SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    344801 5fcj:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 26906928
    344802 5fcj:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 26906928
    344803 5fcj:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 26906928
    344804 5fcj:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 26906928
    344805 5fcj:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 26906928
    344806 5fcj:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 26906928
    344807 5fcj:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 26906928
    344808 5fcj:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 26906928
    344809 5fcj:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 26906928
    344810 5fcj:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 26906928
    344811 5fcj:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 26906928
    344812 5fcj:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 26906928
    344813 5fcj:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 26906928
    344814 5fcj:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 26906928
    344815 5fcj:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 26906928
    344816 5fcj:l2 (3.1) BS04 MG ? GO:0002181 ... P0CX45 26906928
    344817 5fcj:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 26906928
    344818 5fcj:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 26906928
    344819 5fcj:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 26906928
    344820 5fcj:l3 (3.1) BS04 MG ? GO:0000027 ... P14126 26906928
    344821 5fcj:l3 (3.1) BS05 MG ? GO:0000027 ... P14126 26906928
    344822 5fcj:l3 (3.1) BS06 MG ? GO:0000027 ... P14126 26906928
    344823 5fcj:l3 (3.1) BS07 OHX ? GO:0000027 ... P14126 26906928
    344824 5fcj:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 26906928
    344825 5fcj:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 26906928
    344826 5fcj:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 26906928
    344827 5fcj:l4 (3.1) BS04 OHX ? GO:0002181 ... P10664 26906928
    344828 5fcj:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 26906928
    344829 5fcj:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 26906928
    344830 5fcj:l5 (3.1) BS03 OHX ? GO:0000027 ... P26321 26906928
    344831 5fcj:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 26906928
    344832 5fcj:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 26906928
    344833 5fcj:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 26906928
    344834 5fcj:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 26906928
    344835 5fcj:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 26906928
    344836 5fcj:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 26906928
    344837 5fcj:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 26906928
    344838 5fcj:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 26906928
    344839 5fcj:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 26906928
    344840 5fcj:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 26906928
    344841 5fcj:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 26906928
    344842 5fcj:m1 (3.1) BS01 rna ? GO:0000027 ... P0C0W9 26906928
    344843 5fcj:m1 (3.1) BS02 rna ? GO:0000027 ... P0C0W9 26906928
    344844 5fcj:m1 (3.1) BS03 OHX ? GO:0000027 ... P0C0W9 26906928
    344845 5fcj:m2 (3.1) BS01 rna N/A N/A N/A 26906928
    344846 5fcj:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 26906928
    344847 5fcj:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 26906928
    344848 5fcj:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 26906928
    344849 5fcj:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 26906928
    344850 5fcj:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 26906928
    344851 5fcj:m5 (3.1) BS03 OHX ? GO:0002181 ... P05748 26906928
    344852 5fcj:m5 (3.1) BS04 MG ? GO:0002181 ... P05748 26906928
    344853 5fcj:m5 (3.1) BS05 MG ? GO:0002181 ... P05748 26906928
    344854 5fcj:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 26906928
    344855 5fcj:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 26906928
    344856 5fcj:m6 (3.1) BS03 MG ? GO:0000470 ... P26784 26906928
    344857 5fcj:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 26906928
    344858 5fcj:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 26906928
