SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    336001 5dnm:C (2.81) BS02 dna ? GO:0000786 ... P06897 28358030
    336002 5dnm:D (2.81) BS01 dna ? GO:0000786 ... P02281 28358030
    336003 5dnm:D (2.81) BS02 dna ? GO:0000786 ... P02281 28358030
    336004 5dnm:E (2.81) BS01 dna ? GO:0000786 ... P84233 28358030
    336005 5dnm:E (2.81) BS02 dna ? GO:0000786 ... P84233 28358030
    336006 5dnm:F (2.81) BS01 dna ? GO:0000786 ... P62799 28358030
    336007 5dnm:F (2.81) BS02 dna ? GO:0000786 ... P62799 28358030
    336008 5dnm:G (2.81) BS01 dna ? GO:0000786 ... P06897 28358030
    336009 5dnm:G (2.81) BS02 dna ? GO:0000786 ... P06897 28358030
    336010 5dnm:G (2.81) BS03 RAX ? GO:0000786 ... P06897 28358030
    336011 5dnm:H (2.81) BS01 dna ? GO:0000786 ... P02281 28358030
    336012 5dnm:H (2.81) BS02 dna ? GO:0000786 ... P02281 28358030
    336013 5dnm:H (2.81) BS03 RAX ? GO:0000786 ... P02281 28358030
    336014 5dnn:A (2.8) BS01 dna ? GO:0000786 ... P84233 28358030
    336015 5dnn:A (2.8) BS02 dna ? GO:0000786 ... P84233 28358030
    336016 5dnn:B (2.8) BS01 dna ? GO:0000786 ... P62799 28358030
    336017 5dnn:B (2.8) BS02 dna ? GO:0000786 ... P62799 28358030
    336018 5dnn:C (2.8) BS01 dna ? GO:0000786 ... P06897 28358030
    336019 5dnn:C (2.8) BS02 dna ? GO:0000786 ... P06897 28358030
    336020 5dnn:D (2.8) BS01 dna ? GO:0000786 ... P02281 28358030
    336021 5dnn:D (2.8) BS02 dna ? GO:0000786 ... P02281 28358030
    336022 5dnn:E (2.8) BS01 dna ? GO:0000786 ... P84233 28358030
    336023 5dnn:E (2.8) BS02 dna ? GO:0000786 ... P84233 28358030
    336024 5dnn:F (2.8) BS01 dna ? GO:0000786 ... P62799 28358030
    336025 5dnn:F (2.8) BS02 dna ? GO:0000786 ... P62799 28358030
    336026 5dnn:G (2.8) BS01 dna ? GO:0000786 ... P06897 28358030
    336027 5dnn:G (2.8) BS02 dna ? GO:0000786 ... P06897 28358030
    336028 5dnn:G (2.8) BS03 RAX ? GO:0000786 ... P06897 28358030
    336029 5dnn:H (2.8) BS01 dna ? GO:0000786 ... P02281 28358030
    336030 5dnn:H (2.8) BS02 dna ? GO:0000786 ... P02281 28358030
    336031 5dnn:H (2.8) BS03 RAX ? GO:0000786 ... P02281 28358030
    336032 5dno:A (1.8) BS01 rna ? GO:0003723 ... O74958 26673708
    336033 5dnr:A (1.95) BS01 MG 2.7.11.1 GO:0000212 ... O14965 27339427
    336034 5dnr:A (1.95) BS02 ATP 2.7.11.1 GO:0000212 ... O14965 27339427
    336035 5dnr:A (1.95) BS03 MG 2.7.11.1 GO:0000212 ... O14965 27339427
    336036 5dnu:A (1.2) BS01 KKN ? N/A A0A0M3PN85 27507097 MOAD: Kd=77.6uM
    336037 5dnx:A (1.8) BS01 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    336038 5dnx:A (1.8) BS02 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    336039 5dnx:A (1.8) BS03 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    336040 5dnx:B (1.8) BS01 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    336041 5dnx:B (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    336042 5dnx:B (1.8) BS03 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    336043 5dnx:C (1.8) BS01 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    336044 5dnx:C (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P58880 27717128
    336045 5dnx:C (1.8) BS03 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    336046 5dny:A (3.11) BS01 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    336047 5dny:A (3.11) BS02 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    336048 5dny:B (3.11) BS01 dna ? GO:0006302 ... Q58718 26717941
    336049 5dny:B (3.11) BS02 AGS ? GO:0006302 ... Q58718 26717941
    336050 5dny:B (3.11) BS03 AGS ? GO:0006302 ... Q58718 26717941
    336051 5dny:C (3.11) BS01 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    336052 5dny:C (3.11) BS02 MG 3.1.-.- GO:0000403 ... Q58719 26717941
    336053 5dny:D (3.11) BS01 dna ? GO:0006302 ... Q58718 26717941
    336054 5dny:D (3.11) BS02 dna ? GO:0006302 ... Q58718 26717941
    336055 5dny:D (3.11) BS03 AGS ? GO:0006302 ... Q58718 26717941
    336056 5dny:D (3.11) BS04 AGS ? GO:0006302 ... Q58718 26717941
    336057 5do4:H (1.859) BS01 rna 3.4.21.5 GO:0004252 ... P00734 27566147
    336058 5do4:H (1.859) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 27566147
    336059 5do4:H (1.859) BS03 CA 3.4.21.5 GO:0004252 ... P00734 27566147
    336060 5do4:L (1.859) BS01 rna 3.4.21.5 GO:0004252 ... P00734 27566147
    336061 5do8:A (1.8) BS01 BGC 3.2.1.10 GO:0004556 ... Q8YAE6 27819654
    336062 5do8:B (1.8) BS01 BGC 3.2.1.10 GO:0004556 ... Q8YAE6 27819654
    336063 5do8:C (1.8) BS01 BGC 3.2.1.10 GO:0004556 ... Q8YAE6 27819654
    336064 5do9:A (2.6) BS01 GDP ? GO:0001664 ... P21279 26755720
    336065 5do9:A (2.6) BS02 ALF ? GO:0001664 ... P21279 26755720
    336066 5do9:A (2.6) BS03 MG ? GO:0001664 ... P21279 26755720
    336067 5do9:C (2.6) BS01 GDP ? GO:0001664 ... P21279 26755720
