SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    335401 5dj0:A (2.28) BS01 peptide ? N/A P01857 26996964
    335402 5dj0:A (2.28) BS02 BMA ? N/A P01857 26996964
    335403 5dj0:A (2.28) BS03 GAL ? N/A P01857 26996964
    335404 5dj0:B (2.28) BS01 GAL ? N/A P01857 26996964
    335405 5dj2:A (2.56) BS01 peptide ? N/A P01857 26996964
    335406 5dj2:A (2.56) BS02 BMA ? N/A P01857 26996964
    335407 5dj2:A (2.56) BS03 GAL ? N/A P01857 26996964
    335408 5dj2:B (2.56) BS01 GAL ? N/A P01857 26996964
    335409 5dj3:A (2.227) BS01 5DK ? GO:0006520 ... A0A0X1KHF5 26551990
    335410 5dj3:B (2.227) BS01 5DK ? GO:0006520 ... A0A0X1KHF5 26551990
    335411 5dj3:B (2.227) BS02 MG ? GO:0006520 ... A0A0X1KHF5 26551990
    335412 5dj3:C (2.227) BS01 5DK ? GO:0006520 ... A0A0X1KHF5 26551990
    335413 5dj3:D (2.227) BS01 5DK ? GO:0006520 ... A0A0X1KHF5 26551990
    335414 5dj4:A (2.697) BS01 LEU 1.11.1.- GO:0001932 ... P58004 26586190
    335415 5dj4:B (2.697) BS01 LEU 1.11.1.- GO:0001932 ... P58004 26586190
    335416 5dj4:C (2.697) BS01 LEU 1.11.1.- GO:0001932 ... P58004 26586190
    335417 5dj4:D (2.697) BS01 LEU 1.11.1.- GO:0001932 ... P58004 26586190
    335418 5dj4:E (2.697) BS01 LEU 1.11.1.- GO:0001932 ... P58004 26586190
    335419 5dj5:A (2.4) BS01 GR2 3.1.-.- N/A Q10QA5 26470846 MOAD: ic50=2.5uM
    335420 5dj6:A (2.0) BS01 peptide ? N/A P01857 26996964
    335421 5dj6:A (2.0) BS02 GAL ? N/A P01857 26996964
    335422 5dj6:B (2.0) BS01 GAL ? N/A P01857 26996964
    335423 5dj8:A (2.4) BS01 peptide ? N/A P01857 26996964
    335424 5dj8:A (2.4) BS02 BMA ? N/A P01857 26996964
    335425 5dj8:A (2.4) BS03 GAL ? N/A P01857 26996964
    335426 5dj8:B (2.4) BS01 GAL ? N/A P01857 26996964
    335427 5dj9:A (1.55) BS01 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    335428 5dj9:A (1.55) BS02 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    335429 5dj9:B (1.55) BS01 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    335430 5dj9:B (1.55) BS02 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    335431 5dja:A (2.9) BS01 peptide ? N/A P01857 26996964
    335432 5dja:A (2.9) BS02 BMA ? N/A P01857 26996964
    335433 5dja:A (2.9) BS03 GAL ? N/A P01857 26996964
    335434 5dja:B (2.9) BS01 BMA ? N/A P01857 26996964
    335435 5dja:B (2.9) BS02 GAL ? N/A P01857 26996964
    335436 5djc:A (2.1) BS01 peptide ? N/A P01857 26996964
    335437 5djc:A (2.1) BS02 peptide ? N/A P01857 26996964
    335438 5djc:A (2.1) BS03 GAL ? N/A P01857 26996964
    335439 5djc:B (2.1) BS01 BMA ? N/A P01857 26996964
    335440 5djc:B (2.1) BS02 GAL ? N/A P01857 26996964
    335441 5djc:D (2.1) BS01 peptide ? N/A P01857 26996964
    335442 5djc:D (2.1) BS02 BMA ? N/A P01857 26996964
    335443 5djc:D (2.1) BS03 GAL ? N/A P01857 26996964
    335444 5djc:E (2.1) BS01 GAL ? N/A P01857 26996964
    335445 5djd:A (2.3) BS01 peptide ? N/A P01857 26996964
    335446 5djd:A (2.3) BS02 GAL ? N/A P01857 26996964
    335447 5djd:B (2.3) BS01 GAL ? N/A P01857 26996964
