SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    335801 5dlt:A (1.6) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    335802 5dlv:A (2.0) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335803 5dlv:A (2.0) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335804 5dlv:A (2.0) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335805 5dlv:A (2.0) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    335806 5dlv:A (2.0) BS05 5D5 3.1.4.39 GO:0001953 ... Q64610 27075612 MOAD: ic50=10.4uM
    335807 5dlv:B (2.0) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335808 5dlv:B (2.0) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335809 5dlv:B (2.0) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335810 5dlv:B (2.0) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    335811 5dlv:B (2.0) BS05 5D5 3.1.4.39 GO:0001953 ... Q64610 27075612 MOAD: ic50=10.4uM
    335812 5dlw:A (1.8) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335813 5dlw:A (1.8) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335814 5dlw:A (1.8) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335815 5dlw:A (1.8) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 27075612
    335816 5dlw:A (1.8) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 27075612
    335817 5dlw:A (1.8) BS06 NKP 3.1.4.39 GO:0001953 ... Q64610 27075612
    335818 5dlw:A (1.8) BS07 5D5 3.1.4.39 GO:0001953 ... Q64610 27075612 MOAD: Ki=9uM
    335819 5dlx:A (1.9) BS01 5D2 ? N/A O60885 27219844 MOAD: Kd=2uM
    335820 5dly:A (1.5) BS01 5D7 ? GO:0008168 ... A7Z2A9 25635336
    335821 5dly:A (1.5) BS02 SAH ? GO:0008168 ... A7Z2A9 25635336
    335822 5dlz:A (1.7) BS01 5D1 ? N/A O60885 27219844 MOAD: Kd=1.8uM
    335823 5dm0:A (1.75) BS01 SAH ? GO:0008168 ... A7Z2A9 25635336
    335824 5dm0:A (1.75) BS02 5D8 ? GO:0008168 ... A7Z2A9 25635336
    335825 5dm0:B (1.75) BS01 SAH ? GO:0008168 ... A7Z2A9 25635336
    335826 5dm0:B (1.75) BS02 5D8 ? GO:0008168 ... A7Z2A9 25635336
    335827 5dm1:A (1.8) BS01 5D7 N/A N/A N/A 25635336
    335828 5dm1:A (1.8) BS02 SAH N/A N/A N/A 25635336
    335829 5dm2:A (1.5) BS01 SAH N/A N/A N/A 25635336
    335830 5dm2:A (1.5) BS02 5D9 N/A N/A N/A 25635336
    335831 5dm3:A (2.6) BS01 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335832 5dm3:B (2.6) BS01 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335833 5dm3:C (2.6) BS01 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335834 5dm3:D (2.6) BS01 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335835 5dm3:D (2.6) BS02 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335836 5dm3:E (2.6) BS01 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335837 5dm3:F (2.6) BS01 ADP 6.3.1.2 GO:0000166 ... Q1QZR8 N/A
    335838 5dm4:A (1.75) BS01 SAH N/A N/A N/A 25635336
    335839 5dm4:A (1.75) BS02 5DA N/A N/A N/A 25635336
    335840 5dm6:0 (2.9) BS01 rna ? GO:0000049 ... Q9RSS8 26464437
    335841 5dm6:1 (2.9) BS01 rna ? GO:0003735 ... Q9RSS4 26464437
    335842 5dm6:2 (2.9) BS01 rna ? GO:0003735 ... Q9RSH2 26464437
    335843 5dm6:3 (2.9) BS01 rna ? GO:0003735 ... Q9RSW6 26464437
    335844 5dm6:A (2.9) BS01 rna ? GO:0002181 ... Q9RXJ9 26464437
    335845 5dm6:B (2.9) BS01 rna ? GO:0003735 ... Q9RXK2 26464437
    335846 5dm6:C (2.9) BS01 rna ? GO:0003735 ... Q9RXK1 26464437
    335847 5dm6:D (2.9) BS01 rna ? GO:0000049 ... Q9RXJ0 26464437
    335848 5dm6:D (2.9) BS02 rna ? GO:0000049 ... Q9RXJ0 26464437
