SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    330401 5cpi:C (2.902) BS02 dna ? GO:0000786 ... P04908 26446621
    330402 5cpi:D (2.902) BS01 dna ? GO:0000786 ... P06899 26446621
    330403 5cpi:D (2.902) BS02 dna ? GO:0000786 ... P06899 26446621
    330404 5cpi:E (2.902) BS01 dna ? GO:0000786 ... P68431 26446621
    330405 5cpi:E (2.902) BS02 dna ? GO:0000786 ... P68431 26446621
    330406 5cpi:F (2.902) BS01 dna ? GO:0000781 ... P62805 26446621
    330407 5cpi:F (2.902) BS02 dna ? GO:0000781 ... P62805 26446621
    330408 5cpi:G (2.902) BS01 dna ? GO:0000786 ... P04908 26446621
    330409 5cpi:G (2.902) BS02 dna ? GO:0000786 ... P04908 26446621
    330410 5cpi:H (2.902) BS01 dna ? GO:0000786 ... P06899 26446621
    330411 5cpi:H (2.902) BS02 dna ? GO:0000786 ... P06899 26446621
    330412 5cpj:A (3.15) BS01 dna ? GO:0000786 ... P68431 26446621
    330413 5cpj:A (3.15) BS02 dna ? GO:0000786 ... P68431 26446621
    330414 5cpj:B (3.15) BS01 dna ? GO:0000781 ... P62805 26446621
    330415 5cpj:B (3.15) BS02 dna ? GO:0000781 ... P62805 26446621
    330416 5cpj:C (3.15) BS01 dna ? GO:0000786 ... P04908 26446621
    330417 5cpj:C (3.15) BS02 dna ? GO:0000786 ... P04908 26446621
    330418 5cpj:D (3.15) BS01 dna ? GO:0000786 ... P06899 26446621
    330419 5cpj:D (3.15) BS02 dna ? GO:0000786 ... P06899 26446621
    330420 5cpj:E (3.15) BS01 dna ? GO:0000786 ... P68431 26446621
    330421 5cpj:E (3.15) BS02 dna ? GO:0000786 ... P68431 26446621
    330422 5cpj:F (3.15) BS01 dna ? GO:0000781 ... P62805 26446621
    330423 5cpj:F (3.15) BS02 dna ? GO:0000781 ... P62805 26446621
    330424 5cpj:G (3.15) BS01 dna ? GO:0000786 ... P04908 26446621
    330425 5cpj:G (3.15) BS02 dna ? GO:0000786 ... P04908 26446621
    330426 5cpj:H (3.15) BS01 dna ? GO:0000786 ... P06899 26446621
    330427 5cpj:H (3.15) BS02 dna ? GO:0000786 ... P06899 26446621
    330428 5cpk:A (2.632) BS01 dna ? GO:0000786 ... P68431 26446621
    330429 5cpk:A (2.632) BS02 dna ? GO:0000786 ... P68431 26446621
    330430 5cpk:B (2.632) BS01 dna ? GO:0000781 ... P62805 26446621
    330431 5cpk:B (2.632) BS02 dna ? GO:0000781 ... P62805 26446621
    330432 5cpk:C (2.632) BS01 dna ? GO:0000786 ... P04908 26446621
    330433 5cpk:C (2.632) BS02 dna ? GO:0000786 ... P04908 26446621
    330434 5cpk:D (2.632) BS01 dna ? GO:0000786 ... P06899 26446621
    330435 5cpk:D (2.632) BS02 dna ? GO:0000786 ... P06899 26446621
    330436 5cpk:E (2.632) BS01 dna ? GO:0000786 ... P68431 26446621
    330437 5cpk:E (2.632) BS02 dna ? GO:0000786 ... P68431 26446621
    330438 5cpk:F (2.632) BS01 dna ? GO:0000781 ... P62805 26446621
    330439 5cpk:F (2.632) BS02 dna ? GO:0000781 ... P62805 26446621
    330440 5cpk:G (2.632) BS01 dna ? GO:0000786 ... P04908 26446621
    330441 5cpk:G (2.632) BS02 dna ? GO:0000786 ... P04908 26446621
    330442 5cpk:H (2.632) BS01 dna ? GO:0000786 ... P06899 26446621
    330443 5cpk:H (2.632) BS02 dna ? GO:0000786 ... P06899 26446621
    330444 5cpl:A (1.57) BS01 536 ? GO:0000166 ... Q9R9V9 26727612 MOAD: Kd<25uM
    330445 5cpl:A (1.57) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330446 5cpl:B (1.57) BS01 536 ? GO:0000166 ... Q9R9V9 26727612 MOAD: Kd<25uM
    330447 5cpl:B (1.57) BS02 CA ? GO:0000166 ... Q9R9V9 26727612
    330448 5cpl:B (1.57) BS03 FNR ? GO:0000166 ... Q9R9V9 26727612
    330449 5cpm:A (1.5) BS01 NDP ? GO:0000166 ... Q9R9V9 26727612 MOAD: Kd=27uM
    330450 5cpm:A (1.5) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330451 5cpm:B (1.5) BS01 NDP ? GO:0000166 ... Q9R9V9 26727612 MOAD: Kd=27uM
    330452 5cpm:B (1.5) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330453 5cpn:A (1.8) BS01 531 ? GO:0000166 ... Q9R9V9 26727612
    330454 5cpn:A (1.8) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330455 5cpn:B (1.8) BS01 531 ? GO:0000166 ... Q9R9V9 26727612
    330456 5cpn:B (1.8) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330457 5cpo:A (1.65) BS01 XEN ? GO:0000166 ... Q9R9V9 26727612
    330458 5cpo:A (1.65) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330459 5cpo:B (1.65) BS01 XEN ? GO:0000166 ... Q9R9V9 26727612
    330460 5cpo:B (1.65) BS02 FNR ? GO:0000166 ... Q9R9V9 26727612
    330461 5cpo:B (1.65) BS03 CA ? GO:0000166 ... Q9R9V9 26727612
    330462 5cpp:A (2.08) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2713354
    330463 5cpp:A (2.08) BS02 ADO 1.14.15.1 GO:0004497 ... P00183 2713354
    330464 5cpr:B (2.22) BS01 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 28114273
    330465 5cpr:B (2.22) BS02 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 28114273
    330466 5cpr:B (2.22) BS03 539 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 28114273 MOAD: Kd=27.8nM
    BindingDB: IC50=25nM
