SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676 1677 1678 1679 1680 1681 1682 1683 1684 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    334601 5dge:N7 (3.45) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    334602 5dge:N8 (3.45) BS01 rna ? GO:0002181 ... P02406 N/A
    334603 5dge:N8 (3.45) BS02 MG ? GO:0002181 ... P02406 N/A
    334604 5dge:N8 (3.45) BS03 MG ? GO:0002181 ... P02406 N/A
    334605 5dge:N9 (3.45) BS01 rna ? GO:0002181 ... P05747 N/A
    334606 5dge:N9 (3.45) BS02 OHX ? GO:0002181 ... P05747 N/A
    334607 5dge:O0 (3.45) BS01 rna ? GO:0002181 ... P14120 N/A
    334608 5dge:O1 (3.45) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    334609 5dge:O1 (3.45) BS02 OHX ? GO:0002181 ... P0C2H8 N/A
    334610 5dge:O2 (3.45) BS01 rna ? GO:0002181 ... P38061 N/A
    334611 5dge:O3 (3.45) BS01 rna ? GO:0000027 ... P05744 N/A
    334612 5dge:O4 (3.45) BS01 rna ? GO:0002181 ... P87262 N/A
    334613 5dge:O4 (3.45) BS02 MG ? GO:0002181 ... P87262 N/A
    334614 5dge:O5 (3.45) BS01 rna ? GO:0000463 ... P0CX84 N/A
    334615 5dge:O5 (3.45) BS02 rna ? GO:0000463 ... P0CX84 N/A
    334616 5dge:O6 (3.45) BS01 rna ? GO:0002181 ... P05745 N/A
    334617 5dge:O7 (3.45) BS01 rna ? GO:0000448 ... P49166 N/A
    334618 5dge:O7 (3.45) BS02 rna ? GO:0000448 ... P49166 N/A
    334619 5dge:O7 (3.45) BS03 OHX ? GO:0000448 ... P49166 N/A
    334620 5dge:O7 (3.45) BS04 OHX ? GO:0000448 ... P49166 N/A
    334621 5dge:O7 (3.45) BS05 MG ? GO:0000448 ... P49166 N/A
    334622 5dge:O7 (3.45) BS06 ZN ? GO:0000448 ... P49166 N/A
    334623 5dge:O7 (3.45) BS07 OHX ? GO:0000448 ... P49166 N/A
    334624 5dge:O8 (3.45) BS01 rna ? GO:0002181 ... P49167 N/A
    334625 5dge:O9 (3.45) BS01 rna ? GO:0002181 ... P04650 N/A
    334626 5dge:O9 (3.45) BS02 rna ? GO:0002181 ... P04650 N/A
    334627 5dge:O9 (3.45) BS03 OHX ? GO:0002181 ... P04650 N/A
    334628 5dge:Q0 (3.45) BS01 rna ? GO:0003735 ... P0CH08 N/A
    334629 5dge:Q0 (3.45) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    334630 5dge:Q2 (3.45) BS01 rna ? GO:0002181 ... P0CX27 N/A
    334631 5dge:Q2 (3.45) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    334632 5dge:Q2 (3.45) BS03 OHX ? GO:0002181 ... P0CX27 N/A
    334633 5dge:Q3 (3.45) BS01 rna ? GO:0002181 ... P0CX25 N/A
    334634 5dge:Q3 (3.45) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    334635 5dge:S0 (3.45) BS01 rna ? GO:0000028 ... P32905 N/A
    334636 5dge:S1 (3.45) BS01 rna ? GO:0000462 ... P33442 N/A
    334637 5dge:S1 (3.45) BS02 OHX ? GO:0000462 ... P33442 N/A
    334638 5dge:S2 (3.45) BS01 rna ? GO:0000054 ... P25443 N/A
