SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    340801 5ekc:C (1.895) BS01 NAP ? GO:0000166 ... G7VCG0 N/A
    340802 5ekc:D (1.895) BS01 NAP ? GO:0000166 ... G7VCG0 N/A
    340803 5ekc:E (1.895) BS01 NAP ? GO:0000166 ... G7VCG0 N/A
    340804 5ekc:F (1.895) BS01 NAP ? GO:0000166 ... G7VCG0 N/A
    340805 5ekc:G (1.895) BS01 NAP ? GO:0000166 ... G7VCG0 N/A
    340806 5ekc:H (1.895) BS01 NAP ? GO:0000166 ... G7VCG0 N/A
    340807 5ekd:A (1.82) BS01 5BX 6.1.1.2 GO:0000166 ... Q9UGM6 N/A
    340808 5ekd:A (1.82) BS02 ATP 6.1.1.2 GO:0000166 ... Q9UGM6 N/A
    340809 5ekd:B (1.82) BS01 5BX 6.1.1.2 GO:0000166 ... Q9UGM6 N/A
    340810 5ekd:B (1.82) BS02 ATP 6.1.1.2 GO:0000166 ... Q9UGM6 N/A
    340811 5eke:A (3.001) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340812 5eke:B (3.001) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340813 5eke:B (3.001) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    340814 5eke:C (3.001) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340815 5eke:C (3.001) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    340816 5eke:D (3.001) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340817 5ekf:A (2.0) BS01 peptide ? GO:0005737 ... P52293 26812207
    340818 5ekf:A (2.0) BS02 peptide ? GO:0005737 ... P52293 26812207
    340819 5ekg:A (2.8) BS01 peptide ? GO:0005737 ... P52293 26812207
    340820 5ekg:A (2.8) BS02 peptide ? GO:0005737 ... P52293 26812207
    340821 5ekh:A (1.34) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26692420
    340822 5ekh:A (1.34) BS02 5RD 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26692420 MOAD: Kd=1.11uM
    340823 5ekj:A (1.129) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26692420
    340824 5ekj:A (1.129) BS02 TG4 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26692420 MOAD: Kd=1uM
    340825 5ekk:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    340826 5ekk:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    340827 5ekl:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    340828 5ekl:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    340829 5ekm:A (1.33) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26692420
    340830 5ekm:A (1.33) BS02 TG5 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 26692420 MOAD: Kd=0.48uM
    340831 5ekn:A (2.594) BS01 N58 2.7.11.24 GO:0000165 ... O15264 27369736
    340832 5eko:A (2.0) BS01 N17 2.7.11.24 GO:0000165 ... O15264 27369736 MOAD: ic50=15785nM
    BindingDB: IC50=15785nM
    340833 5ekp:A (3.194) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340834 5ekp:B (3.194) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340835 5ekp:B (3.194) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    340836 5ekp:C (3.194) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340837 5ekp:C (3.194) BS02 MG 2.4.-.- GO:0005886 ... Q55487 26729507
    340838 5ekp:D (3.194) BS01 UDP 2.4.-.- GO:0005886 ... Q55487 26729507
    340839 5eks:A (1.85) BS01 NAD 4.2.3.4 GO:0000166 ... V5V8R5 N/A
    340840 5eks:A (1.85) BS02 MG 4.2.3.4 GO:0000166 ... V5V8R5 N/A
    340841 5eks:B (1.85) BS01 NAD 4.2.3.4 GO:0000166 ... V5V8R5 N/A
    340842 5eks:B (1.85) BS02 MG 4.2.3.4 GO:0000166 ... V5V8R5 N/A
    340843 5eku:A (2.801) BS01 SAH ? GO:0008168 ... D6XJ80 26858449
    340844 5eku:B (2.801) BS01 SAH ? GO:0008168 ... D6XJ80 26858449
    340845 5ekv:A (3.61) BS01 peptide ? GO:0000082 ... P06730 27592390
    340846 5ekv:A (3.61) BS02 5PQ ? GO:0000082 ... P06730 27592390
    340847 5ekv:C (3.61) BS01 peptide ? GO:0000082 ... P06730 27592390
    340848 5ekv:C (3.61) BS02 5PQ ? GO:0000082 ... P06730 27592390
