SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    344001 5f9f:A (2.601) BS05 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344002 5f9f:C (2.601) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344003 5f9f:C (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344004 5f9f:C (2.601) BS03 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344005 5f9f:C (2.601) BS04 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344006 5f9f:C (2.601) BS05 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344007 5f9f:E (2.601) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344008 5f9f:E (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344009 5f9f:E (2.601) BS03 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344010 5f9f:E (2.601) BS04 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344011 5f9f:G (2.601) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344012 5f9f:G (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344013 5f9f:G (2.601) BS03 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344014 5f9f:G (2.601) BS04 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344015 5f9f:G (2.601) BS05 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344016 5f9f:I (2.601) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344017 5f9f:I (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344018 5f9f:I (2.601) BS03 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344019 5f9f:K (2.601) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344020 5f9f:K (2.601) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344021 5f9f:K (2.601) BS03 BU3 3.6.4.13 GO:0003676 ... O95786 26733676
    344022 5f9h:A (3.1) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344023 5f9h:A (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344024 5f9h:A (3.1) BS03 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    344025 5f9h:A (3.1) BS04 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    344026 5f9h:A (3.1) BS05 GTP 3.6.4.13 GO:0003676 ... O95786 26733676
    344027 5f9h:C (3.1) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344028 5f9h:C (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344029 5f9h:C (3.1) BS03 GTP 3.6.4.13 GO:0003676 ... O95786 26733676
    344030 5f9h:E (3.1) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344031 5f9h:E (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344032 5f9h:E (3.1) BS03 GTP 3.6.4.13 GO:0003676 ... O95786 26733676
    344033 5f9h:G (3.1) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344034 5f9h:G (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344035 5f9h:G (3.1) BS03 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    344036 5f9h:G (3.1) BS04 GTP 3.6.4.13 GO:0003676 ... O95786 26733676
    344037 5f9h:I (3.1) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344038 5f9h:I (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344039 5f9h:I (3.1) BS03 GTP 3.6.4.13 GO:0003676 ... O95786 26733676
    344040 5f9h:K (3.1) BS01 rna 3.6.4.13 GO:0003676 ... O95786 26733676
    344041 5f9h:K (3.1) BS02 ZN 3.6.4.13 GO:0003676 ... O95786 26733676
    344042 5f9h:K (3.1) BS03 MG 3.6.4.13 GO:0003676 ... O95786 26733676
    344043 5f9h:K (3.1) BS04 GTP 3.6.4.13 GO:0003676 ... O95786 26733676
    344044 5f9j:A (2.51) BS01 peptide ? N/A P04439 28179428
    344045 5f9k:A (2.179) BS01 DUP 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344046 5f9k:B (2.179) BS01 DUP 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344047 5f9k:B (2.179) BS02 MG 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344048 5f9k:B (2.179) BS03 MG 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344049 5f9k:B (2.179) BS04 DUP 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344050 5f9k:C (2.179) BS01 DUP 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344051 5f9k:C (2.179) BS02 DUP 3.6.1.23 GO:0000287 ... Q54BW5 31910901
    344052 5f9l:A (2.592) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344053 5f9l:A (2.592) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344054 5f9l:A (2.592) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344055 5f9l:A (2.592) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344056 5f9l:A (2.592) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344057 5f9n:A (2.23) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344058 5f9n:A (2.23) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344059 5f9n:A (2.23) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344060 5f9n:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344061 5f9n:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    344062 5f9r:B (3.4) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 26841432
    344063 5f9r:B (3.4) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 26841432
    344064 5f9r:B (3.4) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 26841432
    344065 5f9s:A (1.7) BS01 PLP 2.6.1.44
