SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    333401 5dat:M9 (3.15) BS02 rna ? GO:0002181 ... P0CX82 N/A
    333402 5dat:M9 (3.15) BS03 MG ? GO:0002181 ... P0CX82 N/A
    333403 5dat:M9 (3.15) BS04 OHX ? GO:0002181 ... P0CX82 N/A
    333404 5dat:N0 (3.15) BS01 rna ? GO:0002181 ... P0CX23 N/A
    333405 5dat:N0 (3.15) BS02 rna ? GO:0002181 ... P0CX23 N/A
    333406 5dat:N1 (3.15) BS01 rna ? GO:0002181 ... Q02753 N/A
    333407 5dat:N1 (3.15) BS02 rna ? GO:0002181 ... Q02753 N/A
    333408 5dat:N1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    333409 5dat:N1 (3.15) BS04 OHX ? GO:0002181 ... Q02753 N/A
    333410 5dat:N2 (3.15) BS01 rna ? GO:0002181 ... P05749 N/A
    333411 5dat:N3 (3.15) BS01 rna ? GO:0002181 ... P0CX41 N/A
    333412 5dat:N3 (3.15) BS02 rna ? GO:0002181 ... P0CX41 N/A
    333413 5dat:N4 (3.15) BS01 rna ? GO:0002181 ... P04449 N/A
    333414 5dat:N4 (3.15) BS02 rna ? GO:0002181 ... P04449 N/A
    333415 5dat:N5 (3.15) BS01 rna ? GO:0000027 ... P04456 N/A
    333416 5dat:N5 (3.15) BS02 rna ? GO:0000027 ... P04456 N/A
    333417 5dat:N5 (3.15) BS03 MG ? GO:0000027 ... P04456 N/A
    333418 5dat:N6 (3.15) BS01 rna ? GO:0002181 ... P05743 N/A
    333419 5dat:N6 (3.15) BS02 rna ? GO:0002181 ... P05743 N/A
    333420 5dat:N6 (3.15) BS03 MG ? GO:0002181 ... P05743 N/A
    333421 5dat:N7 (3.15) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    333422 5dat:N8 (3.15) BS01 rna ? GO:0002181 ... P02406 N/A
    333423 5dat:N8 (3.15) BS02 MG ? GO:0002181 ... P02406 N/A
    333424 5dat:N8 (3.15) BS03 MG ? GO:0002181 ... P02406 N/A
    333425 5dat:N9 (3.15) BS01 rna ? GO:0002181 ... P05747 N/A
    333426 5dat:N9 (3.15) BS02 OHX ? GO:0002181 ... P05747 N/A
    333427 5dat:O0 (3.15) BS01 rna ? GO:0002181 ... P14120 N/A
    333428 5dat:O1 (3.15) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    333429 5dat:O1 (3.15) BS02 OHX ? GO:0002181 ... P0C2H8 N/A
    333430 5dat:O2 (3.15) BS01 rna ? GO:0002181 ... P38061 N/A
    333431 5dat:O2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    333432 5dat:O3 (3.15) BS01 rna ? GO:0000027 ... P05744 N/A
    333433 5dat:O3 (3.15) BS02 OHX ? GO:0000027 ... P05744 N/A
    333434 5dat:O4 (3.15) BS01 rna ? GO:0002181 ... P87262 N/A
    333435 5dat:O4 (3.15) BS02 MG ? GO:0002181 ... P87262 N/A
    333436 5dat:O5 (3.15) BS01 rna ? GO:0000463 ... P0CX84 N/A
    333437 5dat:O5 (3.15) BS02 rna ? GO:0000463 ... P0CX84 N/A
    333438 5dat:O5 (3.15) BS03 MG ? GO:0000463 ... P0CX84 N/A
    333439 5dat:O6 (3.15) BS01 rna ? GO:0002181 ... P05745 N/A
