SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    336401 5doy:1V (2.6) BS03 MG ? GO:0003723 ... P60492 26028538
    336402 5doy:1V (2.6) BS04 MG ? GO:0003723 ... P60492 26028538
    336403 5doy:1V (2.6) BS05 MG ? GO:0003723 ... P60492 26028538
    336404 5doy:1V (2.6) BS06 MG ? GO:0003723 ... P60492 26028538
    336405 5doy:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    336406 5doy:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    336407 5doy:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    336408 5doy:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 26028538
    336409 5doy:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 26028538
    336410 5doy:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 26028538
    336411 5doy:1X (2.6) BS01 rna ? GO:0003735 ... Q5SHP0 26028538
    336412 5doy:1X (2.6) BS02 MG ? GO:0003735 ... Q5SHP0 26028538
    336413 5doy:1X (2.6) BS03 MG ? GO:0003735 ... Q5SHP0 26028538
    336414 5doy:1X (2.6) BS04 MG ? GO:0003735 ... Q5SHP0 26028538
    336415 5doy:1X (2.6) BS05 MG ? GO:0003735 ... Q5SHP0 26028538
    336416 5doy:1X (2.6) BS06 MG ? GO:0003735 ... Q5SHP0 26028538
    336417 5doy:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    336418 5doy:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 26028538
    336419 5doy:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 26028538
    336420 5doy:1Y (2.6) BS04 MG ? GO:0003723 ... Q5SHP9 26028538
    336421 5doy:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    336422 5doy:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 26028538
    336423 5doy:1b (2.6) BS01 rna ? GO:0003735 ... P80371 26028538
    336424 5doy:1b (2.6) BS02 MG ? GO:0003735 ... P80371 26028538
    336425 5doy:1b (2.6) BS03 MG ? GO:0003735 ... P80371 26028538
    336426 5doy:1c (2.6) BS01 rna ? GO:0003676 ... P80372 26028538
    336427 5doy:1d (2.6) BS01 rna ? GO:0003723 ... P80373 26028538
    336428 5doy:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 26028538
    336429 5doy:1d (2.6) BS03 MG ? GO:0003723 ... P80373 26028538
    336430 5doy:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 26028538
    336431 5doy:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    336432 5doy:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 26028538
    336433 5doy:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 26028538
    336434 5doy:1g (2.6) BS01 rna ? GO:0000049 ... P17291 26028538
    336435 5doy:1g (2.6) BS02 rna ? GO:0000049 ... P17291 26028538
    336436 5doy:1h (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336437 5doy:1i (2.6) BS01 rna ? GO:0000049 ... P80374 26028538
    336438 5doy:1i (2.6) BS02 rna ? GO:0000049 ... P80374 26028538
    336439 5doy:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 26028538
    336440 5doy:1k (2.6) BS01 rna ? GO:0003735 ... P80376 26028538
    336441 5doy:1k (2.6) BS02 MG ? GO:0003735 ... P80376 26028538
    336442 5doy:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 26028538
    336443 5doy:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    336444 5doy:1m (2.6) BS01 rna ? GO:0000049 ... P80377 26028538
    336445 5doy:1m (2.6) BS02 rna ? GO:0000049 ... P80377 26028538
    336446 5doy:1m (2.6) BS03 rna ? GO:0000049 ... P80377 26028538
    336447 5doy:1m (2.6) BS04 MG ? GO:0000049 ... P80377 26028538
    336448 5doy:1n (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336449 5doy:1n (2.6) BS02 ZN N/A GO:0003735 ... N/A 26028538
    336450 5doy:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 26028538
    336451 5doy:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 26028538
    336452 5doy:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 26028538
    336453 5doy:1q (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336454 5doy:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 26028538
    336455 5doy:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 26028538
    336456 5doy:1t (2.6) BS01 rna ? GO:0003723 ... P80380 26028538
    336457 5doy:1t (2.6) BS02 MG ? GO:0003723 ... P80380 26028538
    336458 5doy:20 (2.6) BS01 rna ? GO:0003735 ... P60493 26028538
    336459 5doy:20 (2.6) BS02 rna ? GO:0003735 ... P60493 26028538
    336460 5doy:21 (2.6) BS01 rna ? GO:0003735 ... P60494 26028538
    336461 5doy:21 (2.6) BS02 rna ? GO:0003735 ... P60494 26028538
    336462 5doy:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    336463 5doy:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    336464 5doy:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    336465 5doy:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    336466 5doy:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    336467 5doy:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    336468 5doy:25 (2.6) BS01 rna ? GO:0003735 ... P80339 26028538
