SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    343401 5f5q:A (2.52) BS03 MMA ? GO:0005509 ... C0HJY1 27737777
    343402 5f5q:B (2.52) BS01 CA ? GO:0005509 ... C0HJY1 27737777
    343403 5f5q:B (2.52) BS02 MN ? GO:0005509 ... C0HJY1 27737777
    343404 5f5q:B (2.52) BS03 MMA ? GO:0005509 ... C0HJY1 27737777
    343405 5f5r:A (1.85) BS01 ANP ? GO:0005524 ... Q12931 26929380
    343406 5f5r:B (1.85) BS01 ANP ? GO:0005524 ... Q12931 26929380
    343407 5f5u:D (2.748) BS01 peptide ? N/A G0S1D3 27773687
    343408 5f5u:G (2.748) BS01 peptide ? N/A G0S1D3 27773687
    343409 5f5v:A (3.1) BS01 peptide ? N/A G0S1D3 27773687
    343410 5f5v:D (3.1) BS01 peptide ? N/A G0S1D3 27773687
    343411 5f5w:A (2.81) BS01 G5A 6.1.1.14 GO:0000166 ... O67081 27226617
    343412 5f5w:B (2.81) BS01 G5A 6.1.1.14 GO:0000166 ... O67081 27226617
    343413 5f5w:C (2.81) BS01 G5A 6.1.1.14 GO:0000166 ... O67081 27226617
    343414 5f5w:D (2.81) BS01 G5A 6.1.1.14 GO:0000166 ... O67081 27226617
    343415 5f5w:E (2.81) BS01 G5A 6.1.1.14 GO:0000166 ... O67081 27226617
    343416 5f5x:A (2.006) BS01 AMP ? GO:0000166 ... Q734X3 N/A
    343417 5f5x:B (2.006) BS01 AMP ? GO:0000166 ... Q734X3 N/A
    343418 5f5z:A (1.76) BS01 5VY ? N/A O60885 28336808 MOAD: Kd=86nM
    343419 5f60:A (1.35) BS01 5VZ ? N/A O60885 28336808 MOAD: Kd=43nM
    343420 5f61:A (1.45) BS01 5W0 ? N/A O60885 28336808 MOAD: Kd=35nM
    343421 5f61:B (1.45) BS01 5W0 ? N/A O60885 28336808 MOAD: Kd=35nM
    343422 5f62:A (1.35) BS01 5W1 ? N/A O60885 28336808 MOAD: Kd=6.8nM
    343423 5f63:A (1.45) BS01 5W2 ? N/A O60885 28336808 MOAD: Kd=12nM
    343424 5f67:A (1.76) BS01 peptide ? N/A Q24008 26853938
    343425 5f67:B (1.76) BS01 peptide ? N/A Q24008 26853938
    343426 5f6b:A (1.31) BS01 RET ? GO:0001523 ... P50120 N/A
    343427 5f6b:B (1.31) BS01 RET ? GO:0001523 ... P50120 N/A
    343428 5f6c:A (3.002) BS01 rna 3.1.26.12 GO:0003676 ... P21513 30270108
    343429 5f6c:A (3.002) BS02 MG 3.1.26.12 GO:0003676 ... P21513 30270108
    343430 5f6c:A (3.002) BS03 ZN 3.1.26.12 GO:0003676 ... P21513 30270108
    343431 5f6c:B (3.002) BS01 rna 3.1.26.12 GO:0003676 ... P21513 30270108
    343432 5f6c:B (3.002) BS02 MG 3.1.26.12 GO:0003676 ... P21513 30270108
    343433 5f6d:A (1.553) BS01 5VJ 2.3.2.- GO:0000122 ... P63279 27038327
    343434 5f6k:C (2.411) BS01 peptide 2.1.1.364 N/A Q8NEZ4 26886794
    343435 5f6k:C (2.411) BS02 peptide 2.1.1.364 N/A Q8NEZ4 26886794
    343436 5f6k:C (2.411) BS03 ZN 2.1.1.364 N/A Q8NEZ4 26886794
    343437 5f6k:C (2.411) BS04 SAH 2.1.1.364 N/A Q8NEZ4 26886794
    343438 5f6k:E (2.411) BS01 peptide 2.1.1.364 N/A Q8NEZ4 26886794
    343439 5f6k:E (2.411) BS02 ZN 2.1.1.364 N/A Q8NEZ4 26886794
    343440 5f6k:E (2.411) BS03 SAH 2.1.1.364 N/A Q8NEZ4 26886794
    343441 5f6l:A (1.9) BS01 peptide 2.1.1.-
    2.1.1.364
    N/A Q03164 26886794
    343442 5f6l:A (1.9) BS02 SAH 2.1.1.-
    2.1.1.364
    N/A Q03164 26886794 BindingDB: IC50=2300nM
    343443 5f6l:A (1.9) BS03 ZN 2.1.1.-
    2.1.1.364
    N/A Q03164 26886794
    343444 5f6l:B (1.9) BS01 peptide ? GO:0048188 ... Q9UBL3 26886794
    343445 5f6m:A (1.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27035972
    343446 5f6q:A (1.52) BS01 ZN 2.5.1.- GO:0000287 ... Q81W73 N/A
    343447 5f6q:B (1.52) BS01 ZN 2.5.1.- GO:0000287 ... Q81W73 N/A
    343448 5f6r:A (1.179) BS01 5VO 4.2.1.59
    5.3.3.14
    GO:0005737 ... Q8ZG80 N/A
    343449 5f6r:A (1.179) BS02 5VO 4.2.1.59
    5.3.3.14
