SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    333601 5dat:q3 (3.15) BS01 rna ? GO:0002181 ... P0CX25 N/A
    333602 5dat:q3 (3.15) BS02 rna ? GO:0002181 ... P0CX25 N/A
    333603 5dat:q3 (3.15) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    333604 5dat:s0 (3.15) BS01 rna ? GO:0000028 ... P32905 N/A
    333605 5dat:s1 (3.15) BS01 rna ? GO:0000462 ... P33442 N/A
    333606 5dat:s1 (3.15) BS02 rna ? GO:0000462 ... P33442 N/A
    333607 5dat:s1 (3.15) BS03 OHX ? GO:0000462 ... P33442 N/A
    333608 5dat:s2 (3.15) BS01 rna ? GO:0000054 ... P25443 N/A
    333609 5dat:s3 (3.15) BS01 rna ? GO:0000054 ... P05750 N/A
    333610 5dat:s4 (3.15) BS01 rna ? GO:0002181 ... P0CX35 N/A
    333611 5dat:s4 (3.15) BS02 MG ? GO:0002181 ... P0CX35 N/A
    333612 5dat:s5 (3.15) BS01 rna ? GO:0000028 ... P26783 N/A
    333613 5dat:s5 (3.15) BS02 MG ? GO:0000028 ... P26783 N/A
    333614 5dat:s6 (3.15) BS01 rna ? GO:0000462 ... P0CX37 N/A
    333615 5dat:s7 (3.15) BS01 rna ? GO:0002181 ... P26786 N/A
    333616 5dat:s8 (3.15) BS01 rna ? GO:0000462 ... P0CX39 N/A
    333617 5dat:s8 (3.15) BS02 rna ? GO:0000462 ... P0CX39 N/A
    333618 5dat:s8 (3.15) BS03 OHX ? GO:0000462 ... P0CX39 N/A
    333619 5dat:s9 (3.15) BS01 rna ? GO:0000462 ... O13516 N/A
    333620 5dat:s9 (3.15) BS02 OHX ? GO:0000462 ... O13516 N/A
    333621 5dat:sM (3.15) BS01 rna ? GO:0000723 ... P39015 N/A
    333622 5dat:sM (3.15) BS02 rna ? GO:0000723 ... P39015 N/A
    333623 5dat:sM (3.15) BS03 MG ? GO:0000723 ... P39015 N/A
    333624 5dat:sR (3.15) BS01 rna ? GO:0001965 ... P38011 N/A
    333625 5dat:sR (3.15) BS02 OHX ? GO:0001965 ... P38011 N/A
    333626 5dau:A (1.5) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    333627 5dau:A (1.5) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    333628 5dav:A (1.8) BS01 58J 1.14.11.81 N/A Q5AR53 26553478
    333629 5daw:A (1.6) BS01 AKG 1.14.11.81 N/A Q5AR53 26553478
    333630 5daw:A (1.6) BS02 58K 1.14.11.81 N/A Q5AR53 26553478
    333631 5dax:A (1.7) BS01 AKG 1.14.11.81 N/A Q5AR53 26553478
    333632 5dax:A (1.7) BS02 58L 1.14.11.81 N/A Q5AR53 26553478
    333633 5db0:A (1.5) BS01 58P ? GO:0005634 ... O00255 26744767 MOAD: ic50=46nM
    333634 5db0:A (1.5) BS02 6E6 ? GO:0005634 ... O00255 26744767 MOAD: ic50=42nM
    333635 5db1:A (1.86) BS01 58O ? GO:0005634 ... O00255 26744767 MOAD: ic50=22nM
    333636 5db2:A (1.54) BS01 58R ? GO:0005634 ... O00255 26744767 MOAD: ic50=25nM
    333637 5db3:A (1.71) BS01 58Q ? GO:0005634 ... O00255 26744767 MOAD: ic50=12nM
    333638 5db4:A (2.28) BS01 ATP 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    333639 5db4:B (2.28) BS01 ATP 2.7.7.18 GO:0003824 ... B1MMZ4 N/A
    333640 5db5:A (2.75) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 N/A
    333641 5db5:A (2.75) BS02 CYS 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 N/A
    333642 5db5:A (2.75) BS03 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 N/A
    333643 5db5:B (2.75) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 N/A
    333644 5db5:B (2.75) BS02 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 N/A
