SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33201 1mhd:A (2.8) BS02 dna ? GO:0005667 ... P84022 9741623
    33202 1mhd:B (2.8) BS01 dna ? GO:0005667 ... P84022 9741623
    33203 1mhd:B (2.8) BS02 dna ? GO:0005667 ... P84022 9741623
    33204 1mhe:A (2.85) BS01 peptide ? N/A P13747 9660937
    33205 1mhe:C (2.85) BS01 peptide ? N/A P13747 9660937
    33206 1mhe:C (2.85) BS02 peptide ? N/A P13747 9660937
    33207 1mhi:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 1433291
    33208 1mhl:A (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    33209 1mhl:B (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    33210 1mhl:C (2.25) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    33211 1mhl:C (2.25) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    33212 1mhl:C (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    33213 1mhl:C (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    33214 1mhl:D (2.25) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    33215 1mhl:D (2.25) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    33216 1mhl:D (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    33217 1mhl:D (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    33218 1mho:A (2.0) BS01 CA ? GO:0001726 ... P02638 9519413
    33219 1mho:A (2.0) BS02 CA ? GO:0001726 ... P02638 9519413
    33220 1mhp:A (2.8) BS01 MN ? N/A P18614 12662928
    33221 1mhp:B (2.8) BS01 MN ? N/A P18614 12662928
    33222 1mht:A (2.6) BS01 dna 2.1.1.37 GO:0003886 ... P05102 8293469
    33223 1mht:A (2.6) BS02 dna 2.1.1.37 GO:0003886 ... P05102 8293469
    33224 1mht:A (2.6) BS03 SAH 2.1.1.37 GO:0003886 ... P05102 8293469
    33225 1mhw:A (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33226 1mhw:A (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33227 1mhw:A (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33228 1mhw:B (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33229 1mhw:B (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33230 1mhw:B (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33231 1mhw:C (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33232 1mhw:D (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    33233 1mhy:D (2.0) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    33234 1mhy:D (2.0) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    33235 1mhz:D (2.7) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    33236 1mhz:D (2.7) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    33237 1mi3:A (1.8) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 12733986
    33238 1mi3:B (1.8) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 12733986
    33239 1mi3:C (1.8) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 12733986
    33240 1mi3:D (1.8) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 12733986
    33241 1mi4:A (1.7) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 12430021 BindingDB: Kd=7000nM
    33242 1mi5:A (2.5) BS01 peptide ? N/A P01889 12530975
    33243 1mi5:E (2.5) BS01 peptide ? N/A P01850 12530975
    33244 1mid:A (1.71) BS01 LAP ? GO:0006869 ... P07597 N/A
    33245 1mid:A (1.71) BS02 LAP ? GO:0006869 ... P07597 N/A
    33246 1mid:A (1.71) BS03 LAP ? GO:0006869 ... P07597 N/A
    33247 1mih:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    33248 1mih:A (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    33249 1mih:B (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    33250 1mih:B (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    33251 1mik:A (1.76) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 7650689
    33252 1mio:A (3.0) BS01 CFM 1.18.6.1 GO:0009399 ... P00467 8393705
    33253 1mio:A (3.0) BS02 CLP 1.18.6.1 GO:0009399 ... P00467 8393705
    33254 1mio:B (3.0) BS01 CA 1.18.6.1 GO:0009399 ... P11347 8393705
    33255 1mio:B (3.0) BS02 CLP 1.18.6.1 GO:0009399 ... P11347 8393705
    33256 1mio:B (3.0) BS03 CA 1.18.6.1 GO:0009399 ... P11347 8393705
    33257 1mio:C (3.0) BS01 CFM 1.18.6.1 GO:0009399 ... P00467 8393705
    33258 1mio:C (3.0) BS02 CLP 1.18.6.1 GO:0009399 ... P00467 8393705
    33259 1mio:D (3.0) BS01 CA 1.18.6.1 GO:0009399 ... P11347 8393705
    33260 1mio:D (3.0) BS02 CA 1.18.6.1 GO:0009399 ... P11347 8393705
    33261 1mio:D (3.0) BS03 CLP 1.18.6.1 GO:0009399 ... P11347 8393705
    33262 1miw:A (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    33263 1miw:B (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    33264 1miy:A (3.52) BS01 MG 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    33265 1miy:A (3.52) BS02 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    33266 1miy:B (3.52) BS01 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    33267 1mj1:A (13.0) BS01 rna ? GO:0003746 ... P0CE47 12379845
    33268 1mj1:O (13.0) BS01 rna ? GO:0000049 ... Q5SHN3 12379845
    33269 1mj2:A (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33270 1mj2:A (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33271 1mj2:A (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33272 1mj2:A (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33273 1mj2:B (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33274 1mj2:B (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33275 1mj2:B (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33276 1mj2:B (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33277 1mj2:B (2.4) BS05 CA ? GO:0003700 ... P0A8U6 10986458
    33278 1mj2:C (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33279 1mj2:C (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33280 1mj2:C (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33281 1mj2:C (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33282 1mj2:D (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33283 1mj2:D (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33284 1mj2:D (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33285 1mj2:D (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33286 1mj3:A (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33287 1mj3:B (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33288 1mj3:B (2.1) BS02 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33289 1mj3:C (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33290 1mj3:C (2.1) BS02 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33291 1mj3:E (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33292 1mj3:F (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33293 1mj3:F (2.1) BS02 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    33294 1mj4:A (1.2) BS01 HEM 1.8.3.1 GO:0020037 ... P51687 12832761
    33295 1mj7:H (2.25) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=4.5nM
    33296 1mj7:L (2.25) BS01 HAL N/A N/A N/A 12948492
    33297 1mj9:A (2.5) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 12368900
    33298 1mja:A (2.26) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 12368900
    33299 1mjb:A (2.5) BS01 ACO 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 12368900
