SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    332201 5d49:A (1.99) BS04 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332202 5d49:A (1.99) BS05 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332203 5d4a:A (1.7) BS01 57Q ? GO:0005324 ... P15090 27096055 BindingDB: Ki=>1400nM
    332204 5d4b:A (2.66) BS01 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332205 5d4b:A (2.66) BS02 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332206 5d4b:A (2.66) BS03 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332207 5d4b:A (2.66) BS04 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332208 5d4b:B (2.66) BS01 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332209 5d4b:B (2.66) BS02 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332210 5d4b:B (2.66) BS03 dna 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332211 5d4b:B (2.66) BS04 MG 2.7.7.31
    3.1.11.-
    GO:0003677 ... P09838 27499438
    332212 5d4c:B (3.28) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    332213 5d4c:C (3.28) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332214 5d4c:C (3.28) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332215 5d4c:C (3.28) BS03 C 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332216 5d4c:D (3.28) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332217 5d4c:D (3.28) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332218 5d4c:D (3.28) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332219 5d4c:D (3.28) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332220 5d4c:D (3.28) BS05 C 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332221 5d4c:F (3.28) BS01 dna ? GO:0003677 ... Q5SKW1 27383794
    332222 5d4c:F (3.28) BS02 dna ? GO:0003677 ... Q5SKW1 27383794
    332223 5d4c:F (3.28) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    332224 5d4c:K (3.28) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    332225 5d4c:L (3.28) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    332226 5d4c:M (3.28) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332227 5d4c:M (3.28) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332228 5d4c:N (3.28) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332229 5d4c:N (3.28) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332230 5d4c:N (3.28) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332231 5d4c:N (3.28) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332232 5d4c:N (3.28) BS05 C 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332233 5d4c:P (3.28) BS01 dna ? GO:0003677 ... Q5SKW1 27383794
    332234 5d4c:P (3.28) BS02 dna ? GO:0003677 ... Q5SKW1 27383794
    332235 5d4c:P (3.28) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    332236 5d4d:C (3.0) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332237 5d4d:C (3.0) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332238 5d4d:C (3.0) BS03 NAD 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332239 5d4d:D (3.0) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332240 5d4d:D (3.0) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332241 5d4d:D (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332242 5d4d:D (3.0) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332243 5d4d:D (3.0) BS05 C 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332244 5d4d:F (3.0) BS01 dna ? GO:0003677 ... Q5SKW1 27383794
    332245 5d4d:F (3.0) BS02 dna ? GO:0003677 ... Q5SKW1 27383794
    332246 5d4d:F (3.0) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    332247 5d4d:L (3.0) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 27383794
    332248 5d4d:M (3.0) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332249 5d4d:N (3.0) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332250 5d4d:N (3.0) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332251 5d4d:N (3.0) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332252 5d4d:N (3.0) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332253 5d4d:N (3.0) BS05 C 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332254 5d4d:P (3.0) BS01 dna ? GO:0003677 ... Q5SKW1 27383794
    332255 5d4d:P (3.0) BS02 dna ? GO:0003677 ... Q5SKW1 27383794
    332256 5d4e:C (3.08) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332257 5d4e:C (3.08) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332258 5d4e:D (3.08) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332259 5d4e:D (3.08) BS02 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332260 5d4e:D (3.08) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332261 5d4e:D (3.08) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332262 5d4e:D (3.08) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332263 5d4e:D (3.08) BS06 C 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332264 5d4e:F (3.08) BS01 dna ? GO:0003677 ... Q5SKW1 27383794