    333645 5db6:A (2.83) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333646 5db6:A (2.83) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333647 5db6:A (2.83) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333648 5db7:A (2.209) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333649 5db7:A (2.209) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333650 5db7:A (2.209) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333651 5db8:A (2.547) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333652 5db8:A (2.547) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333653 5db8:A (2.547) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333654 5db9:A (2.45) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333655 5db9:A (2.45) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333656 5db9:A (2.45) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333657 5dba:A (1.965) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333658 5dba:A (1.965) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333659 5dba:A (1.965) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333660 5dbb:A (2.25) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333661 5dbb:A (2.25) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333662 5dbb:A (2.25) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333663 5dbc:A (2.402) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333664 5dbc:A (2.402) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333665 5dbc:A (2.402) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 26517568
    333666 5dbe:X (2.25) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    333667 5dbe:X (2.25) BS02 OAS 2.5.1.47 GO:0004124 ... P45040 N/A
    333668 5dbe:X (2.25) BS03 0JO 2.5.1.47 GO:0004124 ... P45040 N/A
    333669 5dbf:A (2.0) BS01 NDP 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333670 5dbf:B (2.0) BS01 NDP 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333671 5dbg:A (1.95) BS01 NAD 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333672 5dbg:B (1.95) BS01 NAD 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333673 5dbh:X (1.98) BS01 0JO 2.5.1.47 GO:0004124 ... P45040 N/A
    333674 5dbi:A (2.2) BS01 NAD 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333675 5dbi:A (2.2) BS02 XOG 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333676 5dbi:B (2.2) BS01 NAD 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333677 5dbi:B (2.2) BS02 XOG 1.3.1.122 GO:0005737 ... K7WDL7 26768532
    333678 5dbj:A (2.75) BS01 FAD 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333679 5dbj:A (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333680 5dbj:A (2.75) BS03 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333681 5dbj:B (2.75) BS01 FAD 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333682 5dbj:B (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333683 5dbj:B (2.75) BS03 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333684 5dbj:C (2.75) BS01 FAD 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333685 5dbj:C (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333686 5dbj:C (2.75) BS03 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333687 5dbj:D (2.75) BS01 FAD 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333688 5dbj:E (2.75) BS01 FAD 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333689 5dbj:E (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    333690 5dbm:A (1.86) BS01 58N 2.3.1.-
    2.3.1.48
    N/A Q92793 27056325 MOAD: Kd=0.35uM
    BindingDB: IC50=456nM
    333691 5dbm:B (1.86) BS01 58N 2.3.1.-
    2.3.1.48
    N/A Q92793 27056325 MOAD: Kd=0.35uM
    BindingDB: IC50=456nM
    333692 5dbm:C (1.86) BS01 58N 2.3.1.-
    2.3.1.48
    N/A Q92793 27056325 MOAD: Kd=0.35uM
    BindingDB: IC50=456nM
    333693 5dbr:A (2.25) BS01 peptide ? GO:0000086 ... P0DP23 N/A
    333694 5dbr:A (2.25) BS02 CA ? GO:0000086 ... P0DP23 N/A
    333695 5dbr:A (2.25) BS03 CA ? GO:0000086 ... P0DP23 N/A
    333696 5dbr:A (2.25) BS04 CA ? GO:0000086 ... P0DP23 N/A
    333697 5dbr:A (2.25) BS05 CA ? GO:0000086 ... P0DP23 N/A
