SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    337201 5dx1:C (1.93) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337202 5dx1:D (1.93) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337203 5dx1:D (1.93) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337204 5dx3:A (2.0903) BS01 peptide ? N/A P03372 26928945
    337205 5dx3:A (2.0903) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337206 5dx3:B (2.0903) BS01 peptide ? N/A P03372 26928945
    337207 5dx3:B (2.0903) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337208 5dx4:A (2.3) BS01 E0C ? N/A O60885 26731490 MOAD: Kd=0.137uM
    BindingDB: IC50=410nM, Kd=137nM
    337209 5dx5:A (2.37) BS01 PLP N/A GO:0018826 ... N/A 26750487
    337210 5dx5:A (2.37) BS02 PLP N/A GO:0018826 ... N/A 26750487
    337211 5dx5:B (2.37) BS01 PLP N/A GO:0018826 ... N/A 26750487
    337212 5dx5:B (2.37) BS02 PLP N/A GO:0018826 ... N/A 26750487
    337213 5dx6:A (1.75) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    337214 5dx6:A (1.75) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    337215 5dx6:A (1.75) BS03 5GY 2.2.1.6 GO:0000287 ... P27696 N/A
    337216 5dx6:B (1.75) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    337217 5dx6:B (1.75) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    337218 5dx6:B (1.75) BS03 TPP 2.2.1.6 GO:0000287 ... P27696 N/A
    337219 5dx6:B (1.75) BS04 65S 2.2.1.6 GO:0000287 ... P27696 N/A
    337220 5dx7:A (2.1) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    337221 5dx7:A (2.1) BS02 5H6 2.3.3.9 GO:0000287 ... P9WK17 27738104
    337222 5dx8:A (1.94) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337223 5dx8:A (1.94) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337224 5dx8:B (1.94) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337225 5dx8:B (1.94) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337226 5dx8:C (1.94) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337227 5dx8:C (1.94) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337228 5dx8:D (1.94) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337229 5dx8:D (1.94) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337230 5dx9:A (2.15) BS01 GLC 2.4.1.15 GO:0003824 ... Q059G6 27307435
    337231 5dx9:A (2.15) BS02 G6P 2.4.1.15 GO:0003824 ... Q059G6 27307435
    337232 5dx9:A (2.15) BS03 MG 2.4.1.15 GO:0003824 ... Q059G6 27307435
    337233 5dxa:A (2.07) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337234 5dxa:A (2.07) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337235 5dxa:B (2.07) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337236 5dxa:B (2.07) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337237 5dxa:C (2.07) BS01 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337238 5dxa:D (2.07) BS01 peptide 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337239 5dxa:D (2.07) BS02 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337240 5dxb:A (2.08) BS01 peptide ? N/A P03372 26928945
    337241 5dxb:A (2.08) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337242 5dxb:B (2.08) BS01 peptide ? N/A P03372 26928945
    337243 5dxb:B (2.08) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337244 5dxe:A (1.5) BS01 peptide ? N/A P03372 26928945
    337245 5dxe:A (1.5) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337246 5dxe:B (1.5) BS01 peptide ? N/A P03372 26928945
    337247 5dxe:B (1.5) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337248 5dxg:A (1.86) BS01 peptide ? N/A P03372 26928945
    337249 5dxg:A (1.86) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337250 5dxg:B (1.86) BS01 peptide ? N/A P03372 26928945
