SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    336601 5dpn:A (1.6) BS03 XYS ? N/A Q7WTN6 26451738
    336602 5dpn:A (1.6) BS04 XYS ? N/A Q7WTN6 26451738
    336603 5dpn:A (1.6) BS05 CA ? N/A Q7WTN6 26451738
    336604 5dpv:A (2.285) BS01 5DN 2.7.11.1 GO:0004672 ... O14965 27339427
    336605 5dpv:A (2.285) BS02 SKE 2.7.11.1 GO:0004672 ... O14965 27339427 BindingDB: Kd=250nM, IC50=11nM
    336606 5dpw:A (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336607 5dpw:C (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336608 5dpw:E (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336609 5dpw:G (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336610 5dpw:I (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336611 5dpw:K (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336612 5dpw:M (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336613 5dpw:O (2.185) BS01 peptide ? GO:0006914 ... Q9BXW4 28655748
    336614 5dpx:A (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    336615 5dpx:A (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    336616 5dpx:A (1.85) BS03 L3B 3.5.2.6 GO:0008270 ... P52700 28505394
    336617 5dpx:B (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    336618 5dpx:B (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 28505394
    336619 5dpx:B (1.85) BS03 L3B 3.5.2.6 GO:0008270 ... P52700 28505394
    336620 5dpz:A (1.328) BS01 51V 3.4.23.22 GO:0004190 ... P11838 N/A
    336621 5dq0:A (1.8) BS01 ZN ? N/A O60462 N/A
    336622 5dq0:A (1.8) BS02 ZN ? N/A O60462 N/A
    336623 5dq1:A (1.489) BS01 5HL 3.4.23.22 GO:0004190 ... P11838 N/A
    336624 5dq2:A (1.514) BS01 5HO 3.4.23.22 GO:0004190 ... P11838 N/A
    336625 5dq4:A (1.15) BS01 5HQ 3.4.23.22 GO:0004190 ... P11838 N/A
    336626 5dq5:A (1.47) BS01 5HS 3.4.23.22 GO:0004190 ... P11838 N/A
    336627 5dq8:A (2.305) BS01 FLF ? N/A Q15562 26592798 MOAD: Kd=73uM
    336628 5dq8:B (2.305) BS01 FLF ? N/A Q15562 26592798 MOAD: Kd=73uM
    336629 5dq8:B (2.305) BS02 FLF ? N/A Q15562 26592798 MOAD: Kd=73uM
    336630 5dq9:A (1.95) BS01 GN1 N/A N/A N/A N/A
    336631 5dq9:A (1.95) BS02 GN4 N/A N/A N/A N/A
    336632 5dq9:C (1.95) BS01 GN1 N/A N/A N/A N/A
    336633 5dq9:C (1.95) BS02 GN4 N/A N/A N/A N/A
    336634 5dq9:H (1.95) BS01 GN1 N/A N/A N/A N/A
    336635 5dq9:H (1.95) BS02 GN4 N/A N/A N/A N/A
    336636 5dqc:A (2.4651) BS01 5E7 3.4.23.46 GO:0004190 ... P56817 27347366 MOAD: Ki=45.6nM
    336637 5dqc:B (2.4651) BS01 5E7 3.4.23.46 GO:0004190 ... P56817 27347366 MOAD: Ki=45.6nM
    336638 5dqc:C (2.4651) BS01 5E7 3.4.23.46 GO:0004190 ... P56817 27347366 MOAD: Ki=45.6nM
    336639 5dqd:H (1.94) BS01 GN1 N/A N/A N/A N/A
    336640 5dqd:H (1.94) BS02 GN4 N/A N/A N/A N/A
    336641 5dqe:A (2.183) BS01 5E4 ? N/A Q15562 26592798
    336642 5dqe:B (2.183) BS01 5E4 ? N/A Q15562 26592798
    336643 5dqe:B (2.183) BS02 5E4 ? N/A Q15562 26592798
    336644 5dqf:A (2.15) BS01 LCR ? GO:0003677 ... P35747 26896718 MOAD: Kd=253uM
    336645 5dqf:A (2.15) BS02 CZE ? GO:0003677 ... P35747 26896718 MOAD: Kd=253uM
    336646 5dqg:A (2.29) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336647 5dqg:A (2.29) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336648 5dqg:A (2.29) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336649 5dqg:A (2.29) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336650 5dqg:A (2.29) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336651 5dqh:A (1.99) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336652 5dqh:A (1.99) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336653 5dqh:A (1.99) BS03 XG4 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336654 5dqh:A (1.99) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336655 5dqh:A (1.99) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336656 5dqi:A (2.3) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336657 5dqi:A (2.3) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336658 5dqi:A (2.3) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336659 5dqi:A (2.3) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336660 5dqi:A (2.3) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    336661 5dql:A (1.782) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 28679637
    336662 5dql:A (1.782) BS02 VGX 4.1.3.1 GO:0003824 ... P9WKK7 28679637
    336663 5dql:B (1.782) BS01 VGX 4.1.3.1 GO:0003824 ... P9WKK7 28679637
    336664 5dql:C (1.782) BS01 VGX 4.1.3.1 GO:0003824 ... P9WKK7 28679637
    336665 5dql:D (1.782) BS01 VGX 4.1.3.1 GO:0003824 ... P9WKK7 28679637
    336666 5dqn:A (2.262) BS01 HEM 1.14.15.29 GO:0004497 ... A0R4Y3 26522442
    336667 5dqo:A (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    336668 5dqo:B (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    336669 5dqo:C (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    336670 5dqo:D (2.3) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    336671 5dqq:A (2.872) BS01 CA ? GO:0000325 ... Q94KI8 26961658