    336469 5doy:25 (2.6) BS02 MG ? GO:0003735 ... P80339 26028538
    336470 5doy:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 26028538
    336471 5doy:26 (2.6) BS01 rna ? GO:0000049 ... P35871 26028538
    336472 5doy:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 26028538
    336473 5doy:27 (2.6) BS01 rna ? GO:0003735 ... P80340 26028538
    336474 5doy:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    336475 5doy:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    336476 5doy:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    336477 5doy:2D (2.6) BS01 rna ? GO:0002181 ... P60405 26028538
    336478 5doy:2D (2.6) BS02 rna ? GO:0002181 ... P60405 26028538
    336479 5doy:2D (2.6) BS03 MG ? GO:0002181 ... P60405 26028538
    336480 5doy:2D (2.6) BS04 MG ? GO:0002181 ... P60405 26028538
    336481 5doy:2D (2.6) BS05 MG ? GO:0002181 ... P60405 26028538
    336482 5doy:2D (2.6) BS06 MG ? GO:0002181 ... P60405 26028538
    336483 5doy:2D (2.6) BS07 MG ? GO:0002181 ... P60405 26028538
    336484 5doy:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    336485 5doy:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    336486 5doy:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 26028538
    336487 5doy:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    336488 5doy:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    336489 5doy:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    336490 5doy:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 26028538
    336491 5doy:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    336492 5doy:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    336493 5doy:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    336494 5doy:2H (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336495 5doy:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    336496 5doy:2N (2.6) BS01 rna ? GO:0003729 ... P60488 26028538
    336497 5doy:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    336498 5doy:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    336499 5doy:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    336500 5doy:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 26028538
    336501 5doy:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 26028538
    336502 5doy:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 26028538
    336503 5doy:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 26028538
    336504 5doy:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 26028538
    336505 5doy:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 26028538
    336506 5doy:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    336507 5doy:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    336508 5doy:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    336509 5doy:2T (2.6) BS01 rna ? GO:0003735 ... P60490 26028538
    336510 5doy:2T (2.6) BS02 rna ? GO:0003735 ... P60490 26028538
    336511 5doy:2U (2.6) BS01 rna ? GO:0000027 ... P60491 26028538
    336512 5doy:2U (2.6) BS02 MG ? GO:0000027 ... P60491 26028538
    336513 5doy:2U (2.6) BS03 MG ? GO:0000027 ... P60491 26028538
    336514 5doy:2V (2.6) BS01 rna ? GO:0003723 ... P60492 26028538
    336515 5doy:2V (2.6) BS02 MG ? GO:0003723 ... P60492 26028538
    336516 5doy:2V (2.6) BS03 MG ? GO:0003723 ... P60492 26028538
    336517 5doy:2V (2.6) BS04 MG ? GO:0003723 ... P60492 26028538
    336518 5doy:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    336519 5doy:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    336520 5doy:2W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 26028538
    336521 5doy:2X (2.6) BS01 rna ? GO:0003735 ... Q5SHP0 26028538
    336522 5doy:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    336523 5doy:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    336524 5doy:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    336525 5doy:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 26028538
    336526 5doy:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 26028538
    336527 5doy:2b (2.6) BS01 rna ? GO:0003735 ... P80371 26028538
    336528 5doy:2c (2.6) BS01 rna ? GO:0003676 ... P80372 26028538
    336529 5doy:2d (2.6) BS01 rna ? GO:0003723 ... P80373 26028538
    336530 5doy:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 26028538
    336531 5doy:2d (2.6) BS03 MG ? GO:0003723 ... P80373 26028538
    336532 5doy:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 26028538
    336533 5doy:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    336534 5doy:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 26028538
    336535 5doy:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 26028538
    336536 5doy:2g (2.6) BS01 rna ? GO:0000049 ... P17291 26028538