    335448 5djg:A (1.951) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335449 5djg:A (1.951) BS02 LI 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335450 5djg:A (1.951) BS03 A3P 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335451 5djh:A (1.451) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335452 5djh:A (1.451) BS02 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335453 5djh:A (1.451) BS03 AMP 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335454 5djh:A (1.451) BS04 PO4 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335455 5dji:A (1.659) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335456 5dji:A (1.659) BS02 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335457 5dji:A (1.659) BS03 AMP 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335458 5dji:A (1.659) BS04 PO4 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335459 5djj:A (1.501) BS01 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335460 5djj:A (1.501) BS02 MG 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335461 5djj:A (1.501) BS03 PO4 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335462 5djk:A (1.799) BS01 CA 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335463 5djk:A (1.799) BS02 CA 3.1.3.11
    3.1.3.25
    3.1.3.7
    GO:0000103 ... P9WKJ1 26512869
    335464 5djl:A (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    335465 5djl:B (1.8) BS01 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    335466 5djl:B (1.8) BS02 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    335467 5djl:B (1.8) BS03 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    335468 5djp:F (2.4) BS01 5BJ 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26381451
    335469 5djp:F (2.4) BS02 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26381451
    335470 5djq:A (3.2) BS01 peptide 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335471 5djq:A (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335472 5djq:A (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335473 5djq:A (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335474 5djq:A (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335475 5djq:A (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335476 5djq:B (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    335477 5djq:C (3.2) BS01 HEC ? GO:0005886 ... D9IA45 20576851
    335478 5djq:C (3.2) BS02 HEC ? GO:0005886 ... D9IA45 20576851
    335479 5djq:C (3.2) BS03 FC6 ? GO:0005886 ... D9IA45 20576851
    335480 5djq:C (3.2) BS04 FC6 ? GO:0005886 ... D9IA45 20576851
    335481 5djq:D (3.2) BS01 peptide 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335482 5djq:D (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335483 5djq:D (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335484 5djq:D (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335485 5djq:D (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335486 5djq:D (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335487 5djq:E (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    335488 5djq:F (3.2) BS01 HEC ? GO:0005886 ... D9IA45 20576851
    335489 5djq:F (3.2) BS02 HEC ? GO:0005886 ... D9IA45 20576851
    335490 5djq:F (3.2) BS03 FC6 ? GO:0005886 ... D9IA45 20576851
    335491 5djq:F (3.2) BS04 FC6 ? GO:0005886 ... D9IA45 20576851
    335492 5djq:G (3.2) BS01 peptide 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335493 5djq:G (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335494 5djq:G (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335495 5djq:G (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335496 5djq:G (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335497 5djq:G (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335498 5djq:H (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    335499 5djq:I (3.2) BS01 FC6 ? GO:0005886 ... D9IA45 20576851
