SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    334401 5dfe:YD (3.09998) BS08 MG ? GO:0002181 ... P60405 27681416
    334402 5dfe:YD (3.09998) BS09 MG ? GO:0002181 ... P60405 27681416
    334403 5dfe:YD (3.09998) BS10 MG ? GO:0002181 ... P60405 27681416
    334404 5dfe:YE (3.09998) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    334405 5dfe:YE (3.09998) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    334406 5dfe:YE (3.09998) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    334407 5dfe:YF (3.09998) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    334408 5dfe:YF (3.09998) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    334409 5dfe:YF (3.09998) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    334410 5dfe:YF (3.09998) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    334411 5dfe:YG (3.09998) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    334412 5dfe:YG (3.09998) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    334413 5dfe:YG (3.09998) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    334414 5dfe:YG (3.09998) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    334415 5dfe:YG (3.09998) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    334416 5dfe:YH (3.09998) BS01 rna N/A GO:0003735 ... N/A 27681416
    334417 5dfe:YI (3.09998) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    334418 5dfe:YI (3.09998) BS02 rna ? GO:0003735 ... Q5SLQ1 27681416
    334419 5dfe:YN (3.09998) BS01 rna ? GO:0003729 ... P60488 27681416
    334420 5dfe:YO (3.09998) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    334421 5dfe:YO (3.09998) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    334422 5dfe:YP (3.09998) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    334423 5dfe:YQ (3.09998) BS01 rna ? GO:0000049 ... P60489 27681416
    334424 5dfe:YQ (3.09998) BS02 rna ? GO:0000049 ... P60489 27681416
    334425 5dfe:YQ (3.09998) BS03 MG ? GO:0000049 ... P60489 27681416
    334426 5dfe:YQ (3.09998) BS04 MG ? GO:0000049 ... P60489 27681416
    334427 5dfe:YR (3.09998) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    334428 5dfe:YR (3.09998) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    334429 5dfe:YS (3.09998) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    334430 5dfe:YS (3.09998) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    334431 5dfe:YT (3.09998) BS01 rna ? GO:0003735 ... P60490 27681416
    334432 5dfe:YT (3.09998) BS02 rna ? GO:0003735 ... P60490 27681416
    334433 5dfe:YU (3.09998) BS01 rna ? GO:0000027 ... P60491 27681416
    334434 5dfe:YV (3.09998) BS01 rna ? GO:0003723 ... P60492 27681416
    334435 5dfe:YV (3.09998) BS02 MG ? GO:0003723 ... P60492 27681416
    334436 5dfe:YV (3.09998) BS03 MG ? GO:0003723 ... P60492 27681416
    334437 5dfe:YW (3.09998) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    334438 5dfe:YW (3.09998) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    334439 5dfe:YW (3.09998) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    334440 5dfe:YX (3.09998) BS01 rna ? GO:0003735 ... Q5SHP0 27681416
    334441 5dfe:YY (3.09998) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    334442 5dfe:YY (3.09998) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    334443 5dfe:YZ (3.09998) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    334444 5dfe:YZ (3.09998) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    334445 5dfe:YZ (3.09998) BS03 rna ? GO:0003723 ... Q5SHZ1 27681416
