SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    331601 5czp:XT (3.29996) BS02 MG ? GO:0003723 ... P80380 27681416
    331602 5czp:XY (3.29996) BS01 rna ? GO:0003747 ... P07012 27681416
    331603 5czp:XY (3.29996) BS02 rna ? GO:0003747 ... P07012 27681416
    331604 5czp:XY (3.29996) BS03 rna ? GO:0003747 ... P07012 27681416
    331605 5czp:XY (3.29996) BS04 rna ? GO:0003747 ... P07012 27681416
    331606 5czp:XY (3.29996) BS05 MG ? GO:0003747 ... P07012 27681416
    331607 5czp:XY (3.29996) BS06 MG ? GO:0003747 ... P07012 27681416
    331608 5czp:Y0 (3.29996) BS01 rna ? GO:0003735 ... P60493 27681416
    331609 5czp:Y0 (3.29996) BS02 rna ? GO:0003735 ... P60493 27681416
    331610 5czp:Y0 (3.29996) BS03 rna ? GO:0003735 ... P60493 27681416
    331611 5czp:Y1 (3.29996) BS01 rna ? GO:0003735 ... P60494 27681416
    331612 5czp:Y2 (3.29996) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    331613 5czp:Y3 (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    331614 5czp:Y3 (3.29996) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    331615 5czp:Y4 (3.29996) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    331616 5czp:Y4 (3.29996) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    331617 5czp:Y5 (3.29996) BS01 rna ? GO:0003735 ... P80339 27681416
    331618 5czp:Y5 (3.29996) BS02 MG ? GO:0003735 ... P80339 27681416
    331619 5czp:Y5 (3.29996) BS03 MG ? GO:0003735 ... P80339 27681416
    331620 5czp:Y5 (3.29996) BS04 ZN ? GO:0003735 ... P80339 27681416
    331621 5czp:Y6 (3.29996) BS01 rna ? GO:0000049 ... P35871 27681416
    331622 5czp:Y6 (3.29996) BS02 ZN ? GO:0000049 ... P35871 27681416
    331623 5czp:Y7 (3.29996) BS01 rna ? GO:0003735 ... P80340 27681416
    331624 5czp:Y7 (3.29996) BS02 MG ? GO:0003735 ... P80340 27681416
    331625 5czp:Y8 (3.29996) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    331626 5czp:Y9 (3.29996) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    331627 5czp:Y9 (3.29996) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    331628 5czp:YD (3.29996) BS01 rna ? GO:0002181 ... P60405 27681416
    331629 5czp:YD (3.29996) BS02 rna ? GO:0002181 ... P60405 27681416
    331630 5czp:YD (3.29996) BS03 MG ? GO:0002181 ... P60405 27681416
    331631 5czp:YD (3.29996) BS04 MG ? GO:0002181 ... P60405 27681416
    331632 5czp:YD (3.29996) BS05 MG ? GO:0002181 ... P60405 27681416
    331633 5czp:YD (3.29996) BS06 MG ? GO:0002181 ... P60405 27681416
    331634 5czp:YD (3.29996) BS07 MG ? GO:0002181 ... P60405 27681416
    331635 5czp:YD (3.29996) BS08 MG ? GO:0002181 ... P60405 27681416
    331636 5czp:YD (3.29996) BS09 MG ? GO:0002181 ... P60405 27681416
    331637 5czp:YD (3.29996) BS10 MG ? GO:0002181 ... P60405 27681416
    331638 5czp:YE (3.29996) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    331639 5czp:YE (3.29996) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    331640 5czp:YE (3.29996) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    331641 5czp:YF (3.29996) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    331642 5czp:YF (3.29996) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    331643 5czp:YF (3.29996) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    331644 5czp:YF (3.29996) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    331645 5czp:YF (3.29996) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    331646 5czp:YG (3.29996) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    331647 5czp:YG (3.29996) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    331648 5czp:YG (3.29996) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    331649 5czp:YG (3.29996) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    331650 5czp:YG (3.29996) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    331651 5czp:YH (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    331652 5czp:YI (3.29996) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    331653 5czp:YI (3.29996) BS02 rna ? GO:0003735 ... Q5SLQ1 27681416
    331654 5czp:YN (3.29996) BS01 rna ? GO:0003729 ... P60488 27681416
    331655 5czp:YO (3.29996) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    331656 5czp:YO (3.29996) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    331657 5czp:YP (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    331658 5czp:YQ (3.29996) BS01 rna ? GO:0000049 ... P60489 27681416
    331659 5czp:YQ (3.29996) BS02 rna ? GO:0000049 ... P60489 27681416
    331660 5czp:YQ (3.29996) BS03 rna ? GO:0000049 ... P60489 27681416
    331661 5czp:YQ (3.29996) BS04 MG ? GO:0000049 ... P60489 27681416
    331662 5czp:YQ (3.29996) BS05 MG ? GO:0000049 ... P60489 27681416
    331663 5czp:YR (3.29996) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    331664 5czp:YR (3.29996) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    331665 5czp:YS (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    331666 5czp:YS (3.29996) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    331667 5czp:YT (3.29996) BS01 rna ? GO:0003735 ... P60490 27681416