    337251 5dxg:B (1.86) BS02 EST ? N/A P03372 26928945 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    337252 5dxh:A (3.0) BS01 5H2 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 26741947 BindingDB: Ki=1.000000nM
    337253 5dxh:D (3.0) BS01 5H2 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 26741947 BindingDB: Ki=1.000000nM
    337254 5dxi:A (2.0) BS01 GLC 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337255 5dxi:A (2.0) BS02 GLC 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337256 5dxi:A (2.0) BS03 MG 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337257 5dxi:A (2.0) BS04 BEF 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337258 5dxi:B (2.0) BS01 GLC 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337259 5dxi:B (2.0) BS02 GLC 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337260 5dxi:B (2.0) BS03 MG 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337261 5dxi:B (2.0) BS04 BEF 2.4.1.15 GO:0003824 ... Q5AI14 27307435
    337262 5dxj:A (1.95) BS01 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337263 5dxj:B (1.95) BS01 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337264 5dxj:C (1.95) BS01 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337265 5dxj:D (1.95) BS01 SFG 2.1.1.319 GO:0016274 ... Q86X55 26551522
    337266 5dxk:A (2.226) BS01 peptide ? N/A P03372 27107013
    337267 5dxk:A (2.226) BS02 5J1 ? N/A P03372 27107013
    337268 5dxk:B (2.226) BS01 peptide ? N/A P03372 27107013
    337269 5dxk:B (2.226) BS02 5J1 ? N/A P03372 27107013
    337270 5dxm:A (2.37) BS01 peptide ? N/A P03372 27107013
    337271 5dxm:A (2.37) BS02 5J0 ? N/A P03372 27107013
    337272 5dxm:B (2.37) BS01 peptide ? N/A P03372 27107013
    337273 5dxm:B (2.37) BS02 5J0 ? N/A P03372 27107013
    337274 5dxn:A (1.65) BS01 MG 2.4.1.15 GO:0003824 ... Q4WWF5 27307435
    337275 5dxo:A (1.9) BS01 MG 2.4.1.15 GO:0003824 ... Q4WWF5 27307435
    337276 5dxo:B (1.9) BS01 MG 2.4.1.15 GO:0003824 ... Q4WWF5 27307435
    337277 5dxp:A (2.201) BS01 peptide ? N/A P03372 27107013
    337278 5dxp:A (2.201) BS02 5HX ? N/A P03372 27107013
    337279 5dxp:B (2.201) BS01 peptide ? N/A P03372 27107013
    337280 5dxp:B (2.201) BS02 5HX ? N/A P03372 27107013
    337281 5dxq:A (2.4) BS01 peptide ? N/A P03372 27107013
    337282 5dxq:A (2.4) BS02 5HZ ? N/A P03372 27107013
    337283 5dxq:B (2.4) BS01 peptide ? N/A P03372 27107013
    337284 5dxq:B (2.4) BS02 5HZ ? N/A P03372 27107013
    337285 5dxr:A (2.28) BS01 peptide ? N/A P03372 27107013
    337286 5dxr:A (2.28) BS02 5HW ? N/A P03372 27107013
    337287 5dxr:B (2.28) BS01 peptide ? N/A P03372 27107013
    337288 5dxr:B (2.28) BS02 5HW ? N/A P03372 27107013
    337289 5dxt:A (2.25) BS01 5H5 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 26741947 MOAD: Ki=0.2nM
    BindingDB: Ki=0.350nM
    337290 5dxu:A (2.64) BS01 5H5 2.7.1.137
    2.7.1.153
    GO:0001779 ... O00329 26741947 BindingDB: Ki=6.94nM
    337291 5dxv:A (1.55) BS01 NAP N/A N/A N/A 27229326
    337292 5dxx:A (1.45) BS01 FMN 1.3.1.92 GO:0005737 ... C5H429 N/A
    337293 5dxy:A (1.77) BS01 FMN 1.3.1.92 GO:0005737 ... C5H429 N/A
    337294 5dxy:A (1.77) BS02 5J8 1.3.1.92 GO:0005737 ... C5H429 N/A
    337295 5dy0:A (3.0) BS01 dna N/A GO:0003677 ... N/A 26744254
    337296 5dy0:A (3.0) BS02 dna N/A GO:0003677 ... N/A 26744254
    337297 5dy0:B (3.0) BS01 dna N/A GO:0003677 ... N/A 26744254
    337298 5dy0:B (3.0) BS02 dna N/A GO:0003677 ... N/A 26744254
    337299 5dy0:C (3.0) BS01 dna N/A GO:0003677 ... N/A 26744254