    333440 5dat:O7 (3.15) BS01 rna ? GO:0000448 ... P49166 N/A
    333441 5dat:O7 (3.15) BS02 rna ? GO:0000448 ... P49166 N/A
    333442 5dat:O7 (3.15) BS03 rna ? GO:0000448 ... P49166 N/A
    333443 5dat:O7 (3.15) BS04 OHX ? GO:0000448 ... P49166 N/A
    333444 5dat:O7 (3.15) BS05 ZN ? GO:0000448 ... P49166 N/A
    333445 5dat:O7 (3.15) BS06 MG ? GO:0000448 ... P49166 N/A
    333446 5dat:O7 (3.15) BS07 OHX ? GO:0000448 ... P49166 N/A
    333447 5dat:O7 (3.15) BS08 OHX ? GO:0000448 ... P49166 N/A
    333448 5dat:O8 (3.15) BS01 rna ? GO:0002181 ... P49167 N/A
    333449 5dat:O9 (3.15) BS01 rna ? GO:0002181 ... P04650 N/A
    333450 5dat:O9 (3.15) BS02 rna ? GO:0002181 ... P04650 N/A
    333451 5dat:O9 (3.15) BS03 MG ? GO:0002181 ... P04650 N/A
    333452 5dat:Q0 (3.15) BS01 rna ? GO:0003735 ... P0CH08 N/A
    333453 5dat:Q0 (3.15) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    333454 5dat:Q0 (3.15) BS03 MG ? GO:0003735 ... P0CH08 N/A
    333455 5dat:Q2 (3.15) BS01 rna ? GO:0002181 ... P0CX27 N/A
    333456 5dat:Q2 (3.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    333457 5dat:Q2 (3.15) BS03 OHX ? GO:0002181 ... P0CX27 N/A
    333458 5dat:Q3 (3.15) BS01 rna ? GO:0002181 ... P0CX25 N/A
    333459 5dat:Q3 (3.15) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    333460 5dat:S0 (3.15) BS01 rna ? GO:0000028 ... P32905 N/A
    333461 5dat:S1 (3.15) BS01 rna ? GO:0000462 ... P33442 N/A
    333462 5dat:S2 (3.15) BS01 rna ? GO:0000054 ... P25443 N/A
    333463 5dat:S3 (3.15) BS01 rna ? GO:0000054 ... P05750 N/A
    333464 5dat:S4 (3.15) BS01 rna ? GO:0002181 ... P0CX35 N/A
    333465 5dat:S5 (3.15) BS01 rna ? GO:0000028 ... P26783 N/A
    333466 5dat:S6 (3.15) BS01 rna ? GO:0000462 ... P0CX37 N/A
    333467 5dat:S7 (3.15) BS01 rna ? GO:0002181 ... P26786 N/A
    333468 5dat:S8 (3.15) BS01 rna ? GO:0000462 ... P0CX39 N/A
    333469 5dat:S8 (3.15) BS02 rna ? GO:0000462 ... P0CX39 N/A
    333470 5dat:S8 (3.15) BS03 OHX ? GO:0000462 ... P0CX39 N/A
    333471 5dat:S9 (3.15) BS01 rna ? GO:0000462 ... O13516 N/A
    333472 5dat:S9 (3.15) BS02 OHX ? GO:0000462 ... O13516 N/A
    333473 5dat:SM (3.15) BS01 rna ? GO:0000723 ... P39015 N/A
    333474 5dat:SM (3.15) BS02 rna ? GO:0000723 ... P39015 N/A
    333475 5dat:SR (3.15) BS01 rna ? GO:0001965 ... P38011 N/A
    333476 5dat:SR (3.15) BS02 OHX ? GO:0001965 ... P38011 N/A
    333477 5dat:c0 (3.15) BS01 rna ? GO:0000054 ... Q08745 N/A
    333478 5dat:c1 (3.15) BS01 rna ? GO:0000028 ... P0CX47 N/A
    333479 5dat:c2 (3.15) BS01 rna ? GO:0003735 ... P48589 N/A