    344859 5fcj:m7 (3.1) BS03 MG ? GO:0000448 ... P05740 26906928
    344860 5fcj:m7 (3.1) BS04 OHX ? GO:0000448 ... P05740 26906928
    344861 5fcj:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 26906928
    344862 5fcj:m8 (3.1) BS02 MG ? GO:0002181 ... P0CX49 26906928
    344863 5fcj:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 26906928
    344864 5fcj:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 26906928
    344865 5fcj:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 26906928
    344866 5fcj:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 26906928
    344867 5fcj:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 26906928
    344868 5fcj:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 26906928
    344869 5fcj:n1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 26906928
    344870 5fcj:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 26906928
    344871 5fcj:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 26906928
    344872 5fcj:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 26906928
    344873 5fcj:n3 (3.1) BS03 OHX ? GO:0002181 ... P0CX41 26906928
    344874 5fcj:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 26906928
    344875 5fcj:n4 (3.1) BS02 rna ? GO:0002181 ... P04449 26906928
    344876 5fcj:n5 (3.1) BS01 rna ? GO:0000027 ... P04456 26906928
    344877 5fcj:n5 (3.1) BS02 rna ? GO:0000027 ... P04456 26906928
    344878 5fcj:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 26906928
    344879 5fcj:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 26906928
    344880 5fcj:n6 (3.1) BS03 OHX ? GO:0002181 ... P05743 26906928
    344881 5fcj:n7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 26906928
    344882 5fcj:n8 (3.1) BS01 rna ? GO:0002181 ... P02406 26906928
    344883 5fcj:n8 (3.1) BS02 MG ? GO:0002181 ... P02406 26906928
    344884 5fcj:n9 (3.1) BS01 rna ? GO:0002181 ... P05747 26906928
    344885 5fcj:n9 (3.1) BS02 OHX ? GO:0002181 ... P05747 26906928
    344886 5fcj:o0 (3.1) BS01 rna ? GO:0002181 ... P14120 26906928
    344887 5fcj:o1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 26906928
    344888 5fcj:o1 (3.1) BS02 MG ? GO:0002181 ... P0C2H8 26906928
    344889 5fcj:o2 (3.1) BS01 rna ? GO:0002181 ... P38061 26906928
    344890 5fcj:o3 (3.1) BS01 rna ? GO:0000027 ... P05744 26906928
    344891 5fcj:o3 (3.1) BS02 MG ? GO:0000027 ... P05744 26906928
    344892 5fcj:o3 (3.1) BS03 OHX ? GO:0000027 ... P05744 26906928
    344893 5fcj:o4 (3.1) BS01 rna ? GO:0002181 ... P87262 26906928
    344894 5fcj:o4 (3.1) BS02 MG ? GO:0002181 ... P87262 26906928
    344895 5fcj:o5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 26906928
    344896 5fcj:o5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 26906928
    344897 5fcj:o6 (3.1) BS01 rna ? GO:0002181 ... P05745 26906928
    344898 5fcj:o7 (3.1) BS01 rna ? GO:0000448 ... P49166 26906928
    344899 5fcj:o7 (3.1) BS02 rna ? GO:0000448 ... P49166 26906928
    344900 5fcj:o7 (3.1) BS03 ZN ? GO:0000448 ... P49166 26906928
    344901 5fcj:o7 (3.1) BS04 OHX ? GO:0000448 ... P49166 26906928
    344902 5fcj:o8 (3.1) BS01 rna ? GO:0002181 ... P49167 26906928
    344903 5fcj:o9 (3.1) BS01 rna ? GO:0002181 ... P04650 26906928
    344904 5fcj:o9 (3.1) BS02 rna ? GO:0002181 ... P04650 26906928
    344905 5fcj:o9 (3.1) BS03 OHX ? GO:0002181 ... P04650 26906928
    344906 5fcj:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 26906928
    344907 5fcj:q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 26906928
    344908 5fcj:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 26906928
    344909 5fcj:q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 26906928
    344910 5fcj:q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 26906928
    344911 5fcj:q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 26906928
    344912 5fcj:q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 26906928
    344913 5fcj:q3 (3.1) BS02 rna ? GO:0002181 ... P0CX25 26906928
    344914 5fcj:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 26906928
    344915 5fcj:s0 (3.1) BS01 rna ? GO:0000028 ... P32905 26906928
    344916 5fcj:s1 (3.1) BS01 rna ? GO:0000462 ... P33442 26906928
    344917 5fcj:s1 (3.1) BS02 OHX ? GO:0000462 ... P33442 26906928
    344918 5fcj:s2 (3.1) BS01 rna ? GO:0000054 ... P25443 26906928
    344919 5fcj:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 26906928