    334639 5dge:S3 (3.45) BS01 rna ? GO:0000054 ... P05750 N/A
    334640 5dge:S4 (3.45) BS01 rna ? GO:0002181 ... P0CX35 N/A
    334641 5dge:S5 (3.45) BS01 rna ? GO:0000028 ... P26783 N/A
    334642 5dge:S6 (3.45) BS01 rna ? GO:0000462 ... P0CX37 N/A
    334643 5dge:S7 (3.45) BS01 rna ? GO:0002181 ... P26786 N/A
    334644 5dge:S8 (3.45) BS01 rna ? GO:0000462 ... P0CX39 N/A
    334645 5dge:S8 (3.45) BS02 rna ? GO:0000462 ... P0CX39 N/A
    334646 5dge:S8 (3.45) BS03 OHX ? GO:0000462 ... P0CX39 N/A
    334647 5dge:S9 (3.45) BS01 rna ? GO:0000462 ... O13516 N/A
    334648 5dge:S9 (3.45) BS02 OHX ? GO:0000462 ... O13516 N/A
    334649 5dge:SM (3.45) BS01 rna ? GO:0000723 ... P39015 N/A
    334650 5dge:SM (3.45) BS02 rna ? GO:0000723 ... P39015 N/A
    334651 5dge:SM (3.45) BS03 MG ? GO:0000723 ... P39015 N/A
    334652 5dge:SR (3.45) BS01 rna ? GO:0001965 ... P38011 N/A
    334653 5dge:SR (3.45) BS02 OHX ? GO:0001965 ... P38011 N/A
    334654 5dge:c0 (3.45) BS01 rna ? GO:0000054 ... Q08745 N/A
    334655 5dge:c1 (3.45) BS01 rna ? GO:0000028 ... P0CX47 N/A
    334656 5dge:c2 (3.45) BS01 rna ? GO:0000028 ... P48589 N/A
    334657 5dge:c3 (3.45) BS01 rna ? GO:0000462 ... P05756 N/A
    334658 5dge:c3 (3.45) BS02 rna ? GO:0000462 ... P05756 N/A
    334659 5dge:c3 (3.45) BS03 OHX ? GO:0000462 ... P05756 N/A
    334660 5dge:c4 (3.45) BS01 rna ? GO:0000028 ... P06367 N/A
    334661 5dge:c5 (3.45) BS01 rna ? GO:0000028 ... Q01855 N/A
    334662 5dge:c5 (3.45) BS02 OHX ? GO:0000028 ... Q01855 N/A
    334663 5dge:c5 (3.45) BS03 OHX ? GO:0000028 ... Q01855 N/A
    334664 5dge:c6 (3.45) BS01 rna ? GO:0000462 ... P0CX51 N/A
    334665 5dge:c7 (3.45) BS01 rna ? GO:0000028 ... P02407 N/A
    334666 5dge:c8 (3.45) BS01 rna ? GO:0000054 ... P0CX55 N/A
    334667 5dge:c8 (3.45) BS02 MG ? GO:0000054 ... P0CX55 N/A
    334668 5dge:c8 (3.45) BS03 OHX ? GO:0000054 ... P0CX55 N/A
    334669 5dge:c9 (3.45) BS01 rna ? GO:0000028 ... P07280 N/A
    334670 5dge:c9 (3.45) BS02 MG ? GO:0000028 ... P07280 N/A
    334671 5dge:d0 (3.45) BS01 rna ? GO:0000462 ... P38701 N/A
    334672 5dge:d1 (3.45) BS01 rna ? GO:0000447 ... P0C0V8 N/A
    334673 5dge:d2 (3.45) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    334674 5dge:d3 (3.45) BS01 rna ? GO:0000462 ... P0CX29 N/A
    334675 5dge:d4 (3.45) BS01 rna ? GO:0000462 ... P0CX31 N/A
    334676 5dge:d5 (3.45) BS01 rna ? GO:0002181 ... Q3E792 N/A
    334677 5dge:d6 (3.45) BS01 rna ? GO:0003735 ... P39939 N/A
    334678 5dge:d6 (3.45) BS02 ZN ? GO:0003735 ... P39939 N/A
