SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    334201 5df7:B (2.0) BS01 59H 3.4.16.4 GO:0000917 ... Q51504 26823174
    334202 5df8:A (2.0) BS01 59F 3.4.16.4 GO:0000917 ... Q51504 26823174
    334203 5df8:B (2.0) BS01 59F 3.4.16.4 GO:0000917 ... Q51504 26823174
    334204 5df9:A (2.7) BS01 59J 3.4.16.4 GO:0000917 ... Q51504 26823174
    334205 5dfa:A (2.5) BS01 ZN 3.2.1.23 GO:0004565 ... F8TRX0 26627651
    334206 5dfa:B (2.5) BS01 ZN 3.2.1.23 GO:0004565 ... F8TRX0 26627651
    334207 5dfa:C (2.5) BS01 ZN 3.2.1.23 GO:0004565 ... F8TRX0 26627651
    334208 5dfc:A (1.5) BS01 EAM ? N/A P25440 26367539 BindingDB: IC50=32.5nM, Ki=74nM, Kd=100nM
    334209 5dfd:A (1.5) BS01 59E ? N/A P25440 26367539 BindingDB: Kd=45nM
    334210 5dfe:QB (3.09998) BS01 rna ? GO:0003735 ... P80371 27681416
    334211 5dfe:QB (3.09998) BS02 MG ? GO:0003735 ... P80371 27681416
    334212 5dfe:QC (3.09998) BS01 rna ? GO:0003676 ... P80372 27681416
    334213 5dfe:QD (3.09998) BS01 rna ? GO:0003723 ... P80373 27681416
    334214 5dfe:QD (3.09998) BS02 SF4 ? GO:0003723 ... P80373 27681416
    334215 5dfe:QE (3.09998) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    334216 5dfe:QE (3.09998) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    334217 5dfe:QF (3.09998) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    334218 5dfe:QG (3.09998) BS01 rna ? GO:0000049 ... P17291 27681416
    334219 5dfe:QH (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334220 5dfe:QI (3.09998) BS01 rna ? GO:0000049 ... P80374 27681416
    334221 5dfe:QJ (3.09998) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    334222 5dfe:QK (3.09998) BS01 rna ? GO:0003735 ... P80376 27681416
    334223 5dfe:QK (3.09998) BS02 MG ? GO:0003735 ... P80376 27681416
    334224 5dfe:QL (3.09998) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    334225 5dfe:QL (3.09998) BS02 MG ? GO:0000049 ... Q5SHN3 27681416
    334226 5dfe:QM (3.09998) BS01 rna ? GO:0000049 ... P80377 27681416
    334227 5dfe:QN (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334228 5dfe:QN (3.09998) BS02 ZN N/A GO:0003735 ... N/A 27681416
    334229 5dfe:QO (3.09998) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    334230 5dfe:QO (3.09998) BS02 rna ? GO:0003735 ... Q5SJ76 27681416
    334231 5dfe:QP (3.09998) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    334232 5dfe:QQ (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334233 5dfe:QR (3.09998) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    334234 5dfe:QS (3.09998) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    334235 5dfe:QT (3.09998) BS01 rna ? GO:0003723 ... P80380 27681416
    334236 5dfe:QT (3.09998) BS02 MG ? GO:0003723 ... P80380 27681416
    334237 5dfe:QY (3.09998) BS01 rna ? GO:0003747 ... P07012 27681416
    334238 5dfe:QY (3.09998) BS02 rna ? GO:0003747 ... P07012 27681416
    334239 5dfe:QY (3.09998) BS03 rna ? GO:0003747 ... P07012 27681416
    334240 5dfe:QY (3.09998) BS04 rna ? GO:0003747 ... P07012 27681416
    334241 5dfe:QY (3.09998) BS05 MG ? GO:0003747 ... P07012 27681416
    334242 5dfe:R0 (3.09998) BS01 rna ? GO:0003735 ... P60493 27681416
    334243 5dfe:R0 (3.09998) BS02 rna ? GO:0003735 ... P60493 27681416
    334244 5dfe:R0 (3.09998) BS03 MG ? GO:0003735 ... P60493 27681416
    334245 5dfe:R0 (3.09998) BS04 MG ? GO:0003735 ... P60493 27681416
    334246 5dfe:R0 (3.09998) BS05 MG ? GO:0003735 ... P60493 27681416
    334247 5dfe:R1 (3.09998) BS01 rna ? GO:0003735 ... P60494 27681416
    334248 5dfe:R1 (3.09998) BS02 MG ? GO:0003735 ... P60494 27681416
    334249 5dfe:R2 (3.09998) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    334250 5dfe:R3 (3.09998) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    334251 5dfe:R3 (3.09998) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    334252 5dfe:R3 (3.09998) BS03 MG ? GO:0003735 ... Q5SHQ6 27681416