    330467 5cps:A (1.8) BS01 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330468 5cps:A (1.8) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330469 5cps:A (1.8) BS03 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330470 5cps:A (1.8) BS04 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330471 5cps:A (1.8) BS05 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330472 5cps:B (1.8) BS01 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330473 5cps:B (1.8) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330474 5cps:B (1.8) BS03 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330475 5cps:B (1.8) BS04 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330476 5cps:B (1.8) BS05 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330477 5cpt:A (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330478 5cpt:A (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330479 5cpt:B (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330480 5cpt:B (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330481 5cpv:A (1.6) BS01 CA ? GO:0005509 ... P02618 2777802
    330482 5cpv:A (1.6) BS02 CA ? GO:0005509 ... P02618 2777802
    330483 5cpw:A (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    330484 5cpw:A (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    330485 5cpw:A (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    330486 5cpw:B (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    330487 5cpw:B (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    330488 5cpw:B (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    330489 5cpw:C (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    330490 5cpw:C (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    330491 5cpw:C (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    330492 5cpw:D (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    330493 5cpw:D (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    330494 5cpw:D (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    330495 5cpw:E (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    330496 5cpw:E (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    330497 5cpw:E (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    330498 5cpx:A (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    330499 5cpx:A (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    330500 5cpx:B (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    330501 5cpx:B (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    330502 5cpx:C (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    330503 5cpx:C (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    330504 5cpx:D (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    330505 5cpx:D (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    330506 5cpx:E (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    330507 5cpx:E (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    330508 5cpy:A (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    330509 5cpy:A (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    330510 5cpy:B (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    330511 5cpy:B (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    330512 5cpy:C (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    330513 5cpy:C (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    330514 5cpy:D (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    330515 5cpy:D (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    330516 5cpy:E (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    330517 5cpy:E (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    330518 5cpz:A (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    330519 5cpz:A (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    330520 5cpz:A (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    330521 5cpz:B (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    330522 5cpz:B (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    330523 5cpz:B (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    330524 5cpz:C (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    330525 5cpz:C (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    330526 5cpz:C (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    330527 5cpz:D (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    330528 5cpz:D (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    330529 5cpz:D (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    330530 5cpz:E (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    330531 5cpz:E (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    330532 5cpz:E (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    330533 5cq0:A (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    330534 5cq0:A (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    330535 5cq0:B (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    330536 5cq0:B (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    330537 5cq0:C (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    330538 5cq0:C (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    330539 5cq0:D (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    330540 5cq0:D (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    330541 5cq0:E (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    330542 5cq0:E (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    330543 5cq1:A (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330544 5cq1:A (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330545 5cq1:B (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330546 5cq1:B (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330547 5cq1:B (2.3) BS03 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    330548 5cq2:A (1.4) BS01 peptide 2.3.2.26 N/A Q96J02 26527736
    330549 5cq2:A (1.4) BS02 peptide 2.3.2.26 N/A Q96J02 26527736
    330550 5cq3:A (1.925) BS01 53B ? N/A Q9UIF8 N/A
    330551 5cq5:A (1.961) BS01 53E ? N/A Q9UIF8 N/A
    330552 5cq6:A (1.97) BS01 PDC ? N/A Q9UIF8 N/A
    330553 5cq7:A (1.86) BS01 53G ? N/A Q9UIF8 N/A
    330554 5cq9:B (3.0) BS01 peptide ? GO:0005576 ... Q8ZQC8 26299973
    330555 5cqa:A (2.13) BS01 2LY ? N/A Q9UIF8 N/A BindingDB: IC50=241000nM
    330556 5cqd:A (2.08) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    330557 5cqd:C (2.08) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    330558 5cqg:A (2.3) BS01 55C 2.7.7.49 GO:0000723 ... Q0QHL8 26365799
    330559 5cqg:B (2.3) BS01 55C 2.7.7.49 GO:0000723 ... Q0QHL8 26365799
    330560 5cqh:A (1.73) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    330561 5cqh:A (1.73) BS02 DC 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    330562 5cqi:A (1.68) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    330563 5cqj:A (2.15) BS01 53Q 2.5.1.31 GO:0000287 ... P60472 26283394 MOAD: ic50=15.4uM
    330564 5cqk:A (1.88) BS01 ZN 3.5.4.38 GO:0003824 ... Q9UH17 26416889
    330565 5cqq:A (3.1) BS01 dna ? N/A P09956 26478222
    330566 5cqq:B (3.1) BS01 dna ? N/A P09956 26478222
    330567 5cqq:B (3.1) BS02 dna ? N/A P09956 26478222
    330568 5cqt:A (1.6) BS01 EB3 ? N/A O60885 26731490 MOAD: Kd=0.124uM
    BindingDB: Kd=124nM, IC50=130nM
    330569 5cqu:A (2.35) BS01 JRJ 2.7.11.1 GO:0004672 ... P68400 N/A
    330570 5cqw:A (2.65) BS01 JRJ 2.7.11.1 GO:0004672 ... P68400 N/A
    330571 5cqw:B (2.65) BS01 JRJ 2.7.11.1 GO:0004672 ... P68400 N/A
    330572 5cqx:A (1.63) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    330573 5cqx:B (1.63) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    330574 5cqy:A (2.481) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    330575 5cqy:B (2.481) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    330576 5cqz:A (2.9) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330577 5cqz:A (2.9) BS02 53O 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330578 5cqz:A (2.9) BS03 53O 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330579 5cqz:B (2.9) BS01 53O 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330580 5cqz:B (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330581 5cqz:B (2.9) BS03 53O 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330582 5cr0:A (2.75) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    330583 5cr0:A (2.75) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    330584 5cr0:B (2.75) BS01 MG 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    330585 5cr0:B (2.75) BS02 DCP 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 26836966
    330586 5cr1:A (1.545) BS01 T44 ? GO:0001523 ... P02766 26468275 BindingDB: IC50=10500nM
    330587 5cr1:B (1.545) BS01 STL ? GO:0001523 ... P02766 26468275 BindingDB: Kd=470nM
    330588 5cr2:A (2.9) BS01 dna 3.1.27.- GO:0003677 ... P0AE70 27026704
    330589 5cr2:B (2.9) BS01 dna 3.1.27.- GO:0003677 ... P0AE70 27026704
    330590 5cr2:C (2.9) BS01 dna 3.1.27.- GO:0003677 ... P0AE70 27026704
    330591 5cr3:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    330592 5cr3:A (1.8) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    330593 5cr5:A (1.61) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 26288694
    330594 5cr5:A (1.61) BS02 EL1 2.6.1.42 GO:0003824 ... O15382 26288694 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    330595 5cr5:B (1.61) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 26288694
    330596 5cr5:B (1.61) BS02 EL1 2.6.1.42 GO:0003824 ... O15382 26288694 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    330597 5cr7:A (2.9) BS01 5WO 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330598 5cr7:A (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330599 5cr7:B (2.9) BS01 5WO 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519
    330600 5cr7:B (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 26599519

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).