    337300 5dy0:C (3.0) BS02 dna N/A GO:0003677 ... N/A 26744254
    337301 5dy0:D (3.0) BS01 dna N/A GO:0003677 ... N/A 26744254
    337302 5dy0:D (3.0) BS02 dna N/A GO:0003677 ... N/A 26744254
    337303 5dy1:A (2.651) BS01 CA N/A N/A N/A 26744254
    337304 5dy1:B (2.651) BS01 CA N/A N/A N/A 26744254
    337305 5dy2:A (1.57) BS01 FMN 1.3.1.92 GO:0005737 ... C5H429 N/A
    337306 5dy2:A (1.57) BS02 DIN 1.3.1.92 GO:0005737 ... C5H429 N/A
    337307 5dy3:A (1.82) BS01 FMN 1.3.1.92 GO:0005737 ... C5H429 N/A
    337308 5dy3:A (1.82) BS02 HBA 1.3.1.92 GO:0005737 ... C5H429 N/A
    337309 5dy4:A (1.77) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26696402
    337310 5dy4:A (1.77) BS02 5GN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26696402 MOAD: ic50=0.21uM
    BindingDB: IC50=210nM
    337311 5dy4:A (1.77) BS03 NAD 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26696402
    337312 5dy5:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26748890
    337313 5dy5:A (1.95) BS02 5GR 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26748890 MOAD: ic50=0.163uM
    BindingDB: IC50=160nM
    337314 5dy5:A (1.95) BS03 BU3 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 26748890
    337315 5dy7:A (1.69) BS01 5GT ? N/A P55201 27167503 BindingDB: Kd=>200000nM
    337316 5dy8:A (2.031) BS01 peptide ? N/A P03372 27107013
    337317 5dy8:A (2.031) BS02 5K4 ? N/A P03372 27107013
    337318 5dy8:B (2.031) BS01 peptide ? N/A P03372 27107013
    337319 5dy8:B (2.031) BS02 5K4 ? N/A P03372 27107013
    337320 5dy9:A (1.6) BS01 AMP ? GO:0003723 ... Q58830 27187760
    337321 5dy9:D (1.6) BS01 AMP ? GO:0003723 ... Q58830 27187760
    337322 5dy9:E (1.6) BS01 AMP ? GO:0003723 ... Q58830 27187760
    337323 5dy9:F (1.6) BS01 AMP ? GO:0003723 ... Q58830 27187760
    337324 5dy9:G (1.6) BS01 AMP ? GO:0003723 ... Q58830 27187760
    337325 5dy9:L (1.6) BS01 AMP ? GO:0003723 ... Q58830 27187760
    337326 5dya:A (1.65) BS01 5GV ? N/A P55201 27167503 BindingDB: Kd=>200000nM
    337327 5dyb:A (2.27) BS01 peptide ? N/A P03372 27107013
    337328 5dyb:A (2.27) BS02 5K2 ? N/A P03372 27107013
    337329 5dyb:B (2.27) BS01 peptide ? N/A P03372 27107013
    337330 5dyb:B (2.27) BS02 5K2 ? N/A P03372 27107013
    337331 5dyc:A (1.65) BS01 5GU ? N/A P55201 27167503
    337332 5dyd:A (2.485) BS01 peptide ? N/A P03372 27107013
    337333 5dyd:A (2.485) BS02 5K1 ? N/A P03372 27107013
    337334 5dyd:B (2.485) BS01 peptide ? N/A P03372 27107013
    337335 5dyd:B (2.485) BS02 5K1 ? N/A P03372 27107013
    337336 5dye:A (3.5) BS01 PS6 ? GO:0005515 ... P55064 26569106
    337337 5dye:B (3.5) BS01 PS6 ? GO:0005515 ... P55064 26569106
    337338 5dye:C (3.5) BS01 PS6 ? GO:0005515 ... P55064 26569106
    337339 5dye:D (3.5) BS01 PS6 ? GO:0005515 ... P55064 26569106
    337340 5dyf:A (1.854) BS01 ZN 3.4.11.2 GO:0004177 ... Q9JYV4 N/A
    337341 5dyf:A (1.854) BS02 5HR 3.4.11.2 GO:0004177 ... Q9JYV4 N/A
    337342 5dyg:A (2.2) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337343 5dyh:A (2.682) BS01 4TI ? GO:0005576 ... P02787 27070073
    337344 5dyh:A (2.682) BS02 CO3 ? GO:0005576 ... P02787 27070073
    337345 5dyh:B (2.682) BS01 4TI ? GO:0005576 ... P02787 27070073
    337346 5dyh:B (2.682) BS02 CO3 ? GO:0005576 ... P02787 27070073