    333480 5dat:c3 (3.15) BS01 rna ? GO:0000462 ... P05756 N/A
    333481 5dat:c3 (3.15) BS02 rna ? GO:0000462 ... P05756 N/A
    333482 5dat:c3 (3.15) BS03 OHX ? GO:0000462 ... P05756 N/A
    333483 5dat:c4 (3.15) BS01 rna ? GO:0000028 ... P06367 N/A
    333484 5dat:c5 (3.15) BS01 rna ? GO:0000028 ... Q01855 N/A
    333485 5dat:c5 (3.15) BS02 OHX ? GO:0000028 ... Q01855 N/A
    333486 5dat:c6 (3.15) BS01 rna ? GO:0000462 ... P0CX51 N/A
    333487 5dat:c7 (3.15) BS01 rna ? GO:0000028 ... P02407 N/A
    333488 5dat:c8 (3.15) BS01 rna ? GO:0000054 ... P0CX55 N/A
    333489 5dat:c8 (3.15) BS02 MG ? GO:0000054 ... P0CX55 N/A
    333490 5dat:c9 (3.15) BS01 rna ? GO:0000028 ... P07280 N/A
    333491 5dat:c9 (3.15) BS02 MG ? GO:0000028 ... P07280 N/A
    333492 5dat:d0 (3.15) BS01 rna ? GO:0000462 ... P38701 N/A
    333493 5dat:d1 (3.15) BS01 rna ? GO:0000447 ... P0C0V8 N/A
    333494 5dat:d2 (3.15) BS01 rna ? GO:0003735 ... P0C0W1 N/A
    333495 5dat:d3 (3.15) BS01 rna ? GO:0000462 ... P0CX29 N/A
    333496 5dat:d4 (3.15) BS01 rna ? GO:0000462 ... P0CX31 N/A
    333497 5dat:d5 (3.15) BS01 rna ? GO:0002181 ... Q3E792 N/A
    333498 5dat:d6 (3.15) BS01 rna ? GO:0003735 ... P39939 N/A
    333499 5dat:d6 (3.15) BS02 ZN ? GO:0003735 ... P39939 N/A
    333500 5dat:d6 (3.15) BS03 MG ? GO:0003735 ... P39939 N/A
    333501 5dat:d7 (3.15) BS01 rna ? GO:0000028 ... P35997 N/A
    333502 5dat:d8 (3.15) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    333503 5dat:d9 (3.15) BS01 rna ? GO:0002181 ... P41057 N/A
    333504 5dat:d9 (3.15) BS02 ZN ? GO:0002181 ... P41057 N/A
    333505 5dat:e0 (3.15) BS01 rna ? GO:0002181 ... P0CX33 N/A
    333506 5dat:e1 (3.15) BS01 rna ? GO:0003735 ... P05759 N/A
    333507 5dat:f (3.15) BS01 rna ? GO:0002182 ... P23301 N/A
    333508 5dat:l1 (3.15) BS01 rna N/A N/A N/A N/A
    333509 5dat:l2 (3.15) BS01 rna ? GO:0002181 ... P0CX45 N/A
    333510 5dat:l2 (3.15) BS02 rna ? GO:0002181 ... P0CX45 N/A
    333511 5dat:l2 (3.15) BS03 MG ? GO:0002181 ... P0CX45 N/A
    333512 5dat:l2 (3.15) BS04 MG ? GO:0002181 ... P0CX45 N/A
    333513 5dat:l2 (3.15) BS05 MG ? GO:0002181 ... P0CX45 N/A
    333514 5dat:l3 (3.15) BS01 rna ? GO:0000027 ... P14126 N/A
    333515 5dat:l3 (3.15) BS02 MG ? GO:0000027 ... P14126 N/A
    333516 5dat:l3 (3.15) BS03 OHX ? GO:0000027 ... P14126 N/A
    333517 5dat:l3 (3.15) BS04 OHX ? GO:0000027 ... P14126 N/A
    333518 5dat:l4 (3.15) BS01 rna ? GO:0002181 ... P10664 N/A
    333519 5dat:l4 (3.15) BS02 rna ? GO:0002181 ... P10664 N/A
    333520 5dat:l4 (3.15) BS03 OHX ? GO:0002181 ... P10664 N/A