    336672 5dqq:A (2.872) BS02 CA ? GO:0000325 ... Q94KI8 26961658
    336673 5dqq:A (2.872) BS03 CA ? GO:0000325 ... Q94KI8 26961658
    336674 5dqq:A (2.872) BS04 66R ? GO:0000325 ... Q94KI8 26961658
    336675 5dqr:A (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336676 5dqr:A (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336677 5dqr:A (2.7) BS03 FAD 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336678 5dqr:B (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336679 5dqr:B (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336680 5dqr:B (2.7) BS03 FAD 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336681 5dqr:C (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336682 5dqr:C (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336683 5dqr:C (2.7) BS03 FAD 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336684 5dqr:D (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336685 5dqr:D (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336686 5dqr:D (2.7) BS03 FAD 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336687 5dqr:E (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336688 5dqr:E (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336689 5dqr:E (2.7) BS03 FAD 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336690 5dqr:F (2.7) BS01 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336691 5dqr:F (2.7) BS02 SF4 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336692 5dqr:F (2.7) BS03 FAD 1.17.7.2 GO:0003824 ... Q8GS60 27072131
    336693 5dqt:A (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336694 5dqt:A (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336695 5dqt:B (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336696 5dqt:B (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336697 5dqt:C (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336698 5dqt:C (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336699 5dqt:D (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336700 5dqt:D (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336701 5dqt:E (3.1) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336702 5dqt:E (3.1) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336703 5dqt:F (3.1) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336704 5dqt:F (3.1) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336705 5dqt:I (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336706 5dqt:I (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336707 5dqt:J (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336708 5dqt:K (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336709 5dqt:K (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336710 5dqt:K (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336711 5dqt:L (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336712 5dqt:L (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336713 5dqt:M (3.1) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336714 5dqt:M (3.1) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336715 5dqt:N (3.1) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336716 5dqt:N (3.1) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336717 5dqu:A (4.5) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336718 5dqu:A (4.5) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336719 5dqu:B (4.5) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336720 5dqu:C (4.5) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336721 5dqu:D (4.5) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336722 5dqu:D (4.5) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336723 5dqu:E (4.5) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336724 5dqu:F (4.5) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336725 5dqu:F (4.5) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336726 5dqw:A (2.15) BS01 ADP N/A N/A N/A 27062940
    336727 5dqw:B (2.15) BS01 ADP N/A N/A N/A 27062940
    336728 5dqz:A (2.7) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336729 5dqz:A (2.7) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336730 5dqz:B (2.7) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336731 5dqz:B (2.7) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336732 5dqz:B (2.7) BS03 MG 3.1.-.- GO:0003676 ... Q46896 26478180
    336733 5dqz:C (2.7) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336734 5dqz:C (2.7) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336735 5dqz:C (2.7) BS03 MG 3.1.-.- GO:0003676 ... Q46896 26478180
    336736 5dqz:D (2.7) BS01 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336737 5dqz:D (2.7) BS02 dna 3.1.-.- GO:0003676 ... Q46896 26478180
