SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    333801 5dc3:S4 (3.25) BS01 rna ? GO:0002181 ... P0CX35 27196944
    333802 5dc3:S5 (3.25) BS01 rna ? GO:0000028 ... P26783 27196944
    333803 5dc3:S6 (3.25) BS01 rna ? GO:0000462 ... P0CX37 27196944
    333804 5dc3:S7 (3.25) BS01 rna ? GO:0002181 ... P26786 27196944
    333805 5dc3:S8 (3.25) BS01 rna ? GO:0000462 ... P0CX39 27196944
    333806 5dc3:S8 (3.25) BS02 rna ? GO:0000462 ... P0CX39 27196944
    333807 5dc3:S9 (3.25) BS01 rna ? GO:0000462 ... O13516 27196944
    333808 5dc3:SM (3.25) BS01 rna ? GO:0000723 ... P39015 27196944
    333809 5dc3:SM (3.25) BS02 rna ? GO:0000723 ... P39015 27196944
    333810 5dc3:SR (3.25) BS01 rna ? GO:0001965 ... P38011 27196944
    333811 5dc3:c0 (3.25) BS01 rna N/A N/A N/A 27196944
    333812 5dc3:c1 (3.25) BS01 rna ? GO:0000028 ... P0CX47 27196944
    333813 5dc3:c2 (3.25) BS01 rna ? GO:0000028 ... P48589 27196944
    333814 5dc3:c3 (3.25) BS01 rna ? GO:0000462 ... P05756 27196944
    333815 5dc3:c3 (3.25) BS02 rna ? GO:0000462 ... P05756 27196944
    333816 5dc3:c4 (3.25) BS01 rna ? GO:0000028 ... P06367 27196944
    333817 5dc3:c5 (3.25) BS01 rna ? GO:0000028 ... Q01855 27196944
    333818 5dc3:c6 (3.25) BS01 rna ? GO:0000462 ... P0CX51 27196944
    333819 5dc3:c7 (3.25) BS01 rna ? GO:0000028 ... P02407 27196944
    333820 5dc3:c8 (3.25) BS01 rna ? GO:0000054 ... P0CX55 27196944
    333821 5dc3:c9 (3.25) BS01 rna ? GO:0000028 ... P07280 27196944
    333822 5dc3:d0 (3.25) BS01 rna ? GO:0000462 ... P38701 27196944
    333823 5dc3:d2 (3.25) BS01 rna ? GO:0002181 ... P0C0W1 27196944
    333824 5dc3:d3 (3.25) BS01 rna ? GO:0000462 ... P0CX29 27196944
    333825 5dc3:d4 (3.25) BS01 rna ? GO:0000462 ... P0CX31 27196944
    333826 5dc3:d5 (3.25) BS01 rna ? GO:0002181 ... Q3E792 27196944
    333827 5dc3:d6 (3.25) BS01 rna ? GO:0003735 ... P39939 27196944
    333828 5dc3:d6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27196944
    333829 5dc3:d7 (3.25) BS01 rna ? GO:0000028 ... P35997 27196944
    333830 5dc3:d7 (3.25) BS02 ZN ? GO:0000028 ... P35997 27196944
    333831 5dc3:d8 (3.25) BS01 rna ? GO:0000028 ... Q3E7X9 27196944
    333832 5dc3:d9 (3.25) BS01 rna ? GO:0002181 ... P41057 27196944
    333833 5dc3:d9 (3.25) BS02 ZN ? GO:0002181 ... P41057 27196944
    333834 5dc3:e0 (3.25) BS01 rna ? GO:0002181 ... P0CX33 27196944
    333835 5dc3:e1 (3.25) BS01 rna ? GO:0003735 ... P05759 27196944
    333836 5dc3:f (3.25) BS01 rna ? GO:0002182 ... P23301 27196944
    333837 5dc3:l2 (3.25) BS01 rna ? GO:0002181 ... P0CX45 27196944
    333838 5dc3:l3 (3.25) BS01 rna ? GO:0000027 ... P14126 27196944
    333839 5dc3:l4 (3.25) BS01 rna ? GO:0002181 ... P10664 27196944
    333840 5dc3:l4 (3.25) BS02 rna ? GO:0002181 ... P10664 27196944
    333841 5dc3:l5 (3.25) BS01 rna ? GO:0000027 ... P26321 27196944
    333842 5dc3:l5 (3.25) BS02 rna ? GO:0000027 ... P26321 27196944
    333843 5dc3:l6 (3.25) BS01 rna ? GO:0000027 ... Q02326 27196944
    333844 5dc3:l7 (3.25) BS01 rna ? GO:0000463 ... P05737 27196944
    333845 5dc3:l7 (3.25) BS02 rna ? GO:0000463 ... P05737 27196944
    333846 5dc3:l8 (3.25) BS01 rna ? GO:0000470 ... P17076 27196944
    333847 5dc3:l8 (3.25) BS02 rna ? GO:0000470 ... P17076 27196944
    333848 5dc3:l9 (3.25) BS01 rna ? GO:0002181 ... P05738 27196944
    333849 5dc3:m0 (3.25) BS01 rna ? GO:0000027 ... P41805 27196944
    333850 5dc3:m0 (3.25) BS02 rna ? GO:0000027 ... P41805 27196944
    333851 5dc3:m1 (3.25) BS01 rna ? GO:0000027 ... Q3E757 27196944