    333521 5dat:l5 (3.15) BS01 rna ? GO:0000027 ... P26321 N/A
    333522 5dat:l5 (3.15) BS02 rna ? GO:0000027 ... P26321 N/A
    333523 5dat:l5 (3.15) BS03 MG ? GO:0000027 ... P26321 N/A
    333524 5dat:l5 (3.15) BS04 OHX ? GO:0000027 ... P26321 N/A
    333525 5dat:l5 (3.15) BS05 OHX ? GO:0000027 ... P26321 N/A
    333526 5dat:l6 (3.15) BS01 rna ? GO:0000027 ... Q02326 N/A
    333527 5dat:l7 (3.15) BS01 rna ? GO:0000463 ... P05737 N/A
    333528 5dat:l7 (3.15) BS02 rna ? GO:0000463 ... P05737 N/A
    333529 5dat:l7 (3.15) BS03 OHX ? GO:0000463 ... P05737 N/A
    333530 5dat:l8 (3.15) BS01 rna ? GO:0000470 ... P17076 N/A
    333531 5dat:l8 (3.15) BS02 rna ? GO:0000470 ... P17076 N/A
    333532 5dat:l9 (3.15) BS01 rna ? GO:0002181 ... P05738 N/A
    333533 5dat:m0 (3.15) BS01 rna ? GO:0000027 ... P41805 N/A
    333534 5dat:m0 (3.15) BS02 rna ? GO:0000027 ... P41805 N/A
    333535 5dat:m0 (3.15) BS03 MG ? GO:0000027 ... P41805 N/A
    333536 5dat:m0 (3.15) BS04 OHX ? GO:0000027 ... P41805 N/A
    333537 5dat:m0 (3.15) BS05 OHX ? GO:0000027 ... P41805 N/A
    333538 5dat:m0 (3.15) BS06 OHX ? GO:0000027 ... P41805 N/A
    333539 5dat:m1 (3.15) BS01 rna ? GO:0000027 ... Q3E757 N/A
    333540 5dat:m1 (3.15) BS02 rna ? GO:0000027 ... Q3E757 N/A
    333541 5dat:m2 (3.15) BS01 rna N/A N/A N/A N/A
    333542 5dat:m3 (3.15) BS01 rna ? GO:0002181 ... Q12690 N/A
    333543 5dat:m3 (3.15) BS02 rna ? GO:0002181 ... Q12690 N/A
    333544 5dat:m4 (3.15) BS01 rna ? GO:0000027 ... P36105 N/A
    333545 5dat:m5 (3.15) BS01 rna ? GO:0002181 ... P05748 N/A
    333546 5dat:m5 (3.15) BS02 rna ? GO:0002181 ... P05748 N/A
    333547 5dat:m5 (3.15) BS03 OHX ? GO:0002181 ... P05748 N/A
    333548 5dat:m5 (3.15) BS04 MG ? GO:0002181 ... P05748 N/A
    333549 5dat:m6 (3.15) BS01 rna ? GO:0000470 ... P26784 N/A
    333550 5dat:m6 (3.15) BS02 MG ? GO:0000470 ... P26784 N/A
    333551 5dat:m7 (3.15) BS01 rna ? GO:0000448 ... P05740 N/A
    333552 5dat:m7 (3.15) BS02 rna ? GO:0000448 ... P05740 N/A
    333553 5dat:m7 (3.15) BS03 MG ? GO:0000448 ... P05740 N/A
    333554 5dat:m8 (3.15) BS01 rna ? GO:0002181 ... P0CX49 N/A
    333555 5dat:m9 (3.15) BS01 rna ? GO:0002181 ... P0CX82 N/A
    333556 5dat:m9 (3.15) BS02 rna ? GO:0002181 ... P0CX82 N/A
    333557 5dat:n0 (3.15) BS01 rna ? GO:0002181 ... P0CX23 N/A
    333558 5dat:n0 (3.15) BS02 rna ? GO:0002181 ... P0CX23 N/A
    333559 5dat:n1 (3.15) BS01 rna ? GO:0002181 ... Q02753 N/A
    333560 5dat:n1 (3.15) BS02 rna ? GO:0002181 ... Q02753 N/A
    333561 5dat:n1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    333562 5dat:n1 (3.15) BS04 OHX ? GO:0002181 ... Q02753 N/A