    335500 5djq:I (3.2) BS02 FC6 ? GO:0005886 ... D9IA45 20576851
    335501 5djq:I (3.2) BS03 HEC ? GO:0005886 ... D9IA45 20576851
    335502 5djq:I (3.2) BS04 HEC ? GO:0005886 ... D9IA45 20576851
    335503 5djq:K (3.2) BS01 peptide 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335504 5djq:K (3.2) BS02 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335505 5djq:K (3.2) BS03 HEM 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335506 5djq:K (3.2) BS04 CU 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335507 5djq:K (3.2) BS05 CA 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335508 5djq:K (3.2) BS06 HEC 7.1.1.9 GO:0004129 ... D9IA43 20576851
    335509 5djq:L (3.2) BS01 HEC ? GO:0009055 ... D9IA44 20576851
    335510 5djq:M (3.2) BS01 FC6 ? GO:0005886 ... D9IA45 20576851
    335511 5djq:M (3.2) BS02 FC6 ? GO:0005886 ... D9IA45 20576851
    335512 5djq:M (3.2) BS03 HEC ? GO:0005886 ... D9IA45 20576851
    335513 5djq:M (3.2) BS04 HEC ? GO:0005886 ... D9IA45 20576851
    335514 5djr:F (2.4) BS01 5BK 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26381451
    335515 5djs:A (2.8) BS01 UDP ? GO:0000166 ... D1CIY5 26491011
    335516 5djs:B (2.8) BS01 UDP ? GO:0000166 ... D1CIY5 26491011
    335517 5djs:C (2.8) BS01 UDP ? GO:0000166 ... D1CIY5 26491011
    335518 5djs:D (2.8) BS01 UDP ? GO:0000166 ... D1CIY5 26491011
    335519 5djt:A (1.4) BS01 FMN 2.7.11.1 N/A O49004 27427858
    335520 5dju:A (2.1) BS01 FMN 2.7.11.1 N/A O49004 27427858
    335521 5dju:C (2.1) BS01 FMN 2.7.11.1 N/A O49004 27427858
    335522 5djv:F (2.3) BS01 5BL 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 26381451
    335523 5djx:A (2.25) BS01 peptide ? N/A P01857 26996964
    335524 5djx:A (2.25) BS02 BMA ? N/A P01857 26996964
    335525 5djx:A (2.25) BS03 GAL ? N/A P01857 26996964
    335526 5djx:B (2.25) BS01 BMA ? N/A P01857 26996964
    335527 5djx:B (2.25) BS02 GAL ? N/A P01857 26996964
    335528 5djx:D (2.25) BS01 peptide ? N/A P01857 26996964
    335529 5djx:D (2.25) BS02 peptide ? N/A P01857 26996964
    335530 5djx:D (2.25) BS03 BMA ? N/A P01857 26996964
    335531 5djx:D (2.25) BS04 GAL ? N/A P01857 26996964
    335532 5djx:E (2.25) BS01 BMA ? N/A P01857 26996964
    335533 5djy:A (2.15) BS01 peptide ? N/A P01857 26996964
    335534 5djy:A (2.15) BS02 GAL ? N/A P01857 26996964
    335535 5djy:B (2.15) BS01 GAL ? N/A P01857 26996964
    335536 5djz:A (1.9) BS01 peptide ? N/A P01857 26996964
    335537 5djz:A (1.9) BS02 GAL ? N/A P01857 26996964
    335538 5dk0:A (2.3) BS01 peptide ? N/A P01857 26996964
    335539 5dk0:A (2.3) BS02 GAL ? N/A P01857 26996964
    335540 5dk0:B (2.3) BS01 GAL ? N/A P01857 26996964
    335541 5dk2:A (2.6) BS01 peptide ? N/A P01857 26996964
    335542 5dk2:A (2.6) BS02 BMA ? N/A P01857 26996964
    335543 5dk2:A (2.6) BS03 GAL ? N/A P01857 26996964
    335544 5dk2:B (2.6) BS01 BMA ? N/A P01857 26996964
    335545 5dk2:B (2.6) BS02 GAL ? N/A P01857 26996964
    335546 5dk2:E (2.6) BS01 peptide ? N/A P01857 26996964
    335547 5dk3:B (2.28) BS01 BMA N/A N/A N/A 26595420
    335548 5dk3:B (2.28) BS02 FUC N/A N/A N/A 26595420
    335549 5dk3:B (2.28) BS03 GLC N/A N/A N/A 26595420
    335550 5dk3:B (2.28) BS04 FRU N/A N/A N/A 26595420
    335551 5dk3:B (2.28) BS05 GLC N/A N/A N/A 26595420