    334679 5dge:d6 (3.45) BS03 MG ? GO:0003735 ... P39939 N/A
    334680 5dge:d7 (3.45) BS01 rna ? GO:0000028 ... P35997 N/A
    334681 5dge:d8 (3.45) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    334682 5dge:d9 (3.45) BS01 rna ? GO:0002181 ... P41057 N/A
    334683 5dge:d9 (3.45) BS02 ZN ? GO:0002181 ... P41057 N/A
    334684 5dge:d9 (3.45) BS03 OHX ? GO:0002181 ... P41057 N/A
    334685 5dge:e0 (3.45) BS01 rna ? GO:0002181 ... P0CX33 N/A
    334686 5dge:e1 (3.45) BS01 rna ? GO:0003735 ... P05759 N/A
    334687 5dge:f (3.45) BS01 rna ? GO:0002182 ... P23301 N/A
    334688 5dge:l2 (3.45) BS01 rna ? GO:0002181 ... P0CX45 N/A
    334689 5dge:l2 (3.45) BS02 rna ? GO:0002181 ... P0CX45 N/A
    334690 5dge:l3 (3.45) BS01 rna ? GO:0000027 ... P14126 N/A
    334691 5dge:l3 (3.45) BS02 MG ? GO:0000027 ... P14126 N/A
    334692 5dge:l3 (3.45) BS03 MG ? GO:0000027 ... P14126 N/A
    334693 5dge:l3 (3.45) BS04 OHX ? GO:0000027 ... P14126 N/A
    334694 5dge:l4 (3.45) BS01 rna ? GO:0002181 ... P10664 N/A
    334695 5dge:l4 (3.45) BS02 rna ? GO:0002181 ... P10664 N/A
    334696 5dge:l4 (3.45) BS03 OHX ? GO:0002181 ... P10664 N/A
    334697 5dge:l4 (3.45) BS04 OHX ? GO:0002181 ... P10664 N/A
    334698 5dge:l5 (3.45) BS01 rna ? GO:0000027 ... P26321 N/A
    334699 5dge:l5 (3.45) BS02 rna ? GO:0000027 ... P26321 N/A
    334700 5dge:l5 (3.45) BS03 OHX ? GO:0000027 ... P26321 N/A
    334701 5dge:l5 (3.45) BS04 OHX ? GO:0000027 ... P26321 N/A
    334702 5dge:l6 (3.45) BS01 rna ? GO:0000027 ... Q02326 N/A
    334703 5dge:l7 (3.45) BS01 rna ? GO:0000463 ... P05737 N/A
    334704 5dge:l7 (3.45) BS02 rna ? GO:0000463 ... P05737 N/A
    334705 5dge:l8 (3.45) BS01 rna ? GO:0000470 ... P17076 N/A
    334706 5dge:l8 (3.45) BS02 rna ? GO:0000470 ... P17076 N/A
    334707 5dge:l9 (3.45) BS01 rna ? GO:0002181 ... P05738 N/A
    334708 5dge:m0 (3.45) BS01 rna ? GO:0000027 ... P41805 N/A
    334709 5dge:m0 (3.45) BS02 rna ? GO:0000027 ... P41805 N/A
    334710 5dge:m0 (3.45) BS03 OHX ? GO:0000027 ... P41805 N/A
    334711 5dge:m0 (3.45) BS04 OHX ? GO:0000027 ... P41805 N/A
    334712 5dge:m1 (3.45) BS01 rna ? GO:0000027 ... Q3E757 N/A
    334713 5dge:m1 (3.45) BS02 rna ? GO:0000027 ... Q3E757 N/A
    334714 5dge:m1 (3.45) BS03 OHX ? GO:0000027 ... Q3E757 N/A
    334715 5dge:m2 (3.45) BS01 rna ? GO:0000027 ... P0CX53 N/A
    334716 5dge:m3 (3.45) BS01 rna ? GO:0002181 ... Q12690 N/A
    334717 5dge:m3 (3.45) BS02 rna ? GO:0002181 ... Q12690 N/A
    334718 5dge:m4 (3.45) BS01 rna ? GO:0000027 ... P36105 N/A
    334719 5dge:m5 (3.45) BS01 rna ? GO:0002181 ... P05748 N/A
