SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    335001 5dgf:s5 (3.3) BS01 rna ? GO:0000028 ... P26783 N/A
    335002 5dgf:s6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 N/A
    335003 5dgf:s7 (3.3) BS01 rna ? GO:0002181 ... P26786 N/A
    335004 5dgf:s8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 N/A
    335005 5dgf:s8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 N/A
    335006 5dgf:s9 (3.3) BS01 rna ? GO:0000462 ... O13516 N/A
    335007 5dgf:sM (3.3) BS01 rna N/A N/A N/A N/A
    335008 5dgf:sM (3.3) BS02 rna N/A N/A N/A N/A
    335009 5dgf:sR (3.3) BS01 rna ? GO:0001965 ... P38011 N/A
    335010 5dgh:A (2.1) BS01 ANP 2.7.4.24 GO:0000829 ... O43314 27460418
    335011 5dgh:A (2.1) BS02 5A3 2.7.4.24 GO:0000829 ... O43314 27460418
    335012 5dgh:A (2.1) BS03 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    335013 5dgh:A (2.1) BS04 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    335014 5dgh:A (2.1) BS05 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    335015 5dgi:A (1.85) BS01 ADP 2.7.4.24 GO:0000829 ... O43314 27460418
    335016 5dgi:A (1.85) BS02 5A2 2.7.4.24 GO:0000829 ... O43314 27460418
    335017 5dgi:A (1.85) BS03 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    335018 5dgi:A (1.85) BS04 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    335019 5dgi:A (1.85) BS05 MG 2.7.4.24 GO:0000829 ... O43314 27460418
    335020 5dgj:A (1.0) BS01 V64 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 26823007
    335021 5dgk:A (2.895) BS01 ANP ? GO:0042802 ... Q0WXP6 27571176
    335022 5dgk:A (2.895) BS02 ANP ? GO:0042802 ... Q0WXP6 27571176
    335023 5dgk:B (2.895) BS01 ANP ? GO:0042802 ... Q0WXP6 27571176
    335024 5dgm:F (2.86) BS01 59Z 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26457482
    335025 5dgm:F (2.86) BS02 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26457482
    335026 5dgn:F (2.08) BS01 59Y 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26381451 MOAD: ic50=1.2uM
    335027 5dgr:A (1.9) BS01 GCS ? GO:0000272 ... Q6LUT2 26621872
    335028 5dgr:B (1.9) BS01 GCS ? GO:0000272 ... Q6LUT2 26621872
    335029 5dgs:F (2.62) BS01 5A7 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26457482
    335030 5dgt:A (1.081) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    335031 5dgt:A (1.081) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    335032 5dgt:A (1.081) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    335033 5dgu:A (1.22) BS01 5B7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 26462551 MOAD: Ki=0.0045nM
    335034 5dgu:B (1.22) BS01 5B7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 26462551
    335035 5dgv:C0 (3.1) BS01 rna ? GO:0000054 ... Q08745 N/A
    335036 5dgv:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 N/A
    335037 5dgv:C2 (3.1) BS01 rna ? GO:0000028 ... P48589 N/A
    335038 5dgv:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 N/A
    335039 5dgv:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 N/A
    335040 5dgv:C4 (3.1) BS01 rna ? GO:0000028 ... P06367 N/A
    335041 5dgv:C5 (3.1) BS01 rna ? GO:0000028 ... Q01855 N/A
    335042 5dgv:C5 (3.1) BS02 rna ? GO:0000028 ... Q01855 N/A
    335043 5dgv:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 N/A
    335044 5dgv:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 N/A
    335045 5dgv:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 N/A
    335046 5dgv:C9 (3.1) BS01 rna ? GO:0000028 ... P07280 N/A
    335047 5dgv:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 N/A
    335048 5dgv:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    335049 5dgv:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 N/A
    335050 5dgv:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 N/A
    335051 5dgv:D5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 N/A
    335052 5dgv:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 N/A
    335053 5dgv:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 N/A
    335054 5dgv:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 N/A
    335055 5dgv:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    335056 5dgv:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 N/A
    335057 5dgv:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 N/A
    335058 5dgv:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 N/A
    335059 5dgv:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 N/A
    335060 5dgv:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 N/A
    335061 5dgv:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 N/A
    335062 5dgv:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 N/A
    335063 5dgv:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 N/A
    335064 5dgv:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 N/A
    335065 5dgv:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 N/A
    335066 5dgv:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 N/A
    335067 5dgv:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 N/A
    335068 5dgv:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 N/A
    335069 5dgv:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 N/A
    335070 5dgv:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 N/A
    335071 5dgv:L8 (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    335072 5dgv:L8 (3.1) BS02 rna N/A GO:0003723 ... N/A N/A
    335073 5dgv:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 N/A
    335074 5dgv:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 N/A
    335075 5dgv:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 N/A
    335076 5dgv:M1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 N/A
    335077 5dgv:M1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 N/A
    335078 5dgv:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 N/A
    335079 5dgv:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 N/A
    335080 5dgv:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 N/A
    335081 5dgv:M5 (3.1) BS01 rna ? GO:0002181 ... P05748 N/A
    335082 5dgv:M5 (3.1) BS02 rna ? GO:0002181 ... P05748 N/A
    335083 5dgv:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 N/A
    335084 5dgv:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 N/A
    335085 5dgv:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 N/A
    335086 5dgv:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 N/A
    335087 5dgv:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 N/A
    335088 5dgv:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 N/A
    335089 5dgv:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 N/A
    335090 5dgv:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 N/A
    335091 5dgv:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 N/A
    335092 5dgv:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 N/A
    335093 5dgv:N2 (3.1) BS01 rna ? GO:0002181 ... P05749 N/A
    335094 5dgv:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 N/A
    335095 5dgv:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 N/A
    335096 5dgv:N4 (3.1) BS01 rna ? GO:0002181 ... P04449 N/A
    335097 5dgv:N4 (3.1) BS02 rna ? GO:0002181 ... P04449 N/A
    335098 5dgv:N5 (3.1) BS01 rna ? GO:0000027 ... P04456 N/A