    340849 5ekw:A (1.1) BS01 5DL 4.2.1.19 GO:0000105 ... O23346 27717128
    340850 5ekw:A (1.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 27717128
    340851 5ekx:A (1.76) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P27915 27750202
    340852 5ekx:A (1.76) BS02 2CQ 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P27915 27750202
    340853 5ekx:B (1.76) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P27915 27750202
    340854 5eky:A (1.1) BS01 BU2 4.1.2.4 GO:0003824 ... P0A6L0 30155096
    340855 5el0:A (1.85) BS01 NAP ? GO:0000166 ... A0A0H3AQ75 N/A
    340856 5el1:A (1.25) BS01 1BO 4.1.2.4 GO:0003824 ... P0A6L0 30155096
    340857 5el2:A (1.75) BS01 KBR N/A GO:0005549 ... N/A 27535661
    340858 5el2:A (1.75) BS02 KBR N/A GO:0005549 ... N/A 27535661
    340859 5el2:B (1.75) BS01 KBR N/A GO:0005549 ... N/A 27535661
    340860 5el2:B (1.75) BS02 KBR N/A GO:0005549 ... N/A 27535661
    340861 5el4:11 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    340862 5el4:12 (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    340863 5el4:15 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    340864 5el4:19 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    340865 5el4:19 (3.15) BS02 rna ? GO:0002181 ... P60405 26791911
    340866 5el4:19 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    340867 5el4:1A (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    340868 5el4:1E (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    340869 5el4:1I (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    340870 5el4:21 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26791911
    340871 5el4:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 26791911
    340872 5el4:22 (3.15) BS01 rna ? GO:0003729 ... P80372 26791911
    340873 5el4:25 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26791911
    340874 5el4:25 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26791911
    340875 5el4:29 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 26791911
    340876 5el4:2A (3.15) BS01 rna ? GO:0005840 ... P80376 26791911
    340877 5el4:2A (3.15) BS02 MG ? GO:0005840 ... P80376 26791911
    340878 5el4:2E (3.15) BS01 rna ? GO:0003729 ... P80372 26791911
    340879 5el4:2I (3.15) BS01 rna ? GO:0005840 ... P80376 26791911
    340880 5el4:2I (3.15) BS02 MG ? GO:0005840 ... P80376 26791911
    340881 5el4:31 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26791911
    340882 5el4:32 (3.15) BS01 rna ? GO:0003735 ... P80373 26791911
    340883 5el4:32 (3.15) BS02 SF4 ? GO:0003735 ... P80373 26791911
    340884 5el4:35 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26791911
    340885 5el4:39 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 26791911
    340886 5el4:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 26791911
    340887 5el4:3A (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26791911
    340888 5el4:3E (3.15) BS01 rna ? GO:0003735 ... P80373 26791911
    340889 5el4:3E (3.15) BS02 SF4 ? GO:0003735 ... P80373 26791911
    340890 5el4:3I (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 26791911
    340891 5el4:41 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26791911
    340892 5el4:41 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26791911
    340893 5el4:41 (3.15) BS03 MG ? GO:0000049 ... Q5SHQ0 26791911
    340894 5el4:42 (3.15) BS01 rna ? GO:0005840 ... Q5SHQ5 26791911
    340895 5el4:45 (3.15) BS01 rna ? GO:0000049 ... P60489 26791911
    340896 5el4:45 (3.15) BS02 rna ? GO:0000049 ... P60489 26791911
    340897 5el4:45 (3.15) BS03 rna ? GO:0000049 ... P60489 26791911