    GO:0005737 ... Q8ZG80 N/A
    343450 5f6r:B (1.179) BS01 5VO 4.2.1.59
    5.3.3.14
    GO:0005737 ... Q8ZG80 N/A
    343451 5f6r:B (1.179) BS02 5VO 4.2.1.59
    5.3.3.14
    GO:0005737 ... Q8ZG80 N/A
    343452 5f6t:A (2.201) BS01 CA ? GO:0046872 ... O76764 27050260
    343453 5f6t:A (2.201) BS02 CA ? GO:0046872 ... O76764 27050260
    343454 5f6u:A (1.552) BS01 5VK 2.3.2.- GO:0000122 ... P63279 27038327 MOAD: ic50=3mM
    343455 5f6v:A (1.492) BS01 5VL 2.3.2.- GO:0000122 ... P63279 27038327 MOAD: ic50=5.8mM
    343456 5f6w:A (1.699) BS01 5VL 2.3.2.- GO:0000122 ... P63279 27038327 MOAD: ic50=5.8mM
    343457 5f6x:A (1.56) BS01 5VM 2.3.2.- GO:0000122 ... P63279 27038327
    343458 5f6y:A (1.14) BS01 5VM 2.3.2.- GO:0000122 ... P63279 27038327
    343459 5f6z:A (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343460 5f6z:A (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343461 5f6z:B (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343462 5f6z:B (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343463 5f6z:C (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343464 5f6z:C (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343465 5f6z:D (2.248) BS01 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343466 5f6z:D (2.248) BS02 BLA ? GO:0000302 ... A0A1D5B369 27688756
    343467 5f74:A (2.35) BS01 peptide ? GO:0004860 ... Q9CQV8 26984404
    343468 5f74:A (2.35) BS02 AMP ? GO:0004860 ... Q9CQV8 26984404 MOAD: Kd=7.6uM
    343469 5f75:A (2.0) BS01 CU ? GO:0046872 ... W0DP94 N/A
    343470 5f75:A (2.0) BS02 CU ? GO:0046872 ... W0DP94 N/A
    343471 5f75:B (2.0) BS01 CU ? GO:0046872 ... W0DP94 N/A
    343472 5f75:B (2.0) BS02 CU ? GO:0046872 ... W0DP94 N/A
    343473 5f75:C (2.0) BS01 CU ? GO:0046872 ... W0DP94 N/A
    343474 5f75:C (2.0) BS02 CU ? GO:0046872 ... W0DP94 N/A
    343475 5f75:D (2.0) BS01 CU ? GO:0046872 ... W0DP94 N/A
    343476 5f75:D (2.0) BS02 CU ? GO:0046872 ... W0DP94 N/A
    343477 5f76:A (1.95) BS01 MTA 2.4.2.28 GO:0003824 ... I0B503 27935959
    343478 5f76:B (1.95) BS01 MTA 2.4.2.28 GO:0003824 ... I0B503 27935959
    343479 5f76:B (1.95) BS02 MTA 2.4.2.28 GO:0003824 ... I0B503 27935959
    343480 5f76:C (1.95) BS01 MTA 2.4.2.28 GO:0003824 ... I0B503 27935959
    343481 5f77:A (2.02) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343482 5f77:B (2.02) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343483 5f77:C (2.02) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343484 5f79:A (2.4) BS01 4V7 ? N/A Q30NP1 28197323
    343485 5f7a:A (1.54) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343486 5f7a:A (1.54) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343487 5f7a:A (1.54) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    343488 5f7a:A (1.54) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    343489 5f7a:B (1.54) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343490 5f7a:B (1.54) BS02 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    343491 5f7a:B (1.54) BS03 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343492 5f7a:B (1.54) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    343493 5f7a:C (1.54) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    343494 5f7a:C (1.54) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343495 5f7a:C (1.54) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 26929369