    335849 5dm6:E (2.9) BS01 rna ? GO:0002181 ... Q9RSL3 26464437
    335850 5dm6:F (2.9) BS01 rna ? GO:0003735 ... Q9RSS7 26464437
    335851 5dm6:G (2.9) BS01 rna ? GO:0003735 ... Q9RXY1 26464437
    335852 5dm6:H (2.9) BS01 rna ? GO:0003735 ... Q9RXJ2 26464437
    335853 5dm6:I (2.9) BS01 rna ? GO:0003735 ... Q9RSK9 26464437
    335854 5dm6:J (2.9) BS01 rna ? GO:0000049 ... Q9RXJ5 26464437
    335855 5dm6:J (2.9) BS02 rna ? GO:0000049 ... Q9RXJ5 26464437
    335856 5dm6:K (2.9) BS01 rna ? GO:0003735 ... Q9RSJ5 26464437
    335857 5dm6:L (2.9) BS01 rna ? GO:0003735 ... Q9RSL2 26464437
    335858 5dm6:L (2.9) BS02 rna ? GO:0003735 ... Q9RSL2 26464437
    335859 5dm6:M (2.9) BS01 rna ? GO:0003735 ... Q9RWB4 26464437
    335860 5dm6:N (2.9) BS01 rna ? GO:0000027 ... Q9RSW7 26464437
    335861 5dm6:O (2.9) BS01 rna ? GO:0003723 ... Q9RY64 26464437
    335862 5dm6:P (2.9) BS01 rna ? GO:0003735 ... Q9RXJ7 26464437
    335863 5dm6:Q (2.9) BS01 rna ? GO:0003735 ... Q9RXK0 26464437
    335864 5dm6:R (2.9) BS01 rna ? GO:0003723 ... Q9RXJ1 26464437
    335865 5dm6:S (2.9) BS01 rna ? GO:0003735 ... Q9RX88 26464437
    335866 5dm6:S (2.9) BS02 rna ? GO:0003735 ... Q9RX88 26464437
    335867 5dm6:T (2.9) BS01 rna ? GO:0000049 ... Q9RY65 26464437
    335868 5dm6:U (2.9) BS01 rna ? GO:0003735 ... Q9RRG8 26464437
    335869 5dm6:V (2.9) BS01 rna ? GO:0003735 ... Q9RXJ4 26464437
    335870 5dm6:W (2.9) BS01 rna ? GO:0003735 ... Q9RSL0 26464437
    335871 5dm6:W (2.9) BS02 rna ? GO:0003735 ... Q9RSL0 26464437
    335872 5dm6:Z (2.9) BS01 rna ? GO:0003735 ... P49228 26464437
    335873 5dm7:0 (3.0) BS01 rna ? GO:0000049 ... Q9RSS8 26464437
    335874 5dm7:1 (3.0) BS01 rna ? GO:0003735 ... Q9RSS4 26464437
    335875 5dm7:2 (3.0) BS01 rna ? GO:0003735 ... Q9RSH2 26464437
    335876 5dm7:3 (3.0) BS01 rna ? GO:0003735 ... Q9RSW6 26464437
    335877 5dm7:A (3.0) BS01 rna ? GO:0002181 ... Q9RXJ9 26464437
    335878 5dm7:B (3.0) BS01 rna ? GO:0003735 ... Q9RXK2 26464437
    335879 5dm7:C (3.0) BS01 rna ? GO:0003735 ... Q9RXK1 26464437
    335880 5dm7:D (3.0) BS01 rna ? GO:0000049 ... Q9RXJ0 26464437
    335881 5dm7:D (3.0) BS02 rna ? GO:0000049 ... Q9RXJ0 26464437
    335882 5dm7:E (3.0) BS01 rna ? GO:0002181 ... Q9RSL3 26464437
    335883 5dm7:F (3.0) BS01 rna ? GO:0003735 ... Q9RSS7 26464437
    335884 5dm7:G (3.0) BS01 rna ? GO:0003735 ... Q9RXY1 26464437
    335885 5dm7:H (3.0) BS01 rna ? GO:0003735 ... Q9RXJ2 26464437
    335886 5dm7:I (3.0) BS01 rna ? GO:0003735 ... Q9RSK9 26464437
    335887 5dm7:J (3.0) BS01 rna ? GO:0000049 ... Q9RXJ5 26464437
    335888 5dm7:J (3.0) BS02 rna ? GO:0000049 ... Q9RXJ5 26464437
    335889 5dm7:K (3.0) BS01 rna ? GO:0003735 ... Q9RSJ5 26464437
    335890 5dm7:L (3.0) BS01 rna ? GO:0003735 ... Q9RSL2 26464437
    335891 5dm7:L (3.0) BS02 rna ? GO:0003735 ... Q9RSL2 26464437
    335892 5dm7:M (3.0) BS01 rna ? GO:0003735 ... Q9RWB4 26464437
    335893 5dm7:N (3.0) BS01 rna ? GO:0000027 ... Q9RSW7 26464437
    335894 5dm7:O (3.0) BS01 rna ? GO:0003723 ... Q9RY64 26464437
    335895 5dm7:P (3.0) BS01 rna ? GO:0003735 ... Q9RXJ7 26464437
    335896 5dm7:Q (3.0) BS01 rna ? GO:0003735 ... Q9RXK0 26464437
    335897 5dm7:R (3.0) BS01 rna ? GO:0003723 ... Q9RXJ1 26464437
    335898 5dm7:S (3.0) BS01 rna ? GO:0003735 ... Q9RX88 26464437
    335899 5dm7:S (3.0) BS02 rna ? GO:0003735 ... Q9RX88 26464437
    335900 5dm7:T (3.0) BS01 rna ? GO:0000049 ... Q9RY65 26464437
    335901 5dm7:U (3.0) BS01 rna ? GO:0003735 ... Q9RRG8 26464437