    340898 5el4:45 (3.15) BS04 rna ? GO:0000049 ... P60489 26791911
    340899 5el4:45 (3.15) BS05 MG ? GO:0000049 ... P60489 26791911
    340900 5el4:49 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 26791911
    340901 5el4:49 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 26791911
    340902 5el4:49 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 26791911
    340903 5el4:4A (3.15) BS01 rna ? GO:0000049 ... P80377 26791911
    340904 5el4:4E (3.15) BS01 rna ? GO:0005840 ... Q5SHQ5 26791911
    340905 5el4:4I (3.15) BS01 rna ? GO:0000049 ... P80377 26791911
    340906 5el4:51 (3.15) BS01 rna N/A N/A N/A 26791911
    340907 5el4:52 (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26791911
    340908 5el4:55 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26791911
    340909 5el4:58 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    340910 5el4:59 (3.15) BS01 rna N/A N/A N/A 26791911
    340911 5el4:5A (3.15) BS01 rna N/A N/A N/A 26791911
    340912 5el4:5E (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 26791911
    340913 5el4:5I (3.15) BS01 rna N/A N/A N/A 26791911
    340914 5el4:5I (3.15) BS02 ZN N/A N/A N/A 26791911
    340915 5el4:61 (3.15) BS01 rna ? GO:0005840 ... Q5SLQ1 26791911
    340916 5el4:62 (3.15) BS01 rna ? GO:0000049 ... P17291 26791911
    340917 5el4:62 (3.15) BS02 rna ? GO:0000049 ... P17291 26791911
    340918 5el4:65 (3.15) BS01 rna ? GO:0005737 ... Q5SHQ4 26791911
    340919 5el4:65 (3.15) BS02 rna ? GO:0005737 ... Q5SHQ4 26791911
    340920 5el4:68 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 26791911
    340921 5el4:68 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 26791911
    340922 5el4:69 (3.15) BS01 rna ? GO:0005840 ... Q5SLQ1 26791911
    340923 5el4:69 (3.15) BS02 rna ? GO:0005840 ... Q5SLQ1 26791911
    340924 5el4:6A (3.15) BS01 rna ? GO:0005737 ... Q5SJ76 26791911
    340925 5el4:6A (3.15) BS02 rna ? GO:0005737 ... Q5SJ76 26791911
    340926 5el4:6E (3.15) BS01 rna ? GO:0000049 ... P17291 26791911
    340927 5el4:6E (3.15) BS02 rna ? GO:0000049 ... P17291 26791911
    340928 5el4:6I (3.15) BS01 rna ? GO:0005737 ... Q5SJ76 26791911
    340929 5el4:6I (3.15) BS02 rna ? GO:0005737 ... Q5SJ76 26791911
    340930 5el4:71 (3.15) BS01 rna ? GO:0000049 ... Q5SLP7 26791911
    340931 5el4:71 (3.15) BS02 rna ? GO:0000049 ... Q5SLP7 26791911
    340932 5el4:72 (3.15) BS01 rna N/A N/A N/A 26791911
    340933 5el4:75 (3.15) BS01 rna ? GO:0003735 ... P60490 26791911
    340934 5el4:75 (3.15) BS02 rna ? GO:0003735 ... P60490 26791911
    340935 5el4:78 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 26791911
    340936 5el4:7A (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26791911
    340937 5el4:7E (3.15) BS01 rna N/A N/A N/A 26791911
    340938 5el4:7I (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 26791911
    340939 5el4:82 (3.15) BS01 rna ? GO:0000049 ... P80374 26791911
    340940 5el4:85 (3.15) BS01 rna ? GO:0000027 ... P60491 26791911
    340941 5el4:88 (3.15) BS01 rna ? GO:0000049 ... P60489 26791911
    340942 5el4:88 (3.15) BS02 rna ? GO:0000049 ... P60489 26791911
    340943 5el4:88 (3.15) BS03 rna ? GO:0000049 ... P60489 26791911
    340944 5el4:8A (3.15) BS01 rna N/A N/A N/A 26791911
    340945 5el4:8E (3.15) BS01 rna ? GO:0000049 ... P80374 26791911
    340946 5el4:8E (3.15) BS02 rna ? GO:0000049 ... P80374 26791911
    340947 5el4:8I (3.15) BS01 rna N/A N/A N/A 26791911
    340948 5el4:95 (3.15) BS01 rna ? GO:0003735 ... P60492 26791911
    340949 5el4:98 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 26791911