    343496 5f7a:C (1.54) BS04 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343497 5f7b:A (1.56) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343498 5f7b:A (1.56) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343499 5f7b:B (1.56) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343500 5f7b:B (1.56) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343501 5f7b:C (1.56) BS01 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343502 5f7b:C (1.56) BS02 CU 1.7.2.1 GO:0005507 ... P38501 26929369
    343503 5f7d:A (2.3) BS01 peptide ? N/A P04439 28179428
    343504 5f7g:A (1.48) BS01 RET ? GO:0001523 ... P50120 N/A
    343505 5f7g:B (1.48) BS01 RET ? GO:0001523 ... P50120 N/A
    343506 5f7h:A (2.5) BS01 CA ? N/A Q96H15 N/A
    343507 5f7h:A (2.5) BS02 SEP ? N/A Q96H15 N/A
    343508 5f7h:B (2.5) BS01 CA ? N/A Q96H15 N/A
    343509 5f7h:B (2.5) BS02 SEP ? N/A Q96H15 N/A
    343510 5f7h:C (2.5) BS01 CA ? N/A Q96H15 N/A
    343511 5f7h:C (2.5) BS02 SEP ? N/A Q96H15 N/A
    343512 5f7h:D (2.5) BS01 CA ? N/A Q96H15 N/A
    343513 5f7h:D (2.5) BS02 SEP ? N/A Q96H15 N/A
    343514 5f7h:E (2.5) BS01 CA ? N/A Q96H15 N/A
    343515 5f7h:E (2.5) BS02 SEP ? N/A Q96H15 N/A
    343516 5f7h:F (2.5) BS01 CA ? N/A Q96H15 N/A
    343517 5f7h:F (2.5) BS02 SEP ? N/A Q96H15 N/A
    343518 5f7j:A (1.66) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343519 5f7j:B (1.66) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343520 5f7j:D (1.66) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343521 5f7j:E (1.66) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343522 5f7m:A (2.72) BS01 GAL ? N/A O52269 26764597
    343523 5f7m:A (2.72) BS02 FUC ? N/A O52269 26764597
    343524 5f7m:B (2.72) BS01 FUC ? N/A O52269 26764597
    343525 5f7n:A (2.28) BS01 FUC ? N/A O52269 26764597
    343526 5f7n:B (2.28) BS01 FUC ? N/A O52269 26764597
    343527 5f7o:A (1.8148) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343528 5f7o:B (1.8148) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    343529 5f7p:A (2.84) BS01 ZN ? GO:0042732 ... Q8YAF1 27819654
    343530 5f7p:E (2.84) BS01 ZN ? GO:0042732 ... Q8YAF1 27819654
    343531 5f7q:C (2.4) BS01 dna ? GO:0042732 ... Q8YAF1 27819654
    343532 5f7q:C (2.4) BS02 dna ? GO:0042732 ... Q8YAF1 27819654
    343533 5f7q:C (2.4) BS03 ZN ? GO:0042732 ... Q8YAF1 27819654
    343534 5f7q:E (2.4) BS01 dna ? GO:0042732 ... Q8YAF1 27819654
    343535 5f7q:E (2.4) BS02 dna ? GO:0042732 ... Q8YAF1 27819654
    343536 5f7q:E (2.4) BS03 ZN ? GO:0042732 ... Q8YAF1 27819654
    343537 5f7q:J (2.4) BS01 dna ? GO:0042732 ... Q8YAF1 27819654
    343538 5f7q:J (2.4) BS02 dna ? GO:0042732 ... Q8YAF1 27819654
    343539 5f7q:J (2.4) BS03 ZN ? GO:0042732 ... Q8YAF1 27819654
    343540 5f7q:L (2.4) BS01 dna ? GO:0042732 ... Q8YAF1 27819654
    343541 5f7q:L (2.4) BS02 dna ? GO:0042732 ... Q8YAF1 27819654
    343542 5f7q:L (2.4) BS03 ZN ? GO:0042732 ... Q8YAF1 27819654
    343543 5f7r:A (1.85) BS01 GLC ? GO:0042732 ... Q8YAF1 27819654
    343544 5f7r:A (1.85) BS02 GLC ? GO:0042732 ... Q8YAF1 27819654
    343545 5f7r:A (1.85) BS03 ZN ? GO:0042732 ... Q8YAF1 27819654
    343546 5f7r:E (1.85) BS01 GLC ? GO:0042732 ... Q8YAF1 27819654
    343547 5f7r:E (1.85) BS02 GLC ? GO:0042732 ... Q8YAF1 27819654
    343548 5f7r:E (1.85) BS03 ZN ? GO:0042732 ... Q8YAF1 27819654
    343549 5f7s:A (2.3) BS01 CA N/A GO:0003824 ... N/A 27819654
    343550 5f7s:B (2.3) BS01 CA N/A GO:0003824 ... N/A 27819654