    334253 5dfe:R3 (3.09998) BS04 MG ? GO:0003735 ... Q5SHQ6 27681416
    334254 5dfe:R4 (3.09998) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    334255 5dfe:R4 (3.09998) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    334256 5dfe:R5 (3.09998) BS01 rna ? GO:0003735 ... P80339 27681416
    334257 5dfe:R5 (3.09998) BS02 MG ? GO:0003735 ... P80339 27681416
    334258 5dfe:R5 (3.09998) BS03 ZN ? GO:0003735 ... P80339 27681416
    334259 5dfe:R6 (3.09998) BS01 rna ? GO:0000049 ... P35871 27681416
    334260 5dfe:R6 (3.09998) BS02 ZN ? GO:0000049 ... P35871 27681416
    334261 5dfe:R7 (3.09998) BS01 rna ? GO:0003735 ... P80340 27681416
    334262 5dfe:R7 (3.09998) BS02 MG ? GO:0003735 ... P80340 27681416
    334263 5dfe:R8 (3.09998) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    334264 5dfe:R8 (3.09998) BS02 MG ? GO:0003735 ... Q5SKU1 27681416
    334265 5dfe:R8 (3.09998) BS03 MG ? GO:0003735 ... Q5SKU1 27681416
    334266 5dfe:R9 (3.09998) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    334267 5dfe:R9 (3.09998) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    334268 5dfe:RD (3.09998) BS01 rna ? GO:0002181 ... P60405 27681416
    334269 5dfe:RD (3.09998) BS02 rna ? GO:0002181 ... P60405 27681416
    334270 5dfe:RD (3.09998) BS03 MG ? GO:0002181 ... P60405 27681416
    334271 5dfe:RD (3.09998) BS04 MG ? GO:0002181 ... P60405 27681416
    334272 5dfe:RD (3.09998) BS05 MG ? GO:0002181 ... P60405 27681416
    334273 5dfe:RD (3.09998) BS06 MG ? GO:0002181 ... P60405 27681416
    334274 5dfe:RD (3.09998) BS07 MG ? GO:0002181 ... P60405 27681416
    334275 5dfe:RD (3.09998) BS08 MG ? GO:0002181 ... P60405 27681416
    334276 5dfe:RD (3.09998) BS09 MG ? GO:0002181 ... P60405 27681416
    334277 5dfe:RD (3.09998) BS10 MG ? GO:0002181 ... P60405 27681416
    334278 5dfe:RD (3.09998) BS11 MG ? GO:0002181 ... P60405 27681416
    334279 5dfe:RE (3.09998) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    334280 5dfe:RE (3.09998) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    334281 5dfe:RE (3.09998) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    334282 5dfe:RE (3.09998) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    334283 5dfe:RF (3.09998) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    334284 5dfe:RF (3.09998) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    334285 5dfe:RF (3.09998) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    334286 5dfe:RF (3.09998) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    334287 5dfe:RF (3.09998) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    334288 5dfe:RF (3.09998) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    334289 5dfe:RF (3.09998) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    334290 5dfe:RF (3.09998) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    334291 5dfe:RF (3.09998) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    334292 5dfe:RF (3.09998) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    334293 5dfe:RF (3.09998) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    334294 5dfe:RF (3.09998) BS12 MG ? GO:0003735 ... Q5SHN9 27681416
    334295 5dfe:RG (3.09998) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    334296 5dfe:RG (3.09998) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    334297 5dfe:RG (3.09998) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    334298 5dfe:RG (3.09998) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    334299 5dfe:RG (3.09998) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    334300 5dfe:RG (3.09998) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    334301 5dfe:RH (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334302 5dfe:RI (3.09998) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    334303 5dfe:RN (3.09998) BS01 rna ? GO:0003729 ... P60488 27681416