    332265 5d4e:F (3.08) BS02 dna ? GO:0003677 ... Q5SKW1 27383794
    332266 5d4e:F (3.08) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    332267 5d4e:M (3.08) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332268 5d4e:M (3.08) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332269 5d4e:M (3.08) BS03 C 2.7.7.6 GO:0000428 ... Q8RQE9 27383794
    332270 5d4e:N (3.08) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332271 5d4e:N (3.08) BS02 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332272 5d4e:N (3.08) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332273 5d4e:N (3.08) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332274 5d4e:N (3.08) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332275 5d4e:N (3.08) BS06 C 2.7.7.6 GO:0000287 ... Q8RQE8 27383794
    332276 5d4e:P (3.08) BS01 dna ? GO:0003677 ... Q5SKW1 27383794
    332277 5d4e:P (3.08) BS02 dna ? GO:0003677 ... Q5SKW1 27383794
    332278 5d4e:P (3.08) BS03 MG ? GO:0003677 ... Q5SKW1 27383794
    332279 5d4f:A (1.72) BS01 FE ? N/A D1A230 N/A
    332280 5d4g:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    332281 5d4g:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    332282 5d4g:A (2.08) BS03 U5P 3.1.-.- GO:0003723 ... C3W5S0 26976575
    332283 5d4h:A (1.3) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332284 5d4h:A (1.3) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332285 5d4h:A (1.3) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332286 5d4h:A (1.3) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332287 5d4h:B (1.3) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332288 5d4h:B (1.3) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332289 5d4h:B (1.3) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332290 5d4h:B (1.3) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332291 5d4h:C (1.3) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332292 5d4h:C (1.3) BS02 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332293 5d4h:C (1.3) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332294 5d4h:C (1.3) BS04 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332295 5d4i:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332296 5d4i:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332297 5d4i:A (1.6) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332298 5d4i:A (1.6) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332299 5d4i:B (1.6) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332300 5d4i:B (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332301 5d4i:B (1.6) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332302 5d4i:B (1.6) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332303 5d4i:C (1.6) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332304 5d4i:C (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332305 5d4i:C (1.6) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332306 5d4i:C (1.6) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    332307 5d4j:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332308 5d4j:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332309 5d4j:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332310 5d4j:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332311 5d4j:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332312 5d4j:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    332313 5d4n:A (1.6) BS01 ADP ? GO:0000166 ... D5X329 27464895
    332314 5d4n:A (1.6) BS02 AMP ? GO:0000166 ... D5X329 27464895
    332315 5d4n:B (1.6) BS01 AMP ? GO:0000166 ... D5X329 27464895
    332316 5d4n:C (1.6) BS01 ADP ? GO:0000166 ... D5X329 27464895
    332317 5d4o:A (1.8) BS01 ADP ? GO:0000166 ... D5X329 27464895
    332318 5d4o:A (1.8) BS02 BCT ? GO:0000166 ... D5X329 27464895
    332319 5d4o:A (1.8) BS03 AMP ? GO:0000166 ... D5X329 27464895
    332320 5d4o:B (1.8) BS01 AMP ? GO:0000166 ... D5X329 27464895
    332321 5d4o:C (1.8) BS01 ADP ? GO:0000166 ... D5X329 27464895
    332322 5d4o:C (1.8) BS02 BCT ? GO:0000166 ... D5X329 27464895
    332323 5d4p:A (2.2) BS01 ADP ? GO:0000166 ... D6CQJ8 27464895
    332324 5d4p:A (2.2) BS02 BCT ? GO:0000166 ... D6CQJ8 27464895
    332325 5d4p:A (2.2) BS03 ADP ? GO:0000166 ... D6CQJ8 27464895
    332326 5d4p:A (2.2) BS04 BCT ? GO:0000166 ... D6CQJ8 27464895
    332327 5d4p:B (2.2) BS01 BCT ? GO:0000166 ... D6CQJ8 27464895
    332328 5d4p:B (2.2) BS02 ADP ? GO:0000166 ... D6CQJ8 27464895
    332329 5d4p:B (2.2) BS03 BCT ? GO:0000166 ... D6CQJ8 27464895
    332330 5d4p:B (2.2) BS04 ADP ? GO:0000166 ... D6CQJ8 27464895
    332331 5d4p:C (2.2) BS01 ADP ? GO:0000166 ... D6CQJ8 27464895