    333698 5dbs:A (2.11) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 26976575
    333699 5dbs:A (2.11) BS02 TMP 3.1.-.- GO:0003723 ... C3W5S0 26976575
    333700 5dbv:A (1.77) BS01 COA ? GO:0000166 ... A9KN57 26899032
    333701 5dbx:A (2.5) BS01 ANP 2.7.11.1 GO:0004672 ... Q9Z1W9 26208601
    333702 5dbx:B (2.5) BS01 ANP 2.7.11.1 GO:0004672 ... Q9Z1W9 26208601
    333703 5dby:A (2.35) BS01 DIF ? GO:0003677 ... P35747 26652101 MOAD: Ka=39000M^-1
    333704 5dby:A (2.35) BS02 NPS ? GO:0003677 ... P35747 26652101 MOAD: Ka=7730000M^-1
    333705 5dc2:A (2.182) BS01 58U 2.3.2.- GO:0005886 ... I6Y9J2 28545389
    333706 5dc2:B (2.182) BS01 58U 2.3.2.- GO:0005886 ... I6Y9J2 28545389
    333707 5dc3:C0 (3.25) BS01 rna ? GO:0000054 ... Q08745 27196944
    333708 5dc3:C1 (3.25) BS01 rna ? GO:0000028 ... P0CX47 27196944
    333709 5dc3:C2 (3.25) BS01 rna ? GO:0000028 ... P48589 27196944
    333710 5dc3:C3 (3.25) BS01 rna ? GO:0000462 ... P05756 27196944
    333711 5dc3:C3 (3.25) BS02 rna ? GO:0000462 ... P05756 27196944
    333712 5dc3:C4 (3.25) BS01 rna ? GO:0000028 ... P06367 27196944
    333713 5dc3:C5 (3.25) BS01 rna ? GO:0000028 ... Q01855 27196944
    333714 5dc3:C5 (3.25) BS02 rna ? GO:0000028 ... Q01855 27196944
    333715 5dc3:C6 (3.25) BS01 rna ? GO:0000462 ... P0CX51 27196944
    333716 5dc3:C7 (3.25) BS01 rna ? GO:0000028 ... P02407 27196944
    333717 5dc3:C8 (3.25) BS01 rna ? GO:0000054 ... P0CX55 27196944
    333718 5dc3:C9 (3.25) BS01 rna ? GO:0000028 ... P07280 27196944
    333719 5dc3:D0 (3.25) BS01 rna ? GO:0000462 ... P38701 27196944
    333720 5dc3:D2 (3.25) BS01 rna ? GO:0002181 ... P0C0W1 27196944
    333721 5dc3:D3 (3.25) BS01 rna ? GO:0000462 ... P0CX29 27196944
    333722 5dc3:D4 (3.25) BS01 rna ? GO:0000462 ... P0CX31 27196944
    333723 5dc3:D5 (3.25) BS01 rna ? GO:0002181 ... Q3E792 27196944
    333724 5dc3:D6 (3.25) BS01 rna ? GO:0003735 ... P39939 27196944
    333725 5dc3:D6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27196944
    333726 5dc3:D7 (3.25) BS01 rna ? GO:0000028 ... P35997 27196944
    333727 5dc3:D8 (3.25) BS01 rna ? GO:0000028 ... Q3E7X9 27196944
    333728 5dc3:D9 (3.25) BS01 rna ? GO:0002181 ... P41057 27196944
    333729 5dc3:D9 (3.25) BS02 ZN ? GO:0002181 ... P41057 27196944
    333730 5dc3:E0 (3.25) BS01 rna ? GO:0002181 ... P0CX33 27196944
    333731 5dc3:E1 (3.25) BS01 rna ? GO:0003735 ... P05759 27196944
    333732 5dc3:E1 (3.25) BS02 ZN ? GO:0003735 ... P05759 27196944
    333733 5dc3:L2 (3.25) BS01 rna ? GO:0002181 ... P0CX45 27196944
    333734 5dc3:L2 (3.25) BS02 rna ? GO:0002181 ... P0CX45 27196944
    333735 5dc3:L3 (3.25) BS01 rna ? GO:0000027 ... P14126 27196944
    333736 5dc3:L4 (3.25) BS01 rna ? GO:0002181 ... P10664 27196944
    333737 5dc3:L4 (3.25) BS02 rna ? GO:0002181 ... P10664 27196944
    333738 5dc3:L5 (3.25) BS01 rna ? GO:0000027 ... P26321 27196944
    333739 5dc3:L5 (3.25) BS02 rna ? GO:0000027 ... P26321 27196944
    333740 5dc3:L6 (3.25) BS01 rna ? GO:0000027 ... Q02326 27196944
    333741 5dc3:L7 (3.25) BS01 rna ? GO:0000463 ... P05737 27196944
    333742 5dc3:L7 (3.25) BS02 rna ? GO:0000463 ... P05737 27196944
    333743 5dc3:L8 (3.25) BS01 rna ? GO:0000470 ... P17076 27196944
    333744 5dc3:L8 (3.25) BS02 rna ? GO:0000470 ... P17076 27196944
    333745 5dc3:L9 (3.25) BS01 rna ? GO:0002181 ... P05738 27196944
    333746 5dc3:M0 (3.25) BS01 rna ? GO:0000027 ... P41805 27196944
    333747 5dc3:M0 (3.25) BS02 rna ? GO:0000027 ... P41805 27196944
    333748 5dc3:M1 (3.25) BS01 rna ? GO:0000027 ... Q3E757 27196944