    333852 5dc3:m1 (3.25) BS02 rna ? GO:0000027 ... Q3E757 27196944
    333853 5dc3:m2 (3.25) BS01 rna N/A N/A N/A 27196944
    333854 5dc3:m3 (3.25) BS01 rna ? GO:0002181 ... Q12690 27196944
    333855 5dc3:m3 (3.25) BS02 rna ? GO:0002181 ... Q12690 27196944
    333856 5dc3:m4 (3.25) BS01 rna ? GO:0000027 ... P36105 27196944
    333857 5dc3:m5 (3.25) BS01 rna ? GO:0002181 ... P05748 27196944
    333858 5dc3:m5 (3.25) BS02 rna ? GO:0002181 ... P05748 27196944
    333859 5dc3:m6 (3.25) BS01 rna ? GO:0000470 ... P26784 27196944
    333860 5dc3:m7 (3.25) BS01 rna ? GO:0000448 ... P05740 27196944
    333861 5dc3:m7 (3.25) BS02 rna ? GO:0000448 ... P05740 27196944
    333862 5dc3:m8 (3.25) BS01 rna ? GO:0002181 ... P0CX49 27196944
    333863 5dc3:m9 (3.25) BS01 rna ? GO:0002181 ... P0CX82 27196944
    333864 5dc3:m9 (3.25) BS02 rna ? GO:0002181 ... P0CX82 27196944
    333865 5dc3:n0 (3.25) BS01 rna ? GO:0002181 ... P0CX23 27196944
    333866 5dc3:n0 (3.25) BS02 rna ? GO:0002181 ... P0CX23 27196944
    333867 5dc3:n1 (3.25) BS01 rna ? GO:0002181 ... Q02753 27196944
    333868 5dc3:n1 (3.25) BS02 rna ? GO:0002181 ... Q02753 27196944
    333869 5dc3:n2 (3.25) BS01 rna ? GO:0002181 ... P05749 27196944
    333870 5dc3:n3 (3.25) BS01 rna ? GO:0002181 ... P0CX41 27196944
    333871 5dc3:n3 (3.25) BS02 rna ? GO:0002181 ... P0CX41 27196944
    333872 5dc3:n4 (3.25) BS01 rna ? GO:0002181 ... P04449 27196944
    333873 5dc3:n4 (3.25) BS02 rna ? GO:0002181 ... P04449 27196944
    333874 5dc3:n5 (3.25) BS01 rna ? GO:0000027 ... P04456 27196944
    333875 5dc3:n5 (3.25) BS02 rna ? GO:0000027 ... P04456 27196944
    333876 5dc3:n6 (3.25) BS01 rna ? GO:0002181 ... P05743 27196944
    333877 5dc3:n6 (3.25) BS02 rna ? GO:0002181 ... P05743 27196944
    333878 5dc3:n7 (3.25) BS01 rna ? GO:0002181 ... P0C2H6 27196944
    333879 5dc3:n8 (3.25) BS01 rna ? GO:0002181 ... P02406 27196944
    333880 5dc3:n9 (3.25) BS01 rna ? GO:0002181 ... P05747 27196944
    333881 5dc3:o0 (3.25) BS01 rna ? GO:0002181 ... P14120 27196944
    333882 5dc3:o1 (3.25) BS01 rna ? GO:0002181 ... P0C2H8 27196944
    333883 5dc3:o2 (3.25) BS01 rna ? GO:0002181 ... P38061 27196944
    333884 5dc3:o3 (3.25) BS01 rna ? GO:0000027 ... P05744 27196944
    333885 5dc3:o4 (3.25) BS01 rna ? GO:0002181 ... P87262 27196944
    333886 5dc3:o5 (3.25) BS01 rna ? GO:0000463 ... P0CX84 27196944
    333887 5dc3:o5 (3.25) BS02 rna ? GO:0000463 ... P0CX84 27196944
    333888 5dc3:o6 (3.25) BS01 rna ? GO:0002181 ... P05745 27196944
    333889 5dc3:o7 (3.25) BS01 rna ? GO:0000448 ... P49166 27196944
    333890 5dc3:o7 (3.25) BS02 rna ? GO:0000448 ... P49166 27196944
    333891 5dc3:o7 (3.25) BS03 ZN ? GO:0000448 ... P49166 27196944
    333892 5dc3:o8 (3.25) BS01 rna ? GO:0002181 ... P49167 27196944
    333893 5dc3:o9 (3.25) BS01 rna ? GO:0002181 ... P04650 27196944
    333894 5dc3:o9 (3.25) BS02 rna ? GO:0002181 ... P04650 27196944
    333895 5dc3:p0 (3.25) BS01 rna ? GO:0000027 ... P05317 27196944
    333896 5dc3:q0 (3.25) BS01 rna ? GO:0003735 ... P0CH08 27196944
    333897 5dc3:q0 (3.25) BS02 ZN ? GO:0003735 ... P0CH08 27196944
    333898 5dc3:q2 (3.25) BS01 rna ? GO:0002181 ... P0CX27 27196944
    333899 5dc3:q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27196944
    333900 5dc3:q3 (3.25) BS01 rna ? GO:0002181 ... P0CX25 27196944
    333901 5dc3:q3 (3.25) BS02 rna ? GO:0002181 ... P0CX25 27196944
    333902 5dc3:q3 (3.25) BS03 ZN ? GO:0002181 ... P0CX25 27196944
    333903 5dc3:s0 (3.25) BS01 rna ? GO:0000028 ... P32905 27196944
    333904 5dc3:s1 (3.25) BS01 rna ? GO:0000462 ... P33442 27196944