    334304 5dfe:RN (3.09998) BS02 MG ? GO:0003729 ... P60488 27681416
    334305 5dfe:RN (3.09998) BS03 MG ? GO:0003729 ... P60488 27681416
    334306 5dfe:RO (3.09998) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    334307 5dfe:RO (3.09998) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    334308 5dfe:RP (3.09998) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    334309 5dfe:RP (3.09998) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    334310 5dfe:RP (3.09998) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    334311 5dfe:RQ (3.09998) BS01 rna ? GO:0000049 ... P60489 27681416
    334312 5dfe:RQ (3.09998) BS02 rna ? GO:0000049 ... P60489 27681416
    334313 5dfe:RQ (3.09998) BS03 MG ? GO:0000049 ... P60489 27681416
    334314 5dfe:RQ (3.09998) BS04 MG ? GO:0000049 ... P60489 27681416
    334315 5dfe:RQ (3.09998) BS05 MG ? GO:0000049 ... P60489 27681416
    334316 5dfe:RQ (3.09998) BS06 MG ? GO:0000049 ... P60489 27681416
    334317 5dfe:RR (3.09998) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    334318 5dfe:RR (3.09998) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    334319 5dfe:RR (3.09998) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    334320 5dfe:RR (3.09998) BS04 MG ? GO:0003735 ... Q9Z9H5 27681416
    334321 5dfe:RS (3.09998) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    334322 5dfe:RS (3.09998) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    334323 5dfe:RT (3.09998) BS01 rna ? GO:0003735 ... P60490 27681416
    334324 5dfe:RT (3.09998) BS02 rna ? GO:0003735 ... P60490 27681416
    334325 5dfe:RU (3.09998) BS01 rna ? GO:0000027 ... P60491 27681416
    334326 5dfe:RU (3.09998) BS02 MG ? GO:0000027 ... P60491 27681416
    334327 5dfe:RU (3.09998) BS03 MG ? GO:0000027 ... P60491 27681416
    334328 5dfe:RU (3.09998) BS04 MG ? GO:0000027 ... P60491 27681416
    334329 5dfe:RU (3.09998) BS05 MG ? GO:0000027 ... P60491 27681416
    334330 5dfe:RU (3.09998) BS06 MG ? GO:0000027 ... P60491 27681416
    334331 5dfe:RV (3.09998) BS01 rna ? GO:0003723 ... P60492 27681416
    334332 5dfe:RV (3.09998) BS02 MG ? GO:0003723 ... P60492 27681416
    334333 5dfe:RV (3.09998) BS03 MG ? GO:0003723 ... P60492 27681416
    334334 5dfe:RV (3.09998) BS04 MG ? GO:0003723 ... P60492 27681416
    334335 5dfe:RW (3.09998) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    334336 5dfe:RW (3.09998) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    334337 5dfe:RX (3.09998) BS01 rna ? GO:0003735 ... Q5SHP0 27681416
    334338 5dfe:RY (3.09998) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    334339 5dfe:RY (3.09998) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    334340 5dfe:RZ (3.09998) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    334341 5dfe:RZ (3.09998) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    334342 5dfe:RZ (3.09998) BS03 rna ? GO:0003723 ... Q5SHZ1 27681416
    334343 5dfe:XB (3.09998) BS01 rna ? GO:0003735 ... P80371 27681416
    334344 5dfe:XC (3.09998) BS01 rna ? GO:0003676 ... P80372 27681416
    334345 5dfe:XD (3.09998) BS01 rna ? GO:0003723 ... P80373 27681416
    334346 5dfe:XD (3.09998) BS02 SF4 ? GO:0003723 ... P80373 27681416
    334347 5dfe:XE (3.09998) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    334348 5dfe:XE (3.09998) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    334349 5dfe:XF (3.09998) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    334350 5dfe:XF (3.09998) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    334351 5dfe:XG (3.09998) BS01 rna ? GO:0000049 ... P17291 27681416