    333563 5dat:n2 (3.15) BS01 rna ? GO:0002181 ... P05749 N/A
    333564 5dat:n3 (3.15) BS01 rna ? GO:0002181 ... P0CX41 N/A
    333565 5dat:n3 (3.15) BS02 rna ? GO:0002181 ... P0CX41 N/A
    333566 5dat:n4 (3.15) BS01 rna ? GO:0002181 ... P04449 N/A
    333567 5dat:n4 (3.15) BS02 rna ? GO:0002181 ... P04449 N/A
    333568 5dat:n5 (3.15) BS01 rna ? GO:0000027 ... P04456 N/A
    333569 5dat:n5 (3.15) BS02 rna ? GO:0000027 ... P04456 N/A
    333570 5dat:n6 (3.15) BS01 rna ? GO:0002181 ... P05743 N/A
    333571 5dat:n6 (3.15) BS02 rna ? GO:0002181 ... P05743 N/A
    333572 5dat:n7 (3.15) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    333573 5dat:n8 (3.15) BS01 rna ? GO:0002181 ... P02406 N/A
    333574 5dat:n9 (3.15) BS01 rna ? GO:0002181 ... P05747 N/A
    333575 5dat:n9 (3.15) BS02 OHX ? GO:0002181 ... P05747 N/A
    333576 5dat:o0 (3.15) BS01 rna ? GO:0002181 ... P14120 N/A
    333577 5dat:o1 (3.15) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    333578 5dat:o2 (3.15) BS01 rna ? GO:0002181 ... P38061 N/A
    333579 5dat:o2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    333580 5dat:o3 (3.15) BS01 rna ? GO:0000027 ... P05744 N/A
    333581 5dat:o3 (3.15) BS02 MG ? GO:0000027 ... P05744 N/A
    333582 5dat:o3 (3.15) BS03 OHX ? GO:0000027 ... P05744 N/A
    333583 5dat:o4 (3.15) BS01 rna ? GO:0002181 ... P87262 N/A
    333584 5dat:o5 (3.15) BS01 rna ? GO:0000463 ... P0CX84 N/A
    333585 5dat:o5 (3.15) BS02 rna ? GO:0000463 ... P0CX84 N/A
    333586 5dat:o6 (3.15) BS01 rna ? GO:0002181 ... P05745 N/A
    333587 5dat:o7 (3.15) BS01 rna ? GO:0000448 ... P49166 N/A
    333588 5dat:o7 (3.15) BS02 rna ? GO:0000448 ... P49166 N/A
    333589 5dat:o7 (3.15) BS03 ZN ? GO:0000448 ... P49166 N/A
    333590 5dat:o7 (3.15) BS04 OHX ? GO:0000448 ... P49166 N/A
    333591 5dat:o8 (3.15) BS01 rna ? GO:0002181 ... P49167 N/A
    333592 5dat:o9 (3.15) BS01 rna ? GO:0002181 ... P04650 N/A
    333593 5dat:o9 (3.15) BS02 rna ? GO:0002181 ... P04650 N/A
    333594 5dat:o9 (3.15) BS03 OHX ? GO:0002181 ... P04650 N/A
    333595 5dat:p0 (3.15) BS01 rna ? N/A P05317 N/A
    333596 5dat:q0 (3.15) BS01 rna ? GO:0003735 ... P0CH08 N/A
    333597 5dat:q0 (3.15) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    333598 5dat:q2 (3.15) BS01 rna ? GO:0002181 ... P0CX27 N/A
    333599 5dat:q2 (3.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    333600 5dat:q2 (3.15) BS03 OHX ? GO:0002181 ... P0CX27 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).