    336537 5doy:2g (2.6) BS02 rna ? GO:0000049 ... P17291 26028538
    336538 5doy:2h (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336539 5doy:2i (2.6) BS01 rna ? GO:0000049 ... P80374 26028538
    336540 5doy:2i (2.6) BS02 rna ? GO:0000049 ... P80374 26028538
    336541 5doy:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 26028538
    336542 5doy:2k (2.6) BS01 rna ? GO:0003735 ... P80376 26028538
    336543 5doy:2k (2.6) BS02 MG ? GO:0003735 ... P80376 26028538
    336544 5doy:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 26028538
    336545 5doy:2l (2.6) BS02 rna ? GO:0000049 ... Q5SHN3 26028538
    336546 5doy:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 26028538
    336547 5doy:2m (2.6) BS01 rna ? GO:0000049 ... P80377 26028538
    336548 5doy:2m (2.6) BS02 rna ? GO:0000049 ... P80377 26028538
    336549 5doy:2m (2.6) BS03 rna ? GO:0000049 ... P80377 26028538
    336550 5doy:2n (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336551 5doy:2n (2.6) BS02 ZN N/A GO:0003735 ... N/A 26028538
    336552 5doy:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 26028538
    336553 5doy:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 26028538
    336554 5doy:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 26028538
    336555 5doy:2q (2.6) BS01 rna N/A GO:0003735 ... N/A 26028538
    336556 5doy:2q (2.6) BS02 MG N/A GO:0003735 ... N/A 26028538
    336557 5doy:2q (2.6) BS03 MG N/A GO:0003735 ... N/A 26028538
    336558 5doy:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 26028538
    336559 5doy:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 26028538
    336560 5doy:2t (2.6) BS01 rna ? GO:0003723 ... P80380 26028538
    336561 5doy:2t (2.6) BS02 MG ? GO:0003723 ... P80380 26028538
    336562 5doz:A (2.26) BS01 NDP 1.1.1.35 GO:0016491 ... Q6E7K0 26526850
    336563 5doz:B (2.26) BS01 NDP 1.1.1.35 GO:0016491 ... Q6E7K0 26526850
    336564 5doz:C (2.26) BS01 NDP 1.1.1.35 GO:0016491 ... Q6E7K0 26526850
    336565 5dp0:A (2.382) BS01 peptide ? N/A P03372 27107013
    336566 5dp0:A (2.382) BS02 5ES ? N/A P03372 27107013
    336567 5dp0:B (2.382) BS01 peptide ? N/A P03372 27107013
    336568 5dp0:B (2.382) BS02 5ES ? N/A P03372 27107013
    336569 5dp2:A (0.96) BS01 NAP 1.1.1.35 GO:0016491 ... Q6DNE7 26526850
    336570 5dp3:A (2.05) BS01 5GH 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336571 5dp4:A (2.21) BS01 5E8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336572 5dp4:B (2.21) BS01 5E8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336573 5dp4:C (2.21) BS01 5E8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336574 5dp4:D (2.21) BS01 5E8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336575 5dp5:A (2.03) BS01 5E9 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336576 5dp6:A (3.01) BS01 5EB 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336577 5dp6:B (3.01) BS01 5EB 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336578 5dp7:A (2.08) BS01 5EC 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336579 5dp8:A (2.4) BS01 5ED 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336580 5dp9:A (1.9) BS01 5EX 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336581 5dpa:A (2.06) BS01 5F2 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0004197 ... A9XG43 26987809
    336582 5dpd:A (3.0) BS01 SAM ? N/A O05979 27474738
    336583 5dpd:B (3.0) BS01 SAM ? N/A O05979 27474738
    336584 5dpe:E (1.34) BS01 5H8 3.4.24.27 GO:0004222 ... P00800 26376645
    336585 5dpe:E (1.34) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 26376645
    336586 5dpe:E (1.34) BS03 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336587 5dpe:E (1.34) BS04 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336588 5dpe:E (1.34) BS05 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336589 5dpe:E (1.34) BS06 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336590 5dpf:E (1.47) BS01 5H9 3.4.24.27 GO:0004222 ... P00800 26376645
    336591 5dpf:E (1.47) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 26376645
    336592 5dpf:E (1.47) BS03 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336593 5dpf:E (1.47) BS04 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336594 5dpf:E (1.47) BS05 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336595 5dpf:E (1.47) BS06 CA 3.4.24.27 GO:0004222 ... P00800 26376645
    336596 5dpl:A (3.2) BS01 SAH ? GO:0046872 ... Q68XQ5 27474738
    336597 5dpl:B (3.2) BS01 SAH ? GO:0046872 ... Q68XQ5 27474738
    336598 5dpm:A (2.1) BS01 SAH 2.1.1.222
    2.1.1.64
    GO:0005515 ... P17993 N/A
    336599 5dpn:A (1.6) BS01 BGC ? N/A Q7WTN6 26451738
    336600 5dpn:A (1.6) BS02 BGC ? N/A Q7WTN6 26451738

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).