    331668 5czp:YT (3.29996) BS02 rna ? GO:0003735 ... P60490 27681416
    331669 5czp:YU (3.29996) BS01 rna ? GO:0000027 ... P60491 27681416
    331670 5czp:YU (3.29996) BS02 MG ? GO:0000027 ... P60491 27681416
    331671 5czp:YV (3.29996) BS01 rna ? GO:0003723 ... P60492 27681416
    331672 5czp:YV (3.29996) BS02 MG ? GO:0003723 ... P60492 27681416
    331673 5czp:YV (3.29996) BS03 MG ? GO:0003723 ... P60492 27681416
    331674 5czp:YW (3.29996) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    331675 5czp:YW (3.29996) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    331676 5czp:YW (3.29996) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    331677 5czp:YX (3.29996) BS01 rna ? GO:0003735 ... Q5SHP0 27681416
    331678 5czp:YY (3.29996) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    331679 5czp:YY (3.29996) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    331680 5czp:YZ (3.29996) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    331681 5czp:YZ (3.29996) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    331682 5czp:YZ (3.29996) BS03 rna ? GO:0003723 ... Q5SHZ1 27681416
    331683 5czr:A (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    331684 5czr:A (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    331685 5czr:A (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    331686 5czr:A (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    331687 5czr:B (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    331688 5czr:B (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    331689 5czr:B (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    331690 5czr:B (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    331691 5czr:C (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    331692 5czr:C (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    331693 5czr:C (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    331694 5czr:C (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    331695 5czr:D (2.3) BS01 CA ? GO:0005509 ... Q9BYE9 N/A
    331696 5czr:D (2.3) BS02 CA ? GO:0005509 ... Q9BYE9 N/A
    331697 5czr:D (2.3) BS03 CA ? GO:0005509 ... Q9BYE9 N/A
    331698 5czr:D (2.3) BS04 CA ? GO:0005509 ... Q9BYE9 N/A
    331699 5czs:A (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331700 5czs:A (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331701 5czs:A (2.42) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331702 5czs:B (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331703 5czs:B (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331704 5czs:B (2.42) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331705 5czs:C (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331706 5czs:C (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331707 5czs:C (2.42) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331708 5czs:D (2.42) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331709 5czs:D (2.42) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331710 5czs:D (2.42) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331711 5czt:A (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331712 5czt:A (2.04) BS02 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331713 5czt:B (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331714 5czt:B (2.04) BS02 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331715 5czt:C (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331716 5czt:C (2.04) BS02 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331717 5czt:D (2.04) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331718 5czt:D (2.04) BS02 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331719 5czu:A (1.6) BS01 4LF ? GO:0005506 ... P02791 26404005
    331720 5czv:A (3.19) BS01 CA ? GO:0006355 ... Q9UM47 27157619
    331721 5czv:A (3.19) BS02 CA ? GO:0006355 ... Q9UM47 27157619
    331722 5czv:A (3.19) BS03 CA ? GO:0006355 ... Q9UM47 27157619
    331723 5czw:A (1.6) BS01 ZN ? GO:0004222 ... B5B0E6 28188295
    331724 5czx:A (2.1) BS01 CA ? GO:0006355 ... Q9UM47 27157619
    331725 5czx:A (2.1) BS02 CA ? GO:0006355 ... Q9UM47 27157619
    331726 5czx:A (2.1) BS03 CA ? GO:0006355 ... Q9UM47 27157619
    331727 5czx:B (2.1) BS01 CA ? GO:0006355 ... Q9UM47 27157619
    331728 5czx:B (2.1) BS02 CA ? GO:0006355 ... Q9UM47 27157619
    331729 5czx:B (2.1) BS03 CA ? GO:0006355 ... Q9UM47 27157619
    331730 5czy:A (2.2) BS01 SAM ? N/A Q5ZUS4 26315269
    331731 5czz:A (2.6) BS01 rna 3.1.-.- GO:0003676 ... J7RUA5 26317473
    331732 5czz:A (2.6) BS02 dna 3.1.-.- GO:0003676 ... J7RUA5 26317473
    331733 5czz:A (2.6) BS03 dna 3.1.-.- GO:0003676 ... J7RUA5 26317473