    2.6.1.51
    GO:0004760 ... P21549 28916765
    344066 5f9s:A (1.7) BS02 PLP 2.6.1.44
    2.6.1.51
    GO:0004760 ... P21549 28916765
    344067 5f9s:B (1.7) BS01 PLP 2.6.1.44
    2.6.1.51
    GO:0004760 ... P21549 28916765
    344068 5f9s:B (1.7) BS02 PLP 2.6.1.44
    2.6.1.51
    GO:0004760 ... P21549 28916765
    344069 5f9t:A (2.05) BS01 FSI 3.2.1.18 GO:0004308 ... A0A0B7LH44 26370075
    344070 5f9t:A (2.05) BS02 SFJ 3.2.1.18 GO:0004308 ... A0A0B7LH44 26370075
    344071 5f9t:B (2.05) BS01 FSI 3.2.1.18 GO:0004308 ... A0A0B7LH44 26370075
    344072 5f9t:B (2.05) BS02 SFJ 3.2.1.18 GO:0004308 ... A0A0B7LH44 26370075
    344073 5f9u:A (1.85) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    344074 5f9u:A (1.85) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    344075 5f9x:A (1.94) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    344076 5f9x:A (1.94) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    344077 5f9y:A (2.8) BS01 PRO N/A GO:0000166 ... N/A N/A
    344078 5f9y:A (2.8) BS02 AMP N/A GO:0000166 ... N/A N/A
    344079 5f9y:A (2.8) BS03 ZN N/A GO:0000166 ... N/A N/A
    344080 5f9y:B (2.8) BS01 PRO N/A GO:0000166 ... N/A N/A
    344081 5f9y:B (2.8) BS02 AMP N/A GO:0000166 ... N/A N/A
    344082 5f9y:B (2.8) BS03 ZN N/A GO:0000166 ... N/A N/A
    344083 5f9z:A (2.4) BS01 ANP N/A GO:0000166 ... N/A N/A
    344084 5f9z:A (2.4) BS02 HFG N/A GO:0000166 ... N/A N/A
    344085 5f9z:A (2.4) BS03 ZN N/A GO:0000166 ... N/A N/A
    344086 5f9z:B (2.4) BS01 ANP N/A GO:0000166 ... N/A N/A
    344087 5f9z:B (2.4) BS02 HFG N/A GO:0000166 ... N/A N/A
    344088 5f9z:B (2.4) BS03 ZN N/A GO:0000166 ... N/A N/A
    344089 5fa1:A (2.1) BS01 C5P ? GO:0000271 ... Q6U8B0 27199480
    344090 5fa1:B (2.1) BS01 C5P ? GO:0000271 ... Q6U8B0 27199480
    344091 5fa2:A (2.0) BS01 MAN ? GO:0019031 ... M4Q8P8 26997349
    344092 5fa3:A (1.86) BS01 peptide ? N/A P04439 28179428
    344093 5fa4:A (2.4) BS01 peptide ? N/A P04439 28179428
    344094 5fa5:A (2.34) BS01 peptide 2.1.1.320 GO:0000387 ... O14744 26912361
    344095 5fa5:A (2.34) BS02 MTA 2.1.1.320 GO:0000387 ... O14744 26912361 MOAD: ic50=4.6uM
    344096 5fa6:A (2.3) BS01 FMN 1.6.2.4 GO:0003958 ... P16435 27496950
    344097 5fa6:A (2.3) BS02 FAD 1.6.2.4 GO:0003958 ... P16435 27496950
    344098 5fa6:A (2.3) BS03 NAP 1.6.2.4 GO:0003958 ... P16435 27496950 MOAD: Ki=16.1uM
    344099 5fa6:B (2.3) BS01 FMN 1.6.2.4 GO:0003958 ... P16435 27496950
    344100 5fa6:B (2.3) BS02 FAD 1.6.2.4 GO:0003958 ... P16435 27496950
    344101 5fa6:B (2.3) BS03 NAP 1.6.2.4 GO:0003958 ... P16435 27496950 MOAD: Ki=16.1uM
    344102 5fa7:A (1.67) BS01 5VR 3.5.2.6 GO:0008800 ... Q9EXV5 26731698
    344103 5fa7:B (1.67) BS01 5VR 3.5.2.6 GO:0008800 ... Q9EXV5 26731698
    344104 5fa8:A (1.3) BS01 SAM ? GO:0005840 ... C3MWA1 27329856
    344105 5fa8:A (1.3) BS02 MG ? GO:0005840 ... C3MWA1 27329856
    344106 5fac:A (2.8) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344107 5fac:B (2.8) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344108 5fac:C (2.8) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344109 5fac:D (2.8) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344110 5fad:A (1.87) BS01 SAH ? GO:0005840 ... C3MWA1 27329856
    344111 5fad:A (1.87) BS02 MG ? GO:0005840 ... C3MWA1 27329856
    344112 5fae:A (1.7) BS01 CA ? GO:0051015 ... P06396 27633054
    344113 5faf:A (1.05) BS01 CA ? GO:0051015 ... P06396 27633054
    344114 5fag:A (1.51) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344115 5fag:B (1.51) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344116 5fag:C (1.51) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344117 5fag:D (1.51) BS01 PLP 5.1.1.1 GO:0003824 ... O86786 28042035
    344118 5fah:A (1.1) BS01 5VT 3.4.21.117 GO:0001533 ... P49862 27775713 MOAD: ic50=0.7uM
    344119 5fai:A (1.8) BS01 SAH 2.1.1.- GO:0001824 ... Q92979 N/A
    344120 5faj:A (1.64) BS01 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344121 5faj:A (1.64) BS02 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344122 5faj:B (1.64) BS01 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344123 5faj:B (1.64) BS02 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344124 5faj:C (1.64) BS01 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344125 5faj:C (1.64) BS02 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344126 5faj:D (1.64) BS01 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344127 5faj:D (1.64) BS02 DCS 5.1.1.1 GO:0003824 ... O86786 28042035
    344128 5fak:A (1.87) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    344129 5fak:B (1.87) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    344130 5fak:D (1.87) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    344131 5fak:E (1.87) BS01 ADE 2.4.2.28 GO:0003824 ... I0B503 27935959
    344132 5fal:A (1.861) BS01 COA ? GO:0016746 ... R9RYW2 26858288