    333905 5dc3:s1 (3.25) BS02 rna ? GO:0000462 ... P33442 27196944
    333906 5dc3:s2 (3.25) BS01 rna ? GO:0000054 ... P25443 27196944
    333907 5dc3:s3 (3.25) BS01 rna ? GO:0000054 ... P05750 27196944
    333908 5dc3:s4 (3.25) BS01 rna ? GO:0002181 ... P0CX35 27196944
    333909 5dc3:s5 (3.25) BS01 rna ? GO:0000028 ... P26783 27196944
    333910 5dc3:s6 (3.25) BS01 rna ? GO:0000462 ... P0CX37 27196944
    333911 5dc3:s7 (3.25) BS01 rna ? GO:0002181 ... P26786 27196944
    333912 5dc3:s8 (3.25) BS01 rna ? GO:0000462 ... P0CX39 27196944
    333913 5dc3:s8 (3.25) BS02 rna ? GO:0000462 ... P0CX39 27196944
    333914 5dc3:s9 (3.25) BS01 rna ? GO:0000462 ... O13516 27196944
    333915 5dc3:sM (3.25) BS01 rna ? GO:0000723 ... P39015 27196944
    333916 5dc3:sM (3.25) BS02 rna ? GO:0000723 ... P39015 27196944
    333917 5dc3:sR (3.25) BS01 rna ? GO:0001965 ... P38011 27196944
    333918 5dc5:A (1.94) BS01 B3N 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333919 5dc5:A (1.94) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333920 5dc5:A (1.94) BS03 B3N 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333921 5dc5:B (1.94) BS01 B3N 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333922 5dc5:B (1.94) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333923 5dc5:B (1.94) BS03 B3N 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333924 5dc6:A (1.553) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333925 5dc6:A (1.553) BS02 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333926 5dc6:A (1.553) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333927 5dc6:B (1.553) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333928 5dc6:B (1.553) BS02 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333929 5dc6:B (1.553) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333930 5dc7:A (2.3) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333931 5dc7:A (2.3) BS02 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333932 5dc7:A (2.3) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333933 5dc7:B (2.3) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333934 5dc7:B (2.3) BS02 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333935 5dc7:B (2.3) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333936 5dc8:A (1.3) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333937 5dc8:A (1.3) BS02 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333938 5dc8:A (1.3) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333939 5dc8:B (1.3) BS01 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333940 5dc8:B (1.3) BS02 peptide 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333941 5dc8:B (1.3) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 26806311
    333942 5dcb:A (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333943 5dcb:A (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333944 5dcb:A (2.05) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333945 5dcb:B (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333946 5dcb:B (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333947 5dcb:B (2.05) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333948 5dcb:C (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333949 5dcb:C (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333950 5dcb:C (2.05) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333951 5dcb:D (2.05) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333952 5dcb:D (2.05) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333953 5dcb:D (2.05) BS03 PHE 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333954 5dcc:A (2.451) BS01 58U 2.3.2.- GO:0005886 ... I6Y9J2 28545389