    335902 5dm7:V (3.0) BS01 rna ? GO:0003735 ... Q9RXJ4 26464437
    335903 5dm7:W (3.0) BS01 rna ? GO:0003735 ... Q9RSL0 26464437
    335904 5dm7:W (3.0) BS02 rna ? GO:0003735 ... Q9RSL0 26464437
    335905 5dm7:Z (3.0) BS01 rna ? GO:0003735 ... P49228 26464437
    335906 5dmc:A (2.403) BS01 peptide ? N/A P03372 27107013
    335907 5dmc:A (2.403) BS02 5DH ? N/A P03372 27107013
    335908 5dmc:B (2.403) BS01 peptide ? N/A P03372 27107013
    335909 5dmc:B (2.403) BS02 5DH ? N/A P03372 27107013
    335910 5dmf:A (2.4) BS01 peptide ? N/A P03372 27107013
    335911 5dmf:A (2.4) BS02 5DG ? N/A P03372 27107013
    335912 5dmf:B (2.4) BS01 peptide ? N/A P03372 27107013
    335913 5dmf:B (2.4) BS02 5DG ? N/A P03372 27107013
    335914 5dmg:C (2.5) BS01 peptide N/A N/A N/A 26637054
    335915 5dmg:D (2.5) BS01 peptide N/A N/A N/A 26637054
    335916 5dmg:E (2.5) BS01 peptide N/A N/A N/A 26637054
    335917 5dmg:F (2.5) BS01 peptide N/A N/A N/A 26637054
    335918 5dmg:H (2.5) BS01 peptide N/A N/A N/A 26637054
    335919 5dmg:L (2.5) BS01 peptide N/A N/A N/A 26637054
    335920 5dmh:A (1.8) BS01 ADP 2.7.1.217 GO:0005524 ... Q0KBC8 N/A
    335921 5dmm:A (1.779) BS01 ZN 2.1.1.10 GO:0006974 ... Q47690 26564203
    335922 5dmm:A (1.779) BS02 ZN 2.1.1.10 GO:0006974 ... Q47690 26564203
    335923 5dmp:A (1.793) BS01 VN4 ? N/A D1Z0H7 26405198
    335924 5dms:A (1.89999) BS01 peptide 2.7.11.21 N/A Q07832 26459104
    335925 5dms:C (1.89999) BS01 peptide 2.7.11.21 N/A Q07832 26459104
    335926 5dmv:C (2.499) BS01 peptide 2.7.11.21 N/A Q07832 26459104
    335927 5dmy:A (1.95) BS01 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    335928 5dmy:A (1.95) BS02 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    335929 5dmy:B (1.95) BS01 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    335930 5dmy:B (1.95) BS02 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    335931 5dmy:C (1.95) BS01 MG 3.2.1.23 GO:0004553 ... D4QAP3 N/A
    335932 5dmz:A (2.4) BS01 ADP 2.7.11.1 GO:0004672 ... O43683 26658523
    335933 5dmz:A (2.4) BS02 MG 2.7.11.1 GO:0004672 ... O43683 26658523
    335934 5dmz:B (2.4) BS01 ADP 2.7.11.1 GO:0004672 ... O43683 26658523
    335935 5dmz:B (2.4) BS02 MG 2.7.11.1 GO:0004672 ... O43683 26658523
    335936 5dn1:A (1.953) BS01 AMZ 5.3.1.16
    5.3.1.24
    GO:0000105 ... P16250 26929404
    335937 5dn2:A (1.95) BS01 peptide ? N/A O60462 26991001
    335938 5dn2:C (1.95) BS01 peptide ? N/A O60462 26991001
    335939 5dn2:C (1.95) BS02 peptide ? N/A O60462 26991001
    335940 5dn2:D (1.95) BS01 peptide ? N/A O60462 26991001
    335941 5dn2:D (1.95) BS02 peptide ? N/A O60462 26991001
    335942 5dn3:A (2.05) BS01 MG 2.7.11.1 GO:0000212 ... O14965 27339427
    335943 5dn3:A (2.05) BS02 5DN 2.7.11.1 GO:0000212 ... O14965 27339427 MOAD: Kd=3.77uM
    335944 5dn3:A (2.05) BS03 ATP 2.7.11.1 GO:0000212 ... O14965 27339427
    335945 5dn6:A (3.98) BS01 ATP 7.1.2.2 GO:0005524 ... A1B8N8 26460036
    335946 5dn6:B (3.98) BS01 ADP 7.1.2.2 GO:0005524 ... A1B8N8 26460036
    335947 5dn6:C (3.98) BS01 ATP 7.1.2.2 GO:0005524 ... A1B8N8 26460036
    335948 5dn6:D (3.98) BS01 ATP 7.1.2.2 GO:0005524 ... A1B8P0 26460036
    335949 5dn6:D (3.98) BS02 MG 7.1.2.2 GO:0005524 ... A1B8P0 26460036
    335950 5dn6:F (3.98) BS01 ATP 7.1.2.2 GO:0005524 ... A1B8P0 26460036
    335951 5dn6:F (3.98) BS02 MG 7.1.2.2 GO:0005524 ... A1B8P0 26460036
    335952 5dn8:A (1.76) BS01 GDP ? GO:0005525 ... Q83C83 N/A