    334446 5dff:A (1.57) BS01 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334447 5dff:A (1.57) BS02 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334448 5dff:A (1.57) BS03 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334449 5dfh:A (1.949) BS01 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334450 5dfh:A (1.949) BS02 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334451 5dfh:A (1.949) BS03 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334452 5dfi:A (1.63) BS01 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334453 5dfi:A (1.63) BS02 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334454 5dfj:A (1.85) BS01 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334455 5dfj:A (1.85) BS02 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334456 5dfm:A (2.301) BS01 GLC ? GO:0005515 ... P0AEX9 26472759
    334457 5dfm:A (2.301) BS02 GLC ? GO:0005515 ... P0AEX9 26472759
    334458 5dfm:B (2.301) BS01 GLC ? GO:0005515 ... P0AEX9 26472759
    334459 5dfm:B (2.301) BS02 GLC ? GO:0005515 ... P0AEX9 26472759
    334460 5dfp:A (2.2) BS01 59U 2.7.11.1 GO:0004672 ... Q13153 26713112 MOAD: Ki=22nM
    BindingDB: Ki=22nM, IC50=222nM
    334461 5dfs:A (1.15) BS01 HEC ? GO:0005739 ... P00003 26775610
    334462 5dfs:B (1.15) BS01 HEC ? GO:0005739 ... P00003 26775610
    334463 5dg0:A (1.8) BS01 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334464 5dg0:A (1.8) BS02 dna 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334465 5dg0:A (1.8) BS03 MN 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334466 5dg0:A (1.8) BS04 MN 3.1.11.2
    3.1.21.-
    GO:0003677 ... P27695 26458045
    334467 5dg1:C (3.2) BS01 GAL ? GO:0005515 ... P05162 27563008
    334468 5dg1:D (3.2) BS01 GAL ? GO:0005515 ... P05162 27563008
    334469 5dg1:H (3.2) BS01 BGC ? GO:0005515 ... P05162 27563008
    334470 5dg1:I (3.2) BS01 GAL ? GO:0005515 ... P05162 27563008
    334471 5dg2:B (1.612) BS01 GLC ? GO:0005515 ... P05162 27563008
    334472 5dg2:B (1.612) BS02 GAL ? GO:0005515 ... P05162 27563008
    334473 5dg3:A (2.3) BS01 U21 2.3.1.129 GO:0005737 ... A6V1E4 26352800
    334474 5dg3:B (2.3) BS01 U21 2.3.1.129 GO:0005737 ... A6V1E4 26352800
    334475 5dg3:B (2.3) BS02 U21 2.3.1.129 GO:0005737 ... A6V1E4 26352800
    334476 5dg3:C (2.3) BS01 U21 2.3.1.129 GO:0005737 ... A6V1E4 26352800
    334477 5dg3:D (2.3) BS01 U21 2.3.1.129 GO:0005737 ... A6V1E4 26352800
    334478 5dg3:E (2.3) BS01 U21 2.3.1.129 GO:0005737 ... A6V1E4 26352800
    334479 5dg5:A (2.6) BS01 5B4 2.7.10.1 GO:0004672 ... P08581 26285778
    334480 5dg5:B (2.6) BS01 5B4 2.7.10.1 GO:0004672 ... P08581 26285778
    334481 5dg6:A (2.35) BS01 V66 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 26823007
    334482 5dg7:A (2.26) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334483 5dg7:A (2.26) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334484 5dg7:A (2.26) BS03 TTP 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334485 5dg7:A (2.26) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334486 5dg7:A (2.26) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334487 5dg8:A (2.12) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334488 5dg8:A (2.12) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334489 5dg8:A (2.12) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334490 5dg8:A (2.12) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334491 5dg8:A (2.12) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334492 5dg9:A (2.15) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334493 5dg9:A (2.15) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334494 5dg9:A (2.15) BS03 XG4 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334495 5dg9:A (2.15) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334496 5dg9:A (2.15) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334497 5dga:A (2.3) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334498 5dga:A (2.3) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334499 5dga:A (2.3) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334500 5dga:A (2.3) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334501 5dga:A (2.3) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334502 5dgb:A (1.79) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334503 5dgb:A (1.79) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334504 5dgb:A (1.79) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334505 5dgb:A (1.79) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334506 5dgb:A (1.79) BS05 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    334507 5dgc:A (1.94) BS01 BEF ? GO:0000160 ... P0AE68 26569142
    334508 5dgc:A (1.94) BS02 MN ? GO:0000160 ... P0AE68 26569142
    334509 5dgc:A (1.94) BS03 IMD ? GO:0000160 ... P0AE68 26569142
    334510 5dgc:B (1.94) BS01 MN ? GO:0000160 ... P0AE68 26569142
    334511 5dgc:B (1.94) BS02 BEF ? GO:0000160 ... P0AE68 26569142
    334512 5dgc:B (1.94) BS03 IMD ? GO:0000160 ... P0AE68 26569142
    334513 5dgd:A (1.13) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    334514 5dgd:A (1.13) BS02 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    334515 5dgd:A (1.13) BS03 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    334516 5dgd:A (1.13) BS04 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    334517 5dgd:A (1.13) BS05 TPP 4.1.1.7 GO:0000287 ... P20906 N/A
    334518 5dge:C0 (3.45) BS01 rna ? GO:0000054 ... Q08745 N/A
    334519 5dge:C1 (3.45) BS01 rna ? GO:0000028 ... P0CX47 N/A
    334520 5dge:C2 (3.45) BS01 rna ? GO:0000028 ... P48589 N/A
    334521 5dge:C3 (3.45) BS01 rna ? GO:0000462 ... P05756 N/A
    334522 5dge:C3 (3.45) BS02 rna ? GO:0000462 ... P05756 N/A
    334523 5dge:C3 (3.45) BS03 OHX ? GO:0000462 ... P05756 N/A
    334524 5dge:C4 (3.45) BS01 rna ? GO:0000028 ... P06367 N/A
    334525 5dge:C5 (3.45) BS01 rna ? GO:0000028 ... Q01855 N/A
    334526 5dge:C5 (3.45) BS02 rna ? GO:0000028 ... Q01855 N/A
    334527 5dge:C5 (3.45) BS03 OHX ? GO:0000028 ... Q01855 N/A
    334528 5dge:C6 (3.45) BS01 rna ? GO:0000462 ... P0CX51 N/A
    334529 5dge:C7 (3.45) BS01 rna ? GO:0000028 ... P02407 N/A
    334530 5dge:C8 (3.45) BS01 rna ? GO:0000054 ... P0CX55 N/A
    334531 5dge:C8 (3.45) BS02 MG ? GO:0000054 ... P0CX55 N/A
    334532 5dge:C8 (3.45) BS03 OHX ? GO:0000054 ... P0CX55 N/A
    334533 5dge:C9 (3.45) BS01 rna ? GO:0000028 ... P07280 N/A
    334534 5dge:D0 (3.45) BS01 rna ? GO:0000462 ... P38701 N/A
    334535 5dge:D2 (3.45) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    334536 5dge:D3 (3.45) BS01 rna ? GO:0000462 ... P0CX29 N/A
    334537 5dge:D4 (3.45) BS01 rna ? GO:0000462 ... P0CX31 N/A
    334538 5dge:D5 (3.45) BS01 rna ? GO:0002181 ... Q3E792 N/A
    334539 5dge:D6 (3.45) BS01 rna ? GO:0003735 ... P39939 N/A
    334540 5dge:D6 (3.45) BS02 ZN ? GO:0003735 ... P39939 N/A
    334541 5dge:D7 (3.45) BS01 rna ? GO:0000028 ... P35997 N/A
    334542 5dge:D8 (3.45) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    334543 5dge:D9 (3.45) BS01 rna ? GO:0002181 ... P41057 N/A
    334544 5dge:D9 (3.45) BS02 ZN ? GO:0002181 ... P41057 N/A