    344133 5fal:A (1.861) BS02 SKT ? GO:0016746 ... R9RYW2 26858288
    344134 5fan:A (1.901) BS01 WCA ? GO:0016746 ... R9RYW2 26858288
    344135 5fao:A (3.01) BS01 5VW 3.5.2.6 GO:0008800 ... Q9EXV5 26731698
    344136 5fao:B (3.01) BS01 5VW 3.5.2.6 GO:0008800 ... Q9EXV5 26731698
    344137 5fap:A (2.7) BS01 602 3.5.2.6 GO:0008800 ... Q9EXV5 26731698
    344138 5fap:B (2.7) BS01 602 3.5.2.6 GO:0008800 ... Q9EXV5 26731698
    344139 5faq:A (1.96) BS01 5VW 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344140 5faq:B (1.96) BS01 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344141 5faq:B (1.96) BS02 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344142 5faq:B (1.96) BS03 5VW 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344143 5far:A (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344144 5far:A (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344145 5far:B (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344146 5far:B (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344147 5far:C (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344148 5far:C (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344149 5far:D (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344150 5far:E (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344151 5far:E (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344152 5far:F (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344153 5far:F (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344154 5far:G (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344155 5far:G (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344156 5far:H (2.0) BS01 9MG N/A GO:0004150 ... N/A N/A
    344157 5far:H (2.0) BS02 9MG N/A GO:0004150 ... N/A N/A
    344158 5fas:A (1.74) BS01 5VR 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344159 5fas:A (1.74) BS02 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344160 5fas:A (1.74) BS03 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344161 5fas:B (1.74) BS01 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344162 5fas:B (1.74) BS02 5VR 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344163 5fat:A (2.09) BS01 602 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344164 5fat:A (2.09) BS02 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344165 5fat:B (2.09) BS01 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344166 5fat:B (2.09) BS02 602 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344167 5fat:B (2.09) BS03 CO 3.5.2.6 GO:0005886 ... Q6XEC0 26731698
    344168 5fau:A (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344169 5fau:B (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344170 5fau:C (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344171 5fau:D (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344172 5faw:A (1.852) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344173 5faw:B (1.852) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344174 5fax:A (2.0) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    344175 5fax:A (2.0) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    344176 5fax:A (2.0) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    344177 5fax:B (2.0) BS01 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    344178 5fax:B (2.0) BS02 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    344179 5fax:B (2.0) BS03 CA 3.4.21.14 GO:0004252 ... A0A182DWC7 N/A
    344180 5fay:A (1.901) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344181 5fay:B (1.901) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    344182 5faz:A (1.4) BS01 RET ? GO:0001523 ... P50120 N/A
    344183 5faz:B (1.4) BS01 RET ? GO:0001523 ... P50120 N/A
    344184 5fb0:A (2.702) BS01 peptide ? N/A P23497 27129259
    344185 5fb0:A (2.702) BS02 ZN ? N/A P23497 27129259
    344186 5fb0:A (2.702) BS03 ZN ? N/A P23497 27129259
    344187 5fb0:C (2.702) BS01 peptide ? N/A P23497 27129259
    344188 5fb0:C (2.702) BS02 ZN ? N/A P23497 27129259
    344189 5fb0:C (2.702) BS03 ZN ? N/A P23497 27129259
    344190 5fb1:A (2.1) BS01 peptide ? N/A P23497 27129259
    344191 5fb1:A (2.1) BS02 ZN ? N/A P23497 27129259
    344192 5fb1:A (2.1) BS03 ZN ? N/A P23497 27129259
    344193 5fb2:A (1.8) BS01 dna ? GO:0003700 ... Q5Y812 N/A
    344194 5fb3:A (2.45) BS01 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    344195 5fb3:B (2.45) BS01 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    344196 5fb3:C (2.45) BS01 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    344197 5fb3:D (2.45) BS01 NDP 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    344198 5fb3:D (2.45) BS02 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    344199 5fb3:E (2.45) BS01 NDP 1.1.1.261 GO:0005737 ... A3MTM6 27616573
    344200 5fb3:E (2.45) BS02 ZN 1.1.1.261 GO:0005737 ... A3MTM6 27616573

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).