    335953 5dn8:A (1.76) BS02 GDP ? GO:0005525 ... Q83C83 N/A
    335954 5dn9:A (1.5) BS01 NAD 1.17.1.9 GO:0000166 ... A0A0A1EQY0 27100912 MOAD: Kd=92uM
    335955 5dn9:A (1.5) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 27100912
    335956 5dn9:B (1.5) BS01 NAD 1.17.1.9 GO:0000166 ... A0A0A1EQY0 27100912 MOAD: Kd=92uM
    335957 5dn9:B (1.5) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 27100912
    335958 5dnc:A (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335959 5dnc:B (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335960 5dnc:C (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335961 5dnc:D (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335962 5dnd:A (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335963 5dnd:B (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335964 5dnd:C (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335965 5dnd:D (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335966 5dne:A (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335967 5dne:B (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335968 5dne:C (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335969 5dne:D (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    335970 5dnf:A (2.549) BS01 BGC ? GO:0002407 ... P13501 27091995
    335971 5dnf:A (2.549) BS02 GLA ? GO:0002407 ... P13501 27091995
    335972 5dnf:C (2.549) BS01 IDS ? GO:0002407 ... P13501 27091995
    335973 5dnf:C (2.549) BS02 BGC ? GO:0002407 ... P13501 27091995
    335974 5dnf:D (2.549) BS01 SGN ? GO:0002407 ... P13501 27091995
    335975 5dnf:D (2.549) BS02 IDS ? GO:0002407 ... P13501 27091995
    335976 5dnf:D (2.549) BS03 BGC ? GO:0002407 ... P13501 27091995
    335977 5dnf:F (2.549) BS01 GLA ? GO:0002407 ... P13501 27091995
    335978 5dnf:F (2.549) BS02 BGC ? GO:0002407 ... P13501 27091995
    335979 5dnf:G (2.549) BS01 BGC ? GO:0002407 ... P13501 27091995
    335980 5dnf:H (2.549) BS01 BGC ? GO:0002407 ... P13501 27091995
    335981 5dnf:H (2.549) BS02 GLA ? GO:0002407 ... P13501 27091995
    335982 5dnf:I (2.549) BS01 IDS ? GO:0002407 ... P13501 27091995
    335983 5dnf:I (2.549) BS02 BGC ? GO:0002407 ... P13501 27091995
    335984 5dnj:A (2.3) BS01 peptide 2.7.11.21 N/A Q07832 26459104
    335985 5dnk:A (1.9) BS01 SAH ? N/A O05979 27474738
    335986 5dnk:B (1.9) BS01 SAH ? N/A O05979 27474738
    335987 5dnl:A (1.53) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    335988 5dnl:A (1.53) BS02 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    335989 5dnl:A (1.53) BS03 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    335990 5dnl:B (1.53) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    335991 5dnl:B (1.53) BS02 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    335992 5dnl:B (1.53) BS03 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    335993 5dnl:C (1.53) BS01 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    335994 5dnl:C (1.53) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    335995 5dnl:C (1.53) BS03 5DL 4.2.1.19 GO:0000105 ... P58880 27717128
    335996 5dnm:A (2.81) BS01 dna ? GO:0000786 ... P84233 28358030
    335997 5dnm:A (2.81) BS02 dna ? GO:0000786 ... P84233 28358030
    335998 5dnm:B (2.81) BS01 dna ? GO:0000786 ... P62799 28358030
    335999 5dnm:B (2.81) BS02 dna ? GO:0000786 ... P62799 28358030
    336000 5dnm:C (2.81) BS01 dna ? GO:0000786 ... P06897 28358030

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).