    333749 5dc3:M1 (3.25) BS02 rna ? GO:0000027 ... Q3E757 27196944
    333750 5dc3:M3 (3.25) BS01 rna ? GO:0002181 ... Q12690 27196944
    333751 5dc3:M3 (3.25) BS02 rna ? GO:0002181 ... Q12690 27196944
    333752 5dc3:M4 (3.25) BS01 rna ? GO:0000027 ... P36105 27196944
    333753 5dc3:M5 (3.25) BS01 rna ? GO:0002181 ... P05748 27196944
    333754 5dc3:M5 (3.25) BS02 rna ? GO:0002181 ... P05748 27196944
    333755 5dc3:M6 (3.25) BS01 rna ? GO:0000470 ... P26784 27196944
    333756 5dc3:M7 (3.25) BS01 rna ? GO:0000448 ... P05740 27196944
    333757 5dc3:M7 (3.25) BS02 rna ? GO:0000448 ... P05740 27196944
    333758 5dc3:M8 (3.25) BS01 rna ? GO:0002181 ... P0CX49 27196944
    333759 5dc3:M9 (3.25) BS01 rna ? GO:0002181 ... P0CX82 27196944
    333760 5dc3:M9 (3.25) BS02 rna ? GO:0002181 ... P0CX82 27196944
    333761 5dc3:N0 (3.25) BS01 rna ? GO:0002181 ... P0CX23 27196944
    333762 5dc3:N0 (3.25) BS02 rna ? GO:0002181 ... P0CX23 27196944
    333763 5dc3:N1 (3.25) BS01 rna ? GO:0002181 ... Q02753 27196944
    333764 5dc3:N1 (3.25) BS02 rna ? GO:0002181 ... Q02753 27196944
    333765 5dc3:N2 (3.25) BS01 rna ? GO:0002181 ... P05749 27196944
    333766 5dc3:N3 (3.25) BS01 rna ? GO:0002181 ... P0CX41 27196944
    333767 5dc3:N3 (3.25) BS02 rna ? GO:0002181 ... P0CX41 27196944
    333768 5dc3:N4 (3.25) BS01 rna ? GO:0002181 ... P04449 27196944
    333769 5dc3:N4 (3.25) BS02 rna ? GO:0002181 ... P04449 27196944
    333770 5dc3:N5 (3.25) BS01 rna ? GO:0000027 ... P04456 27196944
    333771 5dc3:N5 (3.25) BS02 rna ? GO:0000027 ... P04456 27196944
    333772 5dc3:N6 (3.25) BS01 rna ? GO:0002181 ... P05743 27196944
    333773 5dc3:N6 (3.25) BS02 rna ? GO:0002181 ... P05743 27196944
    333774 5dc3:N7 (3.25) BS01 rna ? GO:0002181 ... P0C2H6 27196944
    333775 5dc3:N8 (3.25) BS01 rna ? GO:0002181 ... P02406 27196944
    333776 5dc3:N9 (3.25) BS01 rna ? GO:0002181 ... P05747 27196944
    333777 5dc3:O0 (3.25) BS01 rna ? GO:0002181 ... P14120 27196944
    333778 5dc3:O1 (3.25) BS01 rna ? GO:0002181 ... P0C2H8 27196944
    333779 5dc3:O2 (3.25) BS01 rna ? GO:0002181 ... P38061 27196944
    333780 5dc3:O3 (3.25) BS01 rna ? GO:0000027 ... P05744 27196944
    333781 5dc3:O4 (3.25) BS01 rna ? GO:0002181 ... P87262 27196944
    333782 5dc3:O5 (3.25) BS01 rna ? GO:0000463 ... P0CX84 27196944
    333783 5dc3:O5 (3.25) BS02 rna ? GO:0000463 ... P0CX84 27196944
    333784 5dc3:O6 (3.25) BS01 rna ? GO:0002181 ... P05745 27196944
    333785 5dc3:O7 (3.25) BS01 rna ? GO:0000448 ... P49166 27196944
    333786 5dc3:O7 (3.25) BS02 rna ? GO:0000448 ... P49166 27196944
    333787 5dc3:O7 (3.25) BS03 ZN ? GO:0000448 ... P49166 27196944
    333788 5dc3:O8 (3.25) BS01 rna ? GO:0002181 ... P49167 27196944
    333789 5dc3:O9 (3.25) BS01 rna ? GO:0002181 ... P04650 27196944
    333790 5dc3:O9 (3.25) BS02 rna ? GO:0002181 ... P04650 27196944
    333791 5dc3:Q0 (3.25) BS01 rna ? GO:0003735 ... P0CH08 27196944
    333792 5dc3:Q0 (3.25) BS02 ZN ? GO:0003735 ... P0CH08 27196944
    333793 5dc3:Q2 (3.25) BS01 rna ? GO:0002181 ... P0CX27 27196944
    333794 5dc3:Q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27196944
    333795 5dc3:Q3 (3.25) BS01 rna ? GO:0002181 ... P0CX25 27196944
    333796 5dc3:Q3 (3.25) BS02 ZN ? GO:0002181 ... P0CX25 27196944
    333797 5dc3:S0 (3.25) BS01 rna ? GO:0000028 ... P32905 27196944
    333798 5dc3:S1 (3.25) BS01 rna ? GO:0000462 ... P33442 27196944
    333799 5dc3:S2 (3.25) BS01 rna ? GO:0000054 ... P25443 27196944
    333800 5dc3:S3 (3.25) BS01 rna ? GO:0000054 ... P05750 27196944

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).