    336068 5do9:C (2.6) BS02 ALF ? GO:0001664 ... P21279 26755720
    336069 5do9:C (2.6) BS03 MG ? GO:0001664 ... P21279 26755720
    336070 5do9:E (2.6) BS01 GDP ? GO:0001664 ... P21279 26755720
    336071 5do9:E (2.6) BS02 ALF ? GO:0001664 ... P21279 26755720
    336072 5do9:E (2.6) BS03 MG ? GO:0001664 ... P21279 26755720
    336073 5dob:A (2.47) BS01 ZN ? GO:0046765 ... P16794 26511021
    336074 5dob:A (2.47) BS02 CA ? GO:0046765 ... P16794 26511021
    336075 5doc:A (1.94) BS01 ZN ? GO:0046765 ... P16794 26511021
    336076 5doc:B (1.94) BS01 ZN ? GO:0046765 ... P16794 26511021
    336077 5doe:B (3.0) BS01 ZN ? GO:0046765 ... P16794 26511021
    336078 5dog:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003
    336079 5dog:A (1.7) BS02 5DT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003
    336080 5doh:A (1.05) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003
    336081 5doh:A (1.05) BS02 5DU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003 MOAD: Kd=32nM
    336082 5doh:B (1.05) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003
    336083 5doh:B (1.05) BS02 5DU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003 MOAD: Kd=32nM
    336084 5dok:A (2.3) BS01 MG ? N/A Q6JXI5 26551074
    336085 5dok:B (2.3) BS01 MG ? N/A Q6JXI5 26551074
    336086 5doo:A (3.133) BS01 CA ? GO:0046872 ... Q68XQ5 27474738
    336087 5doq:A (3.05) BS01 HEB ? GO:0005886 ... A4IKP6 27126043
    336088 5doq:A (3.05) BS02 HEB ? GO:0005886 ... A4IKP6 27126043
    336089 5doq:A (3.05) BS03 HDD ? GO:0005886 ... A4IKP6 27126043
    336090 5dor:B (2.5) BS01 ZN 2.7.7.-
    3.1.-.-
    GO:0003677 ... P36932 26453836
    336091 5dos:A (2.98) BS01 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    336092 5dos:A (2.98) BS02 5DN 2.7.11.1 GO:0004672 ... O14965 27339427
    336093 5dos:A (2.98) BS03 ATP 2.7.11.1 GO:0004672 ... O14965 27339427
    336094 5dou:A (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336095 5dou:A (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336096 5dou:A (2.6) BS03 PO4 6.3.4.16 GO:0000050 ... P31327 26592762
    336097 5dou:A (2.6) BS04 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336098 5dou:A (2.6) BS05 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336099 5dou:A (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    336100 5dou:A (2.6) BS07 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336101 5dou:B (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336102 5dou:B (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336103 5dou:B (2.6) BS03 PO4 6.3.4.16 GO:0000050 ... P31327 26592762
    336104 5dou:B (2.6) BS04 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336105 5dou:B (2.6) BS05 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336106 5dou:B (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    336107 5dou:B (2.6) BS07 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336108 5dou:C (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336109 5dou:C (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336110 5dou:C (2.6) BS03 PO4 6.3.4.16 GO:0000050 ... P31327 26592762
    336111 5dou:C (2.6) BS04 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336112 5dou:C (2.6) BS05 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336113 5dou:C (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    336114 5dou:C (2.6) BS07 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336115 5dou:D (2.6) BS01 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336116 5dou:D (2.6) BS02 MG 6.3.4.16 GO:0000050 ... P31327 26592762
    336117 5dou:D (2.6) BS03 PO4 6.3.4.16 GO:0000050 ... P31327 26592762
    336118 5dou:D (2.6) BS04 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336119 5dou:D (2.6) BS05 ADP 6.3.4.16 GO:0000050 ... P31327 26592762
    336120 5dou:D (2.6) BS06 NLG 6.3.4.16 GO:0000050 ... P31327 26592762
    336121 5dow:A (1.7) BS01 peptide ? GO:0000086 ... P0DP23 28045382
    336122 5dow:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    336123 5dow:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    336124 5dow:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    336125 5dow:A (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    336126 5dow:C (1.7) BS01 peptide ? GO:0000086 ... P0DP23 28045382
    336127 5dow:C (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    336128 5dow:C (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    336129 5dow:C (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    336130 5dow:C (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    336131 5dow:C (1.7) BS06 CL ? GO:0000086 ... P0DP23 28045382
    336132 5dow:E (1.7) BS01 peptide ? GO:0000086 ... P0DP23 28045382