    334352 5dfe:XH (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334353 5dfe:XI (3.09998) BS01 rna ? GO:0000049 ... P80374 27681416
    334354 5dfe:XJ (3.09998) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    334355 5dfe:XJ (3.09998) BS02 MG ? GO:0000049 ... Q5SHN7 27681416
    334356 5dfe:XK (3.09998) BS01 rna ? GO:0003735 ... P80376 27681416
    334357 5dfe:XL (3.09998) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    334358 5dfe:XM (3.09998) BS01 rna ? GO:0000049 ... P80377 27681416
    334359 5dfe:XN (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334360 5dfe:XN (3.09998) BS02 ZN N/A GO:0003735 ... N/A 27681416
    334361 5dfe:XO (3.09998) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    334362 5dfe:XP (3.09998) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    334363 5dfe:XQ (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334364 5dfe:XR (3.09998) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    334365 5dfe:XS (3.09998) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    334366 5dfe:XT (3.09998) BS01 rna ? GO:0003723 ... P80380 27681416
    334367 5dfe:XT (3.09998) BS02 MG ? GO:0003723 ... P80380 27681416
    334368 5dfe:XY (3.09998) BS01 rna ? GO:0003747 ... P07012 27681416
    334369 5dfe:XY (3.09998) BS02 rna ? GO:0003747 ... P07012 27681416
    334370 5dfe:XY (3.09998) BS03 rna ? GO:0003747 ... P07012 27681416
    334371 5dfe:XY (3.09998) BS04 rna ? GO:0003747 ... P07012 27681416
    334372 5dfe:XY (3.09998) BS05 MG ? GO:0003747 ... P07012 27681416
    334373 5dfe:Y0 (3.09998) BS01 rna ? GO:0003735 ... P60493 27681416
    334374 5dfe:Y0 (3.09998) BS02 rna ? GO:0003735 ... P60493 27681416
    334375 5dfe:Y0 (3.09998) BS03 rna ? GO:0003735 ... P60493 27681416
    334376 5dfe:Y0 (3.09998) BS04 MG ? GO:0003735 ... P60493 27681416
    334377 5dfe:Y1 (3.09998) BS01 rna ? GO:0003735 ... P60494 27681416
    334378 5dfe:Y2 (3.09998) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    334379 5dfe:Y3 (3.09998) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    334380 5dfe:Y3 (3.09998) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    334381 5dfe:Y4 (3.09998) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    334382 5dfe:Y4 (3.09998) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    334383 5dfe:Y5 (3.09998) BS01 rna ? GO:0003735 ... P80339 27681416
    334384 5dfe:Y5 (3.09998) BS02 MG ? GO:0003735 ... P80339 27681416
    334385 5dfe:Y5 (3.09998) BS03 MG ? GO:0003735 ... P80339 27681416
    334386 5dfe:Y5 (3.09998) BS04 ZN ? GO:0003735 ... P80339 27681416
    334387 5dfe:Y6 (3.09998) BS01 rna ? GO:0000049 ... P35871 27681416
    334388 5dfe:Y6 (3.09998) BS02 ZN ? GO:0000049 ... P35871 27681416
    334389 5dfe:Y7 (3.09998) BS01 rna ? GO:0003735 ... P80340 27681416
    334390 5dfe:Y7 (3.09998) BS02 MG ? GO:0003735 ... P80340 27681416
    334391 5dfe:Y8 (3.09998) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    334392 5dfe:Y9 (3.09998) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    334393 5dfe:Y9 (3.09998) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    334394 5dfe:YD (3.09998) BS01 rna ? GO:0002181 ... P60405 27681416
    334395 5dfe:YD (3.09998) BS02 rna ? GO:0002181 ... P60405 27681416
    334396 5dfe:YD (3.09998) BS03 MG ? GO:0002181 ... P60405 27681416
    334397 5dfe:YD (3.09998) BS04 MG ? GO:0002181 ... P60405 27681416
    334398 5dfe:YD (3.09998) BS05 MG ? GO:0002181 ... P60405 27681416
    334399 5dfe:YD (3.09998) BS06 MG ? GO:0002181 ... P60405 27681416
    334400 5dfe:YD (3.09998) BS07 MG ? GO:0002181 ... P60405 27681416

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).