    333955 5dcc:B (2.451) BS01 58U 2.3.2.- GO:0005886 ... I6Y9J2 28545389
    333956 5dcd:A (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333957 5dcd:A (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333958 5dcd:A (2.31) BS03 TYR 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333959 5dcd:B (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333960 5dcd:B (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333961 5dcd:B (2.31) BS03 TYR 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333962 5dcd:C (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333963 5dcd:C (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333964 5dcd:C (2.31) BS03 TYR 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333965 5dcd:D (2.31) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333966 5dcd:D (2.31) BS02 TMO 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333967 5dcd:D (2.31) BS03 TYR 2.5.1.54 GO:0003849 ... Q9K169 N/A
    333968 5dce:A (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333969 5dce:A (2.23) BS02 TRP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333970 5dce:B (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333971 5dce:B (2.23) BS02 TRP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333972 5dce:C (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333973 5dce:C (2.23) BS02 TRP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333974 5dce:D (2.23) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333975 5dce:D (2.23) BS02 TRP 2.5.1.54 GO:0003849 ... Q9K169 26828675
    333976 5dcg:B (2.01) BS01 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    333977 5dch:A (1.447) BS01 1YO ? GO:0016491 ... P0C2B2 28346540
    333978 5dco:A (2.326) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    333979 5dco:A (2.326) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    333980 5dcr:A (2.108) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    333981 5dcr:A (2.108) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    333982 5dcs:A (2.006) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    333983 5dcs:A (2.006) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    333984 5dcu:A (1.4) BS01 NAP 1.3.1.122 GO:0005737 ... K7WDL7 26551396
    333985 5dcu:A (1.4) BS02 TEG 1.3.1.122 GO:0005737 ... K7WDL7 26551396
    333986 5dcu:B (1.4) BS01 NAP 1.3.1.122 GO:0005737 ... K7WDL7 26551396
    333987 5dcu:B (1.4) BS02 TEG 1.3.1.122 GO:0005737 ... K7WDL7 26551396
    333988 5dcv:A (3.401) BS01 rna ? GO:0001682 ... P62009 27114305
    333989 5dcv:A (3.401) BS02 rna ? GO:0001682 ... P62009 27114305
    333990 5dcv:C (3.401) BS01 rna ? GO:0001682 ... P62009 27114305
    333991 5dcv:C (3.401) BS02 rna ? GO:0001682 ... P62009 27114305
    333992 5dcx:A (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333993 5dcx:B (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333994 5dcx:C (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333995 5dcx:D (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333996 5dcx:E (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333997 5dcx:F (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333998 5dcx:G (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    333999 5dcx:H (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310
    334000 5dcx:I (2.6) BS01 MG 3.6.4.12 N/A P03132 26314310

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).