    336133 5dow:E (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    336134 5dow:E (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    336135 5dow:E (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    336136 5dow:E (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    336137 5dow:G (1.7) BS01 peptide ? GO:0000086 ... P0DP23 28045382
    336138 5dow:G (1.7) BS02 CA ? GO:0000086 ... P0DP23 28045382
    336139 5dow:G (1.7) BS03 CA ? GO:0000086 ... P0DP23 28045382
    336140 5dow:G (1.7) BS04 CA ? GO:0000086 ... P0DP23 28045382
    336141 5dow:G (1.7) BS05 CA ? GO:0000086 ... P0DP23 28045382
    336142 5dox:10 (3.1) BS01 rna ? GO:0003735 ... P60493 26028538
    336143 5dox:10 (3.1) BS02 rna ? GO:0003735 ... P60493 26028538
    336144 5dox:10 (3.1) BS03 MG ? GO:0003735 ... P60493 26028538
    336145 5dox:11 (3.1) BS01 rna ? GO:0003735 ... P60494 26028538
    336146 5dox:12 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    336147 5dox:13 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    336148 5dox:13 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    336149 5dox:13 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    336150 5dox:14 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    336151 5dox:14 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    336152 5dox:15 (3.1) BS01 rna ? GO:0003735 ... P80339 26028538
    336153 5dox:15 (3.1) BS02 MG ? GO:0003735 ... P80339 26028538
    336154 5dox:15 (3.1) BS03 ZN ? GO:0003735 ... P80339 26028538
    336155 5dox:16 (3.1) BS01 rna ? GO:0000049 ... P35871 26028538
    336156 5dox:16 (3.1) BS02 ZN ? GO:0000049 ... P35871 26028538
    336157 5dox:17 (3.1) BS01 rna ? GO:0003735 ... P80340 26028538
    336158 5dox:18 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    336159 5dox:18 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 26028538
    336160 5dox:19 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    336161 5dox:19 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    336162 5dox:1D (3.1) BS01 rna ? GO:0002181 ... P60405 26028538
    336163 5dox:1D (3.1) BS02 MG ? GO:0002181 ... P60405 26028538
    336164 5dox:1D (3.1) BS03 MG ? GO:0002181 ... P60405 26028538
    336165 5dox:1D (3.1) BS04 MG ? GO:0002181 ... P60405 26028538
    336166 5dox:1E (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    336167 5dox:1E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    336168 5dox:1F (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    336169 5dox:1F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    336170 5dox:1F (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    336171 5dox:1F (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    336172 5dox:1G (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    336173 5dox:1G (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    336174 5dox:1G (3.1) BS03 MG ? GO:0000049 ... Q5SHQ0 26028538
    336175 5dox:1H (3.1) BS01 rna N/A GO:0003735 ... N/A 26028538
    336176 5dox:1I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    336177 5dox:1N (3.1) BS01 rna ? GO:0003729 ... P60488 26028538
    336178 5dox:1O (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    336179 5dox:1O (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    336180 5dox:1P (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    336181 5dox:1Q (3.1) BS01 rna ? GO:0000049 ... P60489 26028538
    336182 5dox:1Q (3.1) BS02 rna ? GO:0000049 ... P60489 26028538
    336183 5dox:1Q (3.1) BS03 MG ? GO:0000049 ... P60489 26028538
    336184 5dox:1Q (3.1) BS04 MG ? GO:0000049 ... P60489 26028538
    336185 5dox:1R (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    336186 5dox:1R (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 26028538
    336187 5dox:1S (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    336188 5dox:1S (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    336189 5dox:1T (3.1) BS01 rna ? GO:0003735 ... P60490 26028538
    336190 5dox:1T (3.1) BS02 rna ? GO:0003735 ... P60490 26028538
    336191 5dox:1U (3.1) BS01 rna ? GO:0000027 ... P60491 26028538
    336192 5dox:1U (3.1) BS02 MG ? GO:0000027 ... P60491 26028538
    336193 5dox:1U (3.1) BS03 MG ? GO:0000027 ... P60491 26028538
    336194 5dox:1V (3.1) BS01 rna ? GO:0003723 ... P60492 26028538
    336195 5dox:1W (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    336196 5dox:1X (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 26028538
    336197 5dox:1Y (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    336198 5dox:1Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    336199 5dox:1Z (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    336200 5dox:1Z (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26028538

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).