    337347 5dyi:A (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337348 5dyi:B (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337349 5dyi:C (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337350 5dyi:D (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337351 5dyi:E (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337352 5dyi:F (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337353 5dyi:G (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337354 5dyi:H (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337355 5dyi:I (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337356 5dyi:J (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337357 5dyi:K (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337358 5dyi:L (3.71) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 26818443
    337359 5dyj:A (2.5) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    337360 5dyj:A (2.5) BS02 AMP 2.7.11.7 GO:0004674 ... P42527 27211275
    337361 5dyj:B (2.5) BS01 ZN 2.7.11.7 GO:0004674 ... P42527 27211275
    337362 5dyj:B (2.5) BS02 AMP 2.7.11.7 GO:0004674 ... P42527 27211275
    337363 5dyo:A (2.36) BS01 FLU N/A N/A N/A 26756394
    337364 5dyo:B (2.36) BS01 FLU N/A N/A N/A 26756394
    337365 5dyo:B (2.36) BS02 FLU N/A N/A N/A 26756394
    337366 5dyo:H (2.36) BS01 FLU N/A N/A N/A 26756394
    337367 5dyo:L (2.36) BS01 FLU N/A N/A N/A 26756394
    337368 5dyo:L (2.36) BS02 FLU N/A N/A N/A 26756394
    337369 5dyp:A (2.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    337370 5dyp:C (2.4) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    337371 5dys:A (2.3) BS01 RET ? GO:0000139 ... P02699 27458239
    337372 5dyt:A (2.55) BS01 FUC 3.1.1.8 GO:0004104 ... P06276 28000737
    337373 5dyt:A (2.55) BS02 FUC 3.1.1.8 GO:0004104 ... P06276 28000737
    337374 5dyt:A (2.55) BS03 5HB 3.1.1.8 GO:0004104 ... P06276 28000737
    337375 5dyt:B (2.55) BS01 5HB 3.1.1.8 GO:0004104 ... P06276 28000737
    337376 5dyu:A (1.65) BS01 MZ0 ? N/A Q9UIF8 26942307
    337377 5dyu:A (1.65) BS02 MZ0 ? N/A Q9UIF8 26942307
    337378 5dyw:A (2.5) BS01 FUC 3.1.1.8 GO:0004104 ... P06276 28000737
    337379 5dyw:A (2.5) BS02 FUL 3.1.1.8 GO:0004104 ... P06276 28000737
    337380 5dyw:A (2.5) BS03 5HF 3.1.1.8 GO:0004104 ... P06276 28000737 MOAD: ic50=4.9nM
    BindingDB: IC50=4.9nM
    337381 5dyw:B (2.5) BS01 FUL 3.1.1.8 GO:0004104 ... P06276 28000737
    337382 5dyw:B (2.5) BS02 5HF 3.1.1.8 GO:0004104 ... P06276 28000737 MOAD: ic50=4.9nM
    BindingDB: IC50=4.9nM
    337383 5dyx:A (1.85) BS01 ADE ? N/A Q9UIF8 26942307
    337384 5dyy:A (2.65) BS01 FUL 3.1.1.8 GO:0004104 ... P06276 28000737
    337385 5dyy:A (2.65) BS02 5HH 3.1.1.8 GO:0004104 ... P06276 28000737
    337386 5dyy:B (2.65) BS01 5HH 3.1.1.8 GO:0004104 ... P06276 28000737
    337387 5dyz:A (1.967) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    337388 5dyz:C (1.967) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083
    337389 5dyz:C (1.967) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 26718083 MOAD: Kd=0.54uM
    BindingDB: Kd=82nM
    337390 5dz0:A (2.24) BS01 peptide ? N/A P03372 27107013
    337391 5dz0:A (2.24) BS02 5K0 ? N/A P03372 27107013
    337392 5dz0:B (2.24) BS01 peptide ? N/A P03372 27107013
    337393 5dz0:B (2.24) BS02 5K0 ? N/A P03372 27107013
    337394 5dz1:A (2.2) BS01 peptide ? N/A P03372 27107013
    337395 5dz1:A (2.2) BS02 5JY ? N/A P03372 27107013
    337396 5dz1:B (2.2) BS01 peptide ? N/A P03372 27107013
    337397 5dz1:B (2.2) BS02 5JY ? N/A P03372 27107013
    337398 5dz2:A (2.111) BS01 MG 4.1.99.16
    4.2.3.22
    4.2.3.75
    GO:0010333 ... Q9X839 26598179
    337399 5dz2:A (2.111) BS02 212 4.1.99.16
    4.2.3.22
    4.2.3.75
    GO:0010333 ... Q9X839 26598179
    337400 5dz2:B (2.111) BS01 MG 4.1.99.16
    4.2.3.22
    4.2.3.75
    GO:0010333 ... Q9X839 26598179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).