    343551 5f7t:E (2.292) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343552 5f7t:E (2.292) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343553 5f7t:F (2.292) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343554 5f7t:F (2.292) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343555 5f7t:H (2.292) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343556 5f7t:H (2.292) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343557 5f7t:L (2.292) BS01 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343558 5f7t:L (2.292) BS02 ZN 2.3.2.27
    6.1.1.11
    GO:0000166 ... P34945
    Q0PF16
    27253059
    343559 5f7u:A (1.7) BS01 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343560 5f7u:A (1.7) BS02 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343561 5f7u:A (1.7) BS03 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343562 5f7u:A (1.7) BS04 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343563 5f7u:A (1.7) BS05 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343564 5f7u:A (1.7) BS06 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343565 5f7u:A (1.7) BS07 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343566 5f7u:A (1.7) BS08 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343567 5f7u:A (1.7) BS09 GLC ? GO:0003824 ... Q8Y4J2 27819654
    343568 5f7u:A (1.7) BS10 MG ? GO:0003824 ... Q8Y4J2 27819654
    343569 5f7u:A (1.7) BS11 MG ? GO:0003824 ... Q8Y4J2 27819654
    343570 5f7u:A (1.7) BS12 MG ? GO:0003824 ... Q8Y4J2 27819654
    343571 5f7u:A (1.7) BS13 MG ? GO:0003824 ... Q8Y4J2 27819654
    343572 5f7v:A (1.4) BS01 GLC ? GO:0005886 ... Q8YAE9 27819654
    343573 5f7v:A (1.4) BS02 GLC ? GO:0005886 ... Q8YAE9 27819654
    343574 5f7v:A (1.4) BS03 GLC ? GO:0005886 ... Q8YAE9 27819654
    343575 5f7v:A (1.4) BS04 GLC ? GO:0005886 ... Q8YAE9 27819654
    343576 5f7w:A (2.81) BS01 BGC ? N/A O52269 26764597
    343577 5f7w:A (2.81) BS02 GAL ? N/A O52269 26764597
    343578 5f7w:A (2.81) BS03 FUC ? N/A O52269 26764597
    343579 5f7w:A (2.81) BS04 GLA ? N/A O52269 26764597
    343580 5f7w:B (2.81) BS01 GAL ? N/A O52269 26764597
    343581 5f7w:B (2.81) BS02 FUC ? N/A O52269 26764597
    343582 5f7w:B (2.81) BS03 GLA ? N/A O52269 26764597
    343583 5f7x:A (1.77) BS01 TBN 2.4.2.28 GO:0003824 ... I0B503 27935959
    343584 5f7x:B (1.77) BS01 TBN 2.4.2.28 GO:0003824 ... I0B503 27935959
    343585 5f7x:C (1.77) BS01 TBN 2.4.2.28 GO:0003824 ... I0B503 27935959
    343586 5f7y:A (2.44) BS01 GAL ? N/A O52269 26764597
    343587 5f7y:A (2.44) BS02 FUC ? N/A O52269 26764597
    343588 5f7y:B (2.44) BS01 GAL ? N/A O52269 26764597
    343589 5f7y:B (2.44) BS02 FUC ? N/A O52269 26764597
    343590 5f83:A (1.38) BS01 IM2 3.5.2.6 GO:0008800 ... Q0Z8S4 27590339
    343591 5f83:B (1.38) BS01 IM2 3.5.2.6 GO:0008800 ... Q0Z8S4 27590339
    343592 5f84:A (2.5) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343593 5f84:A (2.5) BS02 BGC 2.4.1.- GO:0005783 ... Q8T045 27428513
    343594 5f85:A (2.15) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343595 5f87:A (3.2) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343596 5f87:B (3.2) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343597 5f87:C (3.2) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343598 5f87:D (3.2) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343599 5f87:E (3.2) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513
    343600 5f87:F (3.2) BS01 UDP 2.4.1.- GO:0005783 ... Q8T045 27428513

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).