    340950 5el4:9A (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26791911
    340951 5el4:9I (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 26791911
    340952 5el4:A5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    340953 5el4:A8 (3.15) BS01 rna ? GO:0005737 ... Q5SHQ4 26791911
    340954 5el4:A8 (3.15) BS02 rna ? GO:0005737 ... Q5SHQ4 26791911
    340955 5el4:AA (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26791911
    340956 5el4:AI (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 26791911
    340957 5el4:B5 (3.15) BS01 rna ? GO:0005840 ... Q5SHP0 26791911
    340958 5el4:B8 (3.15) BS01 rna ? GO:0003735 ... P60490 26791911
    340959 5el4:B8 (3.15) BS02 rna ? GO:0003735 ... P60490 26791911
    340960 5el4:BA (3.15) BS01 rna ? GO:0005840 ... P80380 26791911
    340961 5el4:BI (3.15) BS01 rna ? GO:0005840 ... P80380 26791911
    340962 5el4:C5 (3.15) BS01 rna ? GO:0005840 ... Q5SHP9 26791911
    340963 5el4:C8 (3.15) BS01 rna ? GO:0000027 ... P60491 26791911
    340964 5el4:D5 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    340965 5el4:D8 (3.15) BS01 rna ? GO:0003735 ... P60492 26791911
    340966 5el4:E5 (3.15) BS01 rna ? GO:0003735 ... P60493 26791911
    340967 5el4:E5 (3.15) BS02 rna ? GO:0003735 ... P60493 26791911
    340968 5el4:E5 (3.15) BS03 rna ? GO:0003735 ... P60493 26791911
    340969 5el4:E8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 26791911
    340970 5el4:F5 (3.15) BS01 rna ? GO:0005840 ... P60494 26791911
    340971 5el4:F8 (3.15) BS01 rna ? GO:0005840 ... Q5SHP0 26791911
    340972 5el4:G5 (3.15) BS01 rna ? GO:0005840 ... Q5SHP6 26791911
    340973 5el4:G8 (3.15) BS01 rna ? GO:0005840 ... Q5SHP9 26791911
    340974 5el4:H5 (3.15) BS01 rna ? GO:0005840 ... Q5SHQ6 26791911
    340975 5el4:H5 (3.15) BS02 rna ? GO:0005840 ... Q5SHQ6 26791911
    340976 5el4:H8 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 26791911
    340977 5el4:I8 (3.15) BS01 rna ? GO:0003735 ... P60493 26791911
    340978 5el4:I8 (3.15) BS02 rna ? GO:0003735 ... P60493 26791911
    340979 5el4:J5 (3.15) BS01 rna ? GO:0005840 ... P80339 26791911
    340980 5el4:J8 (3.15) BS01 rna ? GO:0005840 ... P60494 26791911
    340981 5el4:K8 (3.15) BS01 rna ? GO:0005840 ... Q5SHP6 26791911
    340982 5el4:L5 (3.15) BS01 rna ? GO:0005840 ... P80340 26791911
    340983 5el4:L8 (3.15) BS01 rna ? GO:0005840 ... Q5SHQ6 26791911
    340984 5el4:L8 (3.15) BS02 rna ? GO:0005840 ... Q5SHQ6 26791911
    340985 5el4:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    340986 5el4:M8 (3.15) BS01 rna ? GO:0005840 ... Q5SJE1 26791911
    340987 5el4:N8 (3.15) BS01 rna ? GO:0005840 ... P80339 26791911
    340988 5el4:P8 (3.15) BS01 rna ? GO:0005840 ... P80340 26791911
    340989 5el4:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26791911
    340990 5el5:11 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    340991 5el5:11 (3.15) BS02 rna ? GO:0002181 ... P60405 26791911
    340992 5el5:11 (3.15) BS03 MG ? GO:0002181 ... P60405 26791911
    340993 5el5:11 (3.15) BS04 MG ? GO:0002181 ... P60405 26791911
    340994 5el5:12 (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    340995 5el5:15 (3.15) BS01 rna ? GO:0003729 ... P60488 26791911
    340996 5el5:19 (3.15) BS01 rna ? GO:0002181 ... P60405 26791911
    340997 5el5:19 (3.15) BS02 rna ? GO:0002181 ... P60405 26791911
    340998 5el5:1A (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911
    340999 5el5:1E (3.15) BS01 rna ? GO:0003735 ... P80371 26791911
    341000 5el5:1I (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 26791911

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).