    334720 5dge:m5 (3.45) BS02 rna ? GO:0002181 ... P05748 N/A
    334721 5dge:m5 (3.45) BS03 OHX ? GO:0002181 ... P05748 N/A
    334722 5dge:m5 (3.45) BS04 MG ? GO:0002181 ... P05748 N/A
    334723 5dge:m6 (3.45) BS01 rna ? GO:0000470 ... P26784 N/A
    334724 5dge:m6 (3.45) BS02 MG ? GO:0000470 ... P26784 N/A
    334725 5dge:m7 (3.45) BS01 rna ? GO:0000448 ... P05740 N/A
    334726 5dge:m7 (3.45) BS02 rna ? GO:0000448 ... P05740 N/A
    334727 5dge:m7 (3.45) BS03 OHX ? GO:0000448 ... P05740 N/A
    334728 5dge:m8 (3.45) BS01 rna ? GO:0002181 ... P0CX49 N/A
    334729 5dge:m9 (3.45) BS01 rna ? GO:0002181 ... P0CX82 N/A
    334730 5dge:m9 (3.45) BS02 rna ? GO:0002181 ... P0CX82 N/A
    334731 5dge:m9 (3.45) BS03 OHX ? GO:0002181 ... P0CX82 N/A
    334732 5dge:n0 (3.45) BS01 rna ? GO:0002181 ... P0CX23 N/A
    334733 5dge:n0 (3.45) BS02 rna ? GO:0002181 ... P0CX23 N/A
    334734 5dge:n1 (3.45) BS01 rna ? GO:0002181 ... Q02753 N/A
    334735 5dge:n1 (3.45) BS02 rna ? GO:0002181 ... Q02753 N/A
    334736 5dge:n1 (3.45) BS03 OHX ? GO:0002181 ... Q02753 N/A
    334737 5dge:n2 (3.45) BS01 rna ? GO:0002181 ... P05749 N/A
    334738 5dge:n3 (3.45) BS01 rna ? GO:0002181 ... P0CX41 N/A
    334739 5dge:n3 (3.45) BS02 rna ? GO:0002181 ... P0CX41 N/A
    334740 5dge:n4 (3.45) BS01 rna ? GO:0002181 ... P04449 N/A
    334741 5dge:n4 (3.45) BS02 rna ? GO:0002181 ... P04449 N/A
    334742 5dge:n5 (3.45) BS01 rna ? GO:0000027 ... P04456 N/A
    334743 5dge:n5 (3.45) BS02 rna ? GO:0000027 ... P04456 N/A
    334744 5dge:n6 (3.45) BS01 rna ? GO:0002181 ... P05743 N/A
    334745 5dge:n6 (3.45) BS02 rna ? GO:0002181 ... P05743 N/A
    334746 5dge:n7 (3.45) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    334747 5dge:n8 (3.45) BS01 rna ? GO:0002181 ... P02406 N/A
    334748 5dge:n8 (3.45) BS02 OHX ? GO:0002181 ... P02406 N/A
    334749 5dge:n9 (3.45) BS01 rna ? GO:0002181 ... P05747 N/A
    334750 5dge:n9 (3.45) BS02 OHX ? GO:0002181 ... P05747 N/A
    334751 5dge:o0 (3.45) BS01 rna ? GO:0002181 ... P14120 N/A
    334752 5dge:o1 (3.45) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    334753 5dge:o2 (3.45) BS01 rna ? GO:0002181 ... P38061 N/A
    334754 5dge:o2 (3.45) BS02 MG ? GO:0002181 ... P38061 N/A
    334755 5dge:o3 (3.45) BS01 rna ? GO:0000027 ... P05744 N/A
    334756 5dge:o3 (3.45) BS02 OHX ? GO:0000027 ... P05744 N/A
    334757 5dge:o4 (3.45) BS01 rna ? GO:0002181 ... P87262 N/A
    334758 5dge:o4 (3.45) BS02 MG ? GO:0002181 ... P87262 N/A
    334759 5dge:o5 (3.45) BS01 rna ? GO:0000463 ... P0CX84 N/A
    334760 5dge:o5 (3.45) BS02 rna ? GO:0000463 ... P0CX84 N/A
