (2.101) BS04 ZN ? N/A Q5VWG9 N/A
    327793 5c13:C (2.101) BS01 peptide ? N/A Q5VWG9 N/A
    327794 5c13:C (2.101) BS02 peptide ? N/A Q5VWG9 N/A
    327795 5c13:C (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    327796 5c13:C (2.101) BS04 ZN ? N/A Q5VWG9 N/A
    327797 5c13:E (2.101) BS01 peptide ? N/A Q5VWG9 N/A
    327798 5c13:E (2.101) BS02 ZN ? N/A Q5VWG9 N/A
    327799 5c13:E (2.101) BS03 ZN ? N/A Q5VWG9 N/A
    327800 5c13:G (2.101) BS01 peptide ? N/A Q5VWG9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).