    331734 5d00:A (2.15) BS01 GMT 2.4.1.- GO:0000166 ... P42982 27454321
    331735 5d00:B (2.15) BS01 GMT 2.4.1.- GO:0000166 ... P42982 27454321
    331736 5d00:B (2.15) BS02 U5P 2.4.1.- GO:0000166 ... P42982 27454321
    331737 5d01:A (2.02) BS01 GMT 2.4.1.- GO:0000166 ... P42982 27454321
    331738 5d01:B (2.02) BS01 GMT 2.4.1.- GO:0000166 ... P42982 27454321
    331739 5d02:A (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331740 5d02:A (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331741 5d02:B (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331742 5d02:B (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331743 5d02:C (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331744 5d02:C (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331745 5d02:D (1.87) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331746 5d02:D (1.87) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331747 5d03:A (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331748 5d03:A (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331749 5d03:B (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331750 5d03:B (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331751 5d03:C (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331752 5d03:C (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331753 5d03:D (1.84) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331754 5d03:D (1.84) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331755 5d04:C (1.7) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331756 5d04:C (1.7) BS02 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331757 5d04:D (1.7) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331758 5d04:D (1.7) BS02 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331759 5d05:A (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331760 5d05:A (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331761 5d05:A (1.75) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331762 5d05:B (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331763 5d05:B (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331764 5d05:B (1.75) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331765 5d05:C (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331766 5d05:C (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331767 5d05:C (1.75) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331768 5d05:D (1.75) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331769 5d05:D (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331770 5d05:D (1.75) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331771 5d08:A (1.747) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331772 5d08:A (1.747) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331773 5d08:A (1.747) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    331774 5d08:B (1.747) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331775 5d08:B (1.747) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331776 5d08:B (1.747) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    331777 5d09:A (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331778 5d09:A (2.35) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331779 5d09:B (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331780 5d09:C (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331781 5d09:D (2.35) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    331782 5d0a:A (2.1) BS01 rna 1.17.99.6 GO:0005737 ... P97030 27638883
    331783 5d0a:A (2.1) BS02 rna 1.17.99.6 GO:0005737 ... P97030 27638883
    331784 5d0a:A (2.1) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331785 5d0a:A (2.1) BS04 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331786 5d0a:A (2.1) BS05 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    331787 5d0a:B (2.1) BS01 rna 1.17.99.6 GO:0005737 ... P97030 27638883
    331788 5d0a:B (2.1) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331789 5d0a:B (2.1) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331790 5d0a:B (2.1) BS04 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    331791 5d0a:C (2.1) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331792 5d0a:C (2.1) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331793 5d0a:C (2.1) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    331794 5d0a:D (2.1) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331795 5d0a:D (2.1) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331796 5d0a:D (2.1) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    331797 5d0b:A (2.645) BS01 rna 1.17.99.6 GO:0005737 ... P97030 27638883
    331798 5d0b:A (2.645) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331799 5d0b:A (2.645) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    331800 5d0b:A (2.645) BS04 B12 1.17.99.6 GO:0005737 ... P97030 27638883

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).