    334761 5dge:o6 (3.45) BS01 rna ? GO:0002181 ... P05745 N/A
    334762 5dge:o7 (3.45) BS01 rna ? GO:0000448 ... P49166 N/A
    334763 5dge:o7 (3.45) BS02 rna ? GO:0000448 ... P49166 N/A
    334764 5dge:o7 (3.45) BS03 ZN ? GO:0000448 ... P49166 N/A
    334765 5dge:o7 (3.45) BS04 OHX ? GO:0000448 ... P49166 N/A
    334766 5dge:o7 (3.45) BS05 OHX ? GO:0000448 ... P49166 N/A
    334767 5dge:o8 (3.45) BS01 rna ? GO:0002181 ... P49167 N/A
    334768 5dge:o9 (3.45) BS01 rna ? GO:0002181 ... P04650 N/A
    334769 5dge:o9 (3.45) BS02 rna ? GO:0002181 ... P04650 N/A
    334770 5dge:p0 (3.45) BS01 rna ? GO:0000027 ... P05317 N/A
    334771 5dge:q0 (3.45) BS01 rna ? GO:0003735 ... P0CH08 N/A
    334772 5dge:q0 (3.45) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    334773 5dge:q2 (3.45) BS01 rna ? GO:0002181 ... P0CX27 N/A
    334774 5dge:q2 (3.45) BS02 MG ? GO:0002181 ... P0CX27 N/A
    334775 5dge:q2 (3.45) BS03 ZN ? GO:0002181 ... P0CX27 N/A
    334776 5dge:q2 (3.45) BS04 OHX ? GO:0002181 ... P0CX27 N/A
    334777 5dge:q3 (3.45) BS01 rna ? GO:0002181 ... P0CX25 N/A
    334778 5dge:q3 (3.45) BS02 rna ? GO:0002181 ... P0CX25 N/A
    334779 5dge:q3 (3.45) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    334780 5dge:s0 (3.45) BS01 rna ? GO:0000028 ... P32905 N/A
    334781 5dge:s1 (3.45) BS01 rna ? GO:0000462 ... P33442 N/A
    334782 5dge:s1 (3.45) BS02 OHX ? GO:0000462 ... P33442 N/A
    334783 5dge:s2 (3.45) BS01 rna ? GO:0000054 ... P25443 N/A
    334784 5dge:s3 (3.45) BS01 rna ? GO:0000054 ... P05750 N/A
    334785 5dge:s4 (3.45) BS01 rna ? GO:0002181 ... P0CX35 N/A
    334786 5dge:s4 (3.45) BS02 OHX ? GO:0002181 ... P0CX35 N/A
    334787 5dge:s5 (3.45) BS01 rna ? GO:0000028 ... P26783 N/A
    334788 5dge:s5 (3.45) BS02 MG ? GO:0000028 ... P26783 N/A
    334789 5dge:s6 (3.45) BS01 rna ? GO:0000462 ... P0CX37 N/A
    334790 5dge:s7 (3.45) BS01 rna ? GO:0002181 ... P26786 N/A
    334791 5dge:s8 (3.45) BS01 rna ? GO:0000462 ... P0CX39 N/A
    334792 5dge:s8 (3.45) BS02 rna ? GO:0000462 ... P0CX39 N/A
    334793 5dge:s8 (3.45) BS03 OHX ? GO:0000462 ... P0CX39 N/A
    334794 5dge:s9 (3.45) BS01 rna ? GO:0000462 ... O13516 N/A
    334795 5dge:s9 (3.45) BS02 OHX ? GO:0000462 ... O13516 N/A
    334796 5dge:sM (3.45) BS01 rna ? GO:0000723 ... P39015 N/A
    334797 5dge:sM (3.45) BS02 rna ? GO:0000723 ... P39015 N/A
    334798 5dge:sR (3.45) BS01 rna ? GO:0001965 ... P38011 N/A
    334799 5dge:sR (3.45) BS02 OHX ? GO:0001965 ... P38011 N/A
    334800 5dgf:C0 (3.3) BS01 rna N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).