    336738 5dqz:E (2.7) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336739 5dqz:E (2.7) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336740 5dqz:F (2.7) BS01 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336741 5dqz:F (2.7) BS02 dna 3.1.-.- GO:0003677 ... P45956 26478180
    336742 5dr0:A (1.4) BS01 5GC 3.4.23.22 GO:0004190 ... P11838 N/A
    336743 5dr1:A (1.45) BS01 5GJ 3.4.23.22 GO:0004190 ... P11838 N/A
    336744 5dr2:A (2.46) BS01 5E1 2.7.11.1 GO:0004672 ... O14965 27339427
    336745 5dr2:A (2.46) BS02 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    336746 5dr2:A (2.46) BS03 ATP 2.7.11.1 GO:0004672 ... O14965 27339427
    336747 5dr3:A (1.24) BS01 5GL 3.4.23.22 GO:0004190 ... P11838 N/A
    336748 5dr4:A (1.5) BS01 5GQ 3.4.23.22 GO:0004190 ... P11838 N/A
    336749 5dr6:A (2.534) BS01 5E1 2.7.11.1 GO:0004672 ... O14965 27339427
    336750 5dr6:A (2.534) BS02 SKE 2.7.11.1 GO:0004672 ... O14965 27339427 BindingDB: Kd=250nM, IC50=11nM
    336751 5dr7:A (1.234) BS01 5HJ 3.4.23.22 GO:0004190 ... P11838 N/A
    336752 5dr8:A (1.47) BS01 5G1 3.4.23.22 GO:0004190 ... P11838 N/A
    336753 5dr9:A (2.47) BS01 SKE 2.7.11.1 GO:0004672 ... O14965 27339427 BindingDB: Kd=250nM, IC50=11nM
    336754 5dr9:A (2.47) BS02 5E2 2.7.11.1 GO:0004672 ... O14965 27339427
    336755 5drb:A (1.65) BS01 5FJ 2.7.11.1 GO:0004672 ... Q9JIH7 27595330 MOAD: Kd=3.71nM
    336756 5drc:A (2.18) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    336757 5drc:A (2.18) BS02 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    336758 5drc:A (2.18) BS03 5ER 2.3.3.9 GO:0000287 ... P9WK17 27738104
    336759 5drd:A (2.13) BS01 MG 2.7.11.1 GO:0004672 ... O14965 27339427
    336760 5drd:A (2.13) BS02 ATP 2.7.11.1 GO:0004672 ... O14965 27339427
    336761 5dri:A (2.8) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    336762 5dri:A (2.8) BS02 5EQ 2.3.3.9 GO:0000287 ... P9WK17 27738104
    336763 5drj:A (2.07) BS01 peptide ? N/A P03372 27107013
    336764 5drj:A (2.07) BS02 5EU ? N/A P03372 27107013 BindingDB: EC50=101nM
    336765 5drj:B (2.07) BS01 peptide ? N/A P03372 27107013
    336766 5drj:B (2.07) BS02 5EU ? N/A P03372 27107013 BindingDB: EC50=101nM
    336767 5drk:A (2.38) BS01 AMP ? GO:0000166 ... D5X329 27464895
    336768 5drk:A (2.38) BS02 BCT ? GO:0000166 ... D5X329 27464895
    336769 5drk:B (2.38) BS01 AMP ? GO:0000166 ... D5X329 27464895
    336770 5drk:B (2.38) BS02 ADP ? GO:0000166 ... D5X329 27464895
    336771 5drk:B (2.38) BS03 BCT ? GO:0000166 ... D5X329 27464895
    336772 5drk:C (2.38) BS01 ADP ? GO:0000166 ... D5X329 27464895
    336773 5drm:A (2.241) BS01 peptide ? N/A P03372 27107013
    336774 5drm:A (2.241) BS02 5ET ? N/A P03372 27107013 BindingDB: EC50=2180nM
    336775 5drm:B (2.241) BS01 peptide ? N/A P03372 27107013
    336776 5drm:B (2.241) BS02 5ET ? N/A P03372 27107013 BindingDB: EC50=2180nM
    336777 5drn:A (1.994) BS01 5CT N/A N/A N/A 26778617
    336778 5drn:B (1.994) BS01 5CT N/A N/A N/A 26778617
    336779 5drn:H (1.994) BS01 5CT N/A N/A N/A 26778617
    336780 5drn:L (1.994) BS01 5CT N/A N/A N/A 26778617
    336781 5dro:A (2.01) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    336782 5dro:A (2.01) BS02 ZH2 3.5.1.108 GO:0006796 ... O67648 26912110
    336783 5dro:B (2.01) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    336784 5dro:B (2.01) BS02 ZH2 3.5.1.108 GO:0006796 ... O67648 26912110
    336785 5drp:A (1.889) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    336786 5drp:A (1.889) BS02 5EP 3.5.1.108 GO:0006796 ... O67648 26912110
    336787 5drp:B (1.889) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 26912110
    336788 5drp:B (1.889) BS02 5EP 3.5.1.108 GO:0006796 ... O67648 26912110
    336789 5drq:A (1.63) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    336790 5drq:A (1.63) BS02 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    336791 5drq:A (1.63) BS03 5EM 3.5.1.108 GO:0006796 ... P47205 26912110
    336792 5drr:A (1.59) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    336793 5drr:A (1.59) BS02 ZN 3.5.1.108 GO:0006796 ... P47205 26912110
    336794 5drr:A (1.59) BS03 5EN 3.5.1.108 GO:0006796 ... P47205 26912110
    336795 5drs:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003
    336796 5drs:A (1.1) BS02 5EF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28001003 MOAD: Kd=1.1nM
    336797 5drt:A (2.69) BS01 5EG 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 BindingDB: IC50=4400nM
    336798 5drt:B (2.69) BS01 5EG 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 BindingDB: IC50=4400nM
    336799 5drv:A (2.75) BS01 peptide ? N/A Q9UN86 26410532
    336800 5dry:A (2.41) BS01 5EK 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 MOAD: ic50=20nM
    BindingDB: IC50=20nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).