    332332 5d4p:C (2.2) BS02 BCT ? GO:0000166 ... D6CQJ8 27464895
    332333 5d4p:C (2.2) BS03 ADP ? GO:0000166 ... D6CQJ8 27464895
    332334 5d4p:C (2.2) BS04 BCT ? GO:0000166 ... D6CQJ8 27464895
    332335 5d4q:A (2.39) BS01 BMA ? N/A P01857 26850169
    332336 5d4q:A (2.39) BS02 GAL ? N/A P01857 26850169
    332337 5d4q:B (2.39) BS01 BMA ? N/A P01857 26850169
    332338 5d4q:B (2.39) BS02 GAL ? N/A P01857 26850169
    332339 5d4r:A (2.07) BS01 dna ? GO:0003700 ... P96711 26511320
    332340 5d4r:A (2.07) BS02 dna ? GO:0003700 ... P96711 26511320
    332341 5d4r:B (2.07) BS01 dna ? GO:0003700 ... P96711 26511320
    332342 5d4r:B (2.07) BS02 dna ? GO:0003700 ... P96711 26511320
    332343 5d4s:A (1.972) BS01 dna ? GO:0003700 ... P96711 26511320
    332344 5d4s:A (1.972) BS02 dna ? GO:0003700 ... P96711 26511320
    332345 5d4s:B (1.972) BS01 dna ? GO:0003700 ... P96711 26511320
    332346 5d4s:B (1.972) BS02 dna ? GO:0003700 ... P96711 26511320
    332347 5d4u:A (2.0) BS01 SAM ? N/A Q57913 27391308
    332348 5d4u:B (2.0) BS01 SAM ? N/A Q57913 27391308
    332349 5d4u:C (2.0) BS01 SAM ? N/A Q57913 27391308
    332350 5d4u:D (2.0) BS01 SAM ? N/A Q57913 27391308
    332351 5d4v:A (1.6) BS01 SAH ? N/A Q57913 27391308
    332352 5d4v:B (1.6) BS01 SAH ? N/A Q57913 27391308
    332353 5d4v:B (1.6) BS02 YGP ? N/A Q57913 27391308
    332354 5d4v:C (1.6) BS01 SAH ? N/A Q57913 27391308
    332355 5d4v:C (1.6) BS02 YGP ? N/A Q57913 27391308
    332356 5d4v:D (1.6) BS01 YGP ? N/A Q57913 27391308
    332357 5d4v:D (1.6) BS02 SAH ? N/A Q57913 27391308
    332358 5d4w:A (3.7) BS01 ADP ? GO:0005524 ... G0S4G4 27901467
    332359 5d4w:A (3.7) BS02 ADP ? GO:0005524 ... G0S4G4 27901467
    332360 5d4w:B (3.7) BS01 ADP ? GO:0005524 ... G0S4G4 27901467
    332361 5d4w:B (3.7) BS02 ADP ? GO:0005524 ... G0S4G4 27901467
    332362 5d4w:C (3.7) BS01 ADP ? GO:0005524 ... G0S4G4 27901467
    332363 5d4w:C (3.7) BS02 ADP ? GO:0005524 ... G0S4G4 27901467
    332364 5d4y:A (2.5) BS01 XYP N/A GO:0004553 ... N/A 26719223
    332365 5d4y:A (2.5) BS02 XYP N/A GO:0004553 ... N/A 26719223
    332366 5d4y:A (2.5) BS03 XYP N/A GO:0004553 ... N/A 26719223
    332367 5d4y:B (2.5) BS01 XYP N/A GO:0004553 ... N/A 26719223
    332368 5d4y:B (2.5) BS02 XYP N/A GO:0004553 ... N/A 26719223
    332369 5d51:L (1.47) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 26913499
    332370 5d51:L (1.47) BS02 MG 1.12.99.6 GO:0005515 ... P31891 26913499
    332371 5d51:S (1.47) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 26913499
    332372 5d51:S (1.47) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 26913499
    332373 5d51:S (1.47) BS03 F4S 1.12.99.6 GO:0005515 ... P31892 26913499
    332374 5d52:B (1.8) BS01 peptide ? GO:0005179 ... P01315 26894538
    332375 5d53:B (1.5) BS01 peptide ? GO:0005179 ... P01315 26894538
    332376 5d54:B (1.5) BS01 peptide ? GO:0005179 ... P01315 26894538
    332377 5d56:A (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332378 5d56:A (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332379 5d56:A (2.8) BS03 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332380 5d56:B (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332381 5d56:B (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332382 5d56:C (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332383 5d56:C (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332384 5d56:D (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332385 5d56:D (2.8) BS02 ZN 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332386 5d56:D (2.8) BS03 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332387 5d56:D (2.8) BS04 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332388 5d56:D (2.8) BS05 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332389 5d57:A (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332390 5d57:A (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332391 5d57:A (2.8) BS03 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332392 5d57:A (2.8) BS04 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332393 5d57:B (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332394 5d57:B (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332395 5d57:B (2.8) BS03 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332396 5d57:C (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332397 5d57:C (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332398 5d57:D (2.8) BS01 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332399 5d57:D (2.8) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538
    332400 5d57:D (2.8) BS03 78M 2.7.1.107 GO:0001727 ... P0ABN1 26894538

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).