    335552 5dk3:G (2.28) BS01 GLC N/A N/A N/A 26595420
    335553 5dk3:G (2.28) BS02 FRU N/A N/A N/A 26595420
    335554 5dk3:G (2.28) BS03 GLC N/A N/A N/A 26595420
    335555 5dk3:G (2.28) BS04 FRU N/A N/A N/A 26595420
    335556 5dk4:A (1.9) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 26555258
    335557 5dk4:A (1.9) BS02 5BX 6.1.1.2 GO:0000166 ... P00953 26555258 MOAD: Ki=2nM
    335558 5dk5:A (2.1) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 27529560
    335559 5dk5:A (2.1) BS02 MG 3.1.-.- GO:0000175 ... Q10905 27529560
    335560 5dk5:B (2.1) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 27529560
    335561 5dk6:A (2.27) BS01 ADE 3.2.2.9 GO:0003824 ... Q47UY5 N/A
    335562 5dk9:A (2.28) BS01 peptide ? N/A P03372 27107013
    335563 5dk9:A (2.28) BS02 5CC ? N/A P03372 27107013
    335564 5dk9:B (2.28) BS01 peptide ? N/A P03372 27107013
    335565 5dk9:B (2.28) BS02 5CC ? N/A P03372 27107013
    335566 5dka:A (1.55) BS01 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335567 5dka:A (1.55) BS02 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335568 5dka:A (1.55) BS03 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335569 5dka:B (1.55) BS01 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335570 5dka:B (1.55) BS02 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335571 5dka:B (1.55) BS03 ZN 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335572 5dka:B (1.55) BS04 MG 2.3.2.27 GO:0000139 ... Q96EQ8 27411375
    335573 5dkb:A (2.4) BS01 peptide ? N/A P03372 27107013
    335574 5dkb:A (2.4) BS02 5C9 ? N/A P03372 27107013
    335575 5dkb:A (2.4) BS03 5C9 ? N/A P03372 27107013
    335576 5dkb:B (2.4) BS01 peptide ? N/A P03372 27107013
    335577 5dkb:B (2.4) BS02 5C9 ? N/A P03372 27107013
    335578 5dkc:A (1.6) BS01 5BW 3.6.4.- GO:0006338 ... P51531 N/A
    335579 5dkd:A (2.0) BS01 5BW 3.6.4.- GO:0006338 ... P51532 N/A BindingDB: Kd=89nM
    335580 5dkd:B (2.0) BS01 5BW 3.6.4.- GO:0006338 ... P51532 N/A BindingDB: Kd=89nM
    335581 5dke:A (2.6) BS01 peptide ? N/A P03372 27107013
    335582 5dke:A (2.6) BS02 5C8 ? N/A P03372 27107013
    335583 5dke:B (2.6) BS01 peptide ? N/A P03372 27107013
    335584 5dke:B (2.6) BS02 5C8 ? N/A P03372 27107013
    335585 5dkf:A (1.94) BS01 MN ? GO:0000160 ... P0AE68 26569142
    335586 5dkf:A (1.94) BS02 BEF ? GO:0000160 ... P0AE68 26569142
    335587 5dkf:B (1.94) BS01 MN ? GO:0000160 ... P0AE68 26569142
    335588 5dkf:B (1.94) BS02 BEF ? GO:0000160 ... P0AE68 26569142
    335589 5dkg:A (2.15) BS01 peptide ? N/A P03372 27107013
    335590 5dkg:A (2.15) BS02 5C7 ? N/A P03372 27107013
    335591 5dkg:B (2.15) BS01 peptide ? N/A P03372 27107013
    335592 5dkg:B (2.15) BS02 5C7 ? N/A P03372 27107013
    335593 5dkh:A (1.7) BS01 5C0 3.6.4.- GO:0006338 ... P51531 N/A BindingDB: Kd=37nM
    335594 5dkh:B (1.7) BS01 5C0 3.6.4.- GO:0006338 ... P51531 N/A BindingDB: Kd=37nM
    335595 5dki:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26471124
    335596 5dki:H (2.8) BS01 5BZ 3.4.25.1 GO:0004298 ... P25043 26471124
    335597 5dki:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26471124
    335598 5dki:K (2.8) BS01 5BZ 3.4.25.1 GO:0004298 ... P30656 26471124
    335599 5dki:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 26471124
    335600 5dki:N (2.8) BS01 5BZ 3.4.25.1 GO:0000502 ... P38624 26471124

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).