    335099 5dgv:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 N/A
    335100 5dgv:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 N/A
    335101 5dgv:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 N/A
    335102 5dgv:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    335103 5dgv:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 N/A
    335104 5dgv:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 N/A
    335105 5dgv:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 N/A
    335106 5dgv:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    335107 5dgv:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 N/A
    335108 5dgv:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 N/A
    335109 5dgv:O4 (3.1) BS01 rna ? GO:0002181 ... P87262 N/A
    335110 5dgv:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 N/A
    335111 5dgv:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 N/A
    335112 5dgv:O6 (3.1) BS01 rna ? GO:0002181 ... P05745 N/A
    335113 5dgv:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 N/A
    335114 5dgv:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 N/A
    335115 5dgv:O7 (3.1) BS03 ZN ? GO:0000448 ... P49166 N/A
    335116 5dgv:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 N/A
    335117 5dgv:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 N/A
    335118 5dgv:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 N/A
    335119 5dgv:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 N/A
    335120 5dgv:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    335121 5dgv:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 N/A
    335122 5dgv:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    335123 5dgv:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 N/A
    335124 5dgv:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    335125 5dgv:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 N/A
    335126 5dgv:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 N/A
    335127 5dgv:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 N/A
    335128 5dgv:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 N/A
    335129 5dgv:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 N/A
    335130 5dgv:S5 (3.1) BS01 rna ? GO:0000028 ... P26783 N/A
    335131 5dgv:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 N/A
    335132 5dgv:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 N/A
    335133 5dgv:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 N/A
    335134 5dgv:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 N/A
    335135 5dgv:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 N/A
    335136 5dgv:SM (3.1) BS01 rna N/A N/A N/A N/A
    335137 5dgv:SM (3.1) BS02 rna N/A N/A N/A N/A
    335138 5dgv:SR (3.1) BS01 rna ? GO:0001965 ... P38011 N/A
    335139 5dgv:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 N/A
    335140 5dgv:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 N/A
    335141 5dgv:c2 (3.1) BS01 rna ? GO:0000028 ... P48589 N/A
    335142 5dgv:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 N/A
    335143 5dgv:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 N/A
    335144 5dgv:c4 (3.1) BS01 rna ? GO:0000028 ... P06367 N/A
    335145 5dgv:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 N/A
    335146 5dgv:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 N/A
    335147 5dgv:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 N/A
    335148 5dgv:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 N/A
    335149 5dgv:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 N/A
    335150 5dgv:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 N/A
    335151 5dgv:d1 (3.1) BS01 rna ? GO:0000447 ... P0C0V8 N/A
    335152 5dgv:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    335153 5dgv:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 N/A
    335154 5dgv:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 N/A
    335155 5dgv:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 N/A
    335156 5dgv:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 N/A
    335157 5dgv:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 N/A
    335158 5dgv:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 N/A
    335159 5dgv:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    335160 5dgv:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 N/A
    335161 5dgv:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 N/A
    335162 5dgv:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 N/A
    335163 5dgv:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 N/A
    335164 5dgv:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 N/A
    335165 5dgv:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 N/A
    335166 5dgv:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 N/A
    335167 5dgv:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 N/A
    335168 5dgv:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 N/A
    335169 5dgv:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 N/A
    335170 5dgv:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 N/A
    335171 5dgv:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 N/A
    335172 5dgv:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 N/A
    335173 5dgv:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 N/A
    335174 5dgv:l8 (3.1) BS01 rna N/A GO:0003723 ... N/A N/A
    335175 5dgv:l8 (3.1) BS02 rna N/A GO:0003723 ... N/A N/A
    335176 5dgv:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 N/A
    335177 5dgv:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 N/A
    335178 5dgv:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 N/A
    335179 5dgv:m1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 N/A
    335180 5dgv:m1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 N/A
    335181 5dgv:m2 (3.1) BS01 rna N/A N/A N/A N/A
    335182 5dgv:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 N/A
    335183 5dgv:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 N/A
    335184 5dgv:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 N/A
    335185 5dgv:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 N/A
    335186 5dgv:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 N/A
    335187 5dgv:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 N/A
    335188 5dgv:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 N/A
    335189 5dgv:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 N/A
    335190 5dgv:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 N/A
    335191 5dgv:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 N/A
    335192 5dgv:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 N/A
    335193 5dgv:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 N/A
    335194 5dgv:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 N/A
    335195 5dgv:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 N/A
    335196 5dgv:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 N/A
    335197 5dgv:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 N/A
    335198 5dgv:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 N/A
    335199 5dgv:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 N/A
    335200 5dgv:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).