    33300 1mje:A (3.5) BS01 dna ? GO:0000724 ... P97929 12228710
    33301 1mjg:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33302 1mjg:A (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33303 1mjg:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    33304 1mjg:B (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33305 1mjg:B (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33306 1mjg:B (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    33307 1mjg:C (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33308 1mjg:C (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33309 1mjg:C (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    33310 1mjg:D (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33311 1mjg:D (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    33312 1mjg:D (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    33313 1mjg:M (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    33314 1mjg:M (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    33315 1mjg:N (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    33316 1mjg:N (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    33317 1mjg:O (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    33318 1mjg:O (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    33319 1mjg:P (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    33320 1mjg:P (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    33321 1mjh:A (1.7) BS01 ATP ? GO:0005737 ... Q57997 9860944
    33322 1mjh:B (1.7) BS01 ATP ? GO:0005737 ... Q57997 9860944
    33323 1mji:A (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    33324 1mji:A (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    33325 1mji:A (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    33326 1mji:B (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    33327 1mji:B (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    33328 1mji:B (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    33329 1mjj:A (2.1) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=1.83nM
    33330 1mjj:B (2.1) BS01 HAL N/A N/A N/A 12948492
    33331 1mjj:H (2.1) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=1.83nM
    33332 1mjj:L (2.1) BS01 HAL N/A N/A N/A 12948492
    33333 1mjl:A (2.1) BS01 SAM ? GO:0003700 ... P0A8U6 N/A
    33334 1mjl:A (2.1) BS02 SAM ? GO:0003700 ... P0A8U6 N/A
    33335 1mjl:B (2.1) BS01 SAM ? GO:0003700 ... P0A8U6 N/A
    33336 1mjl:B (2.1) BS02 SAM ? GO:0003700 ... P0A8U6 N/A
    33337 1mjm:A (2.2) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33338 1mjm:A (2.2) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33339 1mjm:B (2.2) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33340 1mjm:B (2.2) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33341 1mjn:A (1.3) BS01 MG ? N/A P20701 12526797
    33342 1mjo:A (2.1) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33343 1mjo:A (2.1) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33344 1mjo:A (2.1) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33345 1mjo:A (2.1) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33346 1mjo:B (2.1) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33347 1mjo:B (2.1) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33348 1mjo:B (2.1) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33349 1mjo:B (2.1) BS04 CA ? GO:0003700 ... P0A8U6 10986458
    33350 1mjo:B (2.1) BS05 SAM ? GO:0003700 ... P0A8U6 10986458
    33351 1mjo:C (2.1) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33352 1mjo:C (2.1) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33353 1mjo:C (2.1) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33354 1mjo:C (2.1) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33355 1mjo:D (2.1) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33356 1mjo:D (2.1) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33357 1mjo:D (2.1) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33358 1mjo:D (2.1) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33359 1mjp:A (3.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33360 1mjp:B (3.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33361 1mjp:B (3.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33362 1mjq:A (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33363 1mjq:A (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33364 1mjq:A (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33365 1mjq:A (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33366 1mjq:B (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33367 1mjq:B (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33368 1mjq:B (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33369 1mjq:C (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33370 1mjq:C (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33371 1mjq:C (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33372 1mjq:C (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33373 1mjq:D (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33374 1mjq:D (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33375 1mjq:D (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33376 1mjq:G (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33377 1mjq:G (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33378 1mjq:G (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33379 1mjq:G (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33380 1mjq:H (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33381 1mjq:H (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33382 1mjq:H (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33383 1mjq:H (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33384 1mjq:I (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33385 1mjq:I (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33386 1mjq:I (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33387 1mjq:I (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33388 1mjq:J (2.4) BS01 dna ? GO:0003700 ... P0A8U6 10986458
    33389 1mjq:J (2.4) BS02 dna ? GO:0003700 ... P0A8U6 10986458
    33390 1mjq:J (2.4) BS03 SAM ? GO:0003700 ... P0A8U6 10986458
    33391 1mjq:J (2.4) BS04 SAM ? GO:0003700 ... P0A8U6 10986458
    33392 1mjt:A (2.4) BS01 GLC 1.14.14.47 GO:0004517 ... P0A004 12467576
    33393 1mjt:A (2.4) BS02 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    33394 1mjt:A (2.4) BS03 HEM 1.14.14.47 GO:0004517 ... P0A004 12467576
    33395 1mjt:A (2.4) BS04 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    33396 1mjt:A (2.4) BS05 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    33397 1mjt:A (2.4) BS06 ITU 1.14.14.47 GO:0004517 ... P0A004 12467576
    33398 1mjt:B (2.4) BS01 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    33399 1mjt:B (2.4) BS02 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    33400 1mjt:B (2.4) BS03 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).