    334545 5dge:E0 (3.45) BS01 rna ? GO:0002181 ... P0CX33 N/A
    334546 5dge:E1 (3.45) BS01 rna ? GO:0003735 ... P05759 N/A
    334547 5dge:E1 (3.45) BS02 ZN ? GO:0003735 ... P05759 N/A
    334548 5dge:L2 (3.45) BS01 rna ? GO:0002181 ... P0CX45 N/A
    334549 5dge:L2 (3.45) BS02 rna ? GO:0002181 ... P0CX45 N/A
    334550 5dge:L2 (3.45) BS03 MG ? GO:0002181 ... P0CX45 N/A
    334551 5dge:L3 (3.45) BS01 rna ? GO:0000027 ... P14126 N/A
    334552 5dge:L3 (3.45) BS02 OHX ? GO:0000027 ... P14126 N/A
    334553 5dge:L3 (3.45) BS03 OHX ? GO:0000027 ... P14126 N/A
    334554 5dge:L4 (3.45) BS01 rna ? GO:0002181 ... P10664 N/A
    334555 5dge:L4 (3.45) BS02 rna ? GO:0002181 ... P10664 N/A
    334556 5dge:L4 (3.45) BS03 OHX ? GO:0002181 ... P10664 N/A
    334557 5dge:L5 (3.45) BS01 rna ? GO:0000027 ... P26321 N/A
    334558 5dge:L5 (3.45) BS02 rna ? GO:0000027 ... P26321 N/A
    334559 5dge:L5 (3.45) BS03 OHX ? GO:0000027 ... P26321 N/A
    334560 5dge:L6 (3.45) BS01 rna ? GO:0000027 ... Q02326 N/A
    334561 5dge:L7 (3.45) BS01 rna ? GO:0000463 ... P05737 N/A
    334562 5dge:L7 (3.45) BS02 rna ? GO:0000463 ... P05737 N/A
    334563 5dge:L8 (3.45) BS01 rna ? GO:0000470 ... P17076 N/A
    334564 5dge:L8 (3.45) BS02 rna ? GO:0000470 ... P17076 N/A
    334565 5dge:L9 (3.45) BS01 rna ? GO:0002181 ... P05738 N/A
    334566 5dge:M0 (3.45) BS01 rna ? GO:0000027 ... P41805 N/A
    334567 5dge:M0 (3.45) BS02 rna ? GO:0000027 ... P41805 N/A
    334568 5dge:M0 (3.45) BS03 MG ? GO:0000027 ... P41805 N/A
    334569 5dge:M0 (3.45) BS04 OHX ? GO:0000027 ... P41805 N/A
    334570 5dge:M0 (3.45) BS05 OHX ? GO:0000027 ... P41805 N/A
    334571 5dge:M1 (3.45) BS01 rna ? GO:0000027 ... Q3E757 N/A
    334572 5dge:M1 (3.45) BS02 rna ? GO:0000027 ... Q3E757 N/A
    334573 5dge:M3 (3.45) BS01 rna ? GO:0002181 ... Q12690 N/A
    334574 5dge:M3 (3.45) BS02 rna ? GO:0002181 ... Q12690 N/A
    334575 5dge:M4 (3.45) BS01 rna ? GO:0000027 ... P36105 N/A
    334576 5dge:M5 (3.45) BS01 rna ? GO:0002181 ... P05748 N/A
    334577 5dge:M5 (3.45) BS02 rna ? GO:0002181 ... P05748 N/A
    334578 5dge:M5 (3.45) BS03 OHX ? GO:0002181 ... P05748 N/A
    334579 5dge:M6 (3.45) BS01 rna ? GO:0000470 ... P26784 N/A
    334580 5dge:M6 (3.45) BS02 MG ? GO:0000470 ... P26784 N/A
    334581 5dge:M7 (3.45) BS01 rna ? GO:0000448 ... P05740 N/A
    334582 5dge:M7 (3.45) BS02 rna ? GO:0000448 ... P05740 N/A
    334583 5dge:M7 (3.45) BS03 MG ? GO:0000448 ... P05740 N/A
    334584 5dge:M8 (3.45) BS01 rna ? GO:0002181 ... P0CX49 N/A
    334585 5dge:M9 (3.45) BS01 rna ? GO:0002181 ... P0CX82 N/A
    334586 5dge:M9 (3.45) BS02 rna ? GO:0002181 ... P0CX82 N/A
    334587 5dge:N0 (3.45) BS01 rna ? GO:0002181 ... P0CX23 N/A
    334588 5dge:N0 (3.45) BS02 rna ? GO:0002181 ... P0CX23 N/A
    334589 5dge:N1 (3.45) BS01 rna ? GO:0002181 ... Q02753 N/A
    334590 5dge:N1 (3.45) BS02 rna ? GO:0002181 ... Q02753 N/A
    334591 5dge:N1 (3.45) BS03 OHX ? GO:0002181 ... Q02753 N/A
    334592 5dge:N2 (3.45) BS01 rna ? GO:0002181 ... P05749 N/A
    334593 5dge:N3 (3.45) BS01 rna ? GO:0002181 ... P0CX41 N/A
    334594 5dge:N3 (3.45) BS02 rna ? GO:0002181 ... P0CX41 N/A
    334595 5dge:N4 (3.45) BS01 rna ? GO:0002181 ... P04449 N/A
    334596 5dge:N4 (3.45) BS02 rna ? GO:0002181 ... P04449 N/A
    334597 5dge:N5 (3.45) BS01 rna ? GO:0000027 ... P04456 N/A
    334598 5dge:N5 (3.45) BS02 rna ? GO:0000027 ... P04456 N/A
    334599 5dge:N6 (3.45) BS01 rna ? GO:0002181 ... P05743 N/A
    334600 5dge:N6 (3.45) BS02 rna ? GO:0002181 ... P05743 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).