    344920 5fcj:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 26906928
    344921 5fcj:s4 (3.1) BS02 OHX ? GO:0002181 ... P0CX35 26906928
    344922 5fcj:s5 (3.1) BS01 rna ? GO:0000028 ... P26783 26906928
    344923 5fcj:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 26906928
    344924 5fcj:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 26906928
    344925 5fcj:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 26906928
    344926 5fcj:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 26906928
    344927 5fcj:s8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 26906928
    344928 5fcj:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 26906928
    344929 5fcj:s9 (3.1) BS02 OHX ? GO:0000462 ... O13516 26906928
    344930 5fcj:sM (3.1) BS01 rna ? N/A P39015 26906928
    344931 5fcj:sM (3.1) BS02 rna ? N/A P39015 26906928
    344932 5fcj:sM (3.1) BS03 MG ? N/A P39015 26906928
    344933 5fcj:sR (3.1) BS01 rna ? GO:0001965 ... P38011 26906928
    344934 5fcj:sR (3.1) BS02 OHX ? GO:0001965 ... P38011 26906928
    344935 5fck:A (1.86) BS01 5WC 3.4.21.46 GO:0004252 ... P00746 27775713 MOAD: Kd=0.006uM
    BindingDB: IC50=10nM
    344936 5fcp:A (1.55) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    344937 5fcp:A (1.55) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    344938 5fct:A (1.55) BS01 UFP 2.1.1.45 GO:0000900 ... P07607 N/A BindingDB: Ki=20nM, IC50=>10000nM
    344939 5fct:A (1.55) BS02 C2F 2.1.1.45 GO:0000900 ... P07607 N/A
    344940 5fct:A (1.55) BS03 UFP 2.1.1.45 GO:0000900 ... P07607 N/A BindingDB: Ki=20nM, IC50=>10000nM
    344941 5fct:B (1.55) BS01 UFP 2.1.1.45 GO:0000900 ... P07607 N/A BindingDB: Ki=20nM, IC50=>10000nM
    344942 5fct:B (1.55) BS02 UFP 2.1.1.45 GO:0000900 ... P07607 N/A BindingDB: Ki=20nM, IC50=>10000nM
    344943 5fct:B (1.55) BS03 C2F 2.1.1.45 GO:0000900 ... P07607 N/A
    344944 5fcw:A (1.979) BS01 5YA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062 MOAD: ic50=0.3uM
    BindingDB: IC50=300nM
    344945 5fcw:A (1.979) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062
    344946 5fcw:A (1.979) BS03 5YA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062 MOAD: ic50=0.3uM
    BindingDB: IC50=300nM
    344947 5fcw:B (1.979) BS01 5YA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062 MOAD: ic50=0.3uM
    BindingDB: IC50=300nM
    344948 5fcw:B (1.979) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062
    344949 5fcw:B (1.979) BS03 5YA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062 MOAD: ic50=0.3uM
    BindingDB: IC50=300nM
    344950 5fcw:B (1.979) BS04 5YA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 27374062 MOAD: ic50=0.3uM
    BindingDB: IC50=300nM
    344951 5fcx:A (3.206) BS01 45D ? GO:0009579 ... Q8YXT8 27392608
    344952 5fcx:B (3.206) BS01 45D ? GO:0009579 ... Q8YXT8 27392608
    344953 5fcz:A (2.45) BS01 TNX 3.2.1.52 GO:0004553 ... O85361 27253678 MOAD: Ki=68uM
    344954 5fd1:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 8245025
    344955 5fd1:A (1.9) BS02 F3S ? GO:0003677 ... P00214 8245025
    344956 5fd2:A (2.89) BS01 5XJ 2.7.11.1 GO:0004672 ... P15056 27085672
    344957 5fd2:B (2.89) BS01 5XJ 2.7.11.1 GO:0004672 ... P15056 27085672
    344958 5fd3:A (2.42) BS01 dna ? N/A Q6MZP7 27465258
    344959 5fd3:A (2.42) BS02 dna ? N/A Q6MZP7 27465258
    344960 5fd3:A (2.42) BS03 ZN ? N/A Q6MZP7 27465258
    344961 5fd3:A (2.42) BS04 ZN ? N/A Q6MZP7 27465258
    344962 5fd3:A (2.42) BS05 ZN ? N/A Q6MZP7 27465258
    344963 5fd3:A (2.42) BS06 ZN ? N/A Q6MZP7 27465258
    344964 5fd3:A (2.42) BS07 ZN ? N/A Q6MZP7 27465258
    344965 5fd3:A (2.42) BS08 ZN ? N/A Q6MZP7 27465258
    344966 5fd3:B (2.42) BS01 dna ? N/A Q6MZP7 27465258
    344967 5fd3:B (2.42) BS02 dna ? N/A Q6MZP7 27465258
    344968 5fd3:B (2.42) BS03 ZN ? N/A Q6MZP7 27465258
    344969 5fd3:B (2.42) BS04 ZN ? N/A Q6MZP7 27465258
    344970 5fd3:B (2.42) BS05 ZN ? N/A Q6MZP7 27465258
    344971 5fd3:B (2.42) BS06 ZN ? N/A Q6MZP7 27465258
    344972 5fd3:B (2.42) BS07 ZN ? N/A Q6MZP7 27465258
    344973 5fd3:B (2.42) BS08 ZN ? N/A Q6MZP7 27465258
    344974 5fd6:A (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    344975 5fd6:A (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    344976 5fd6:B (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    344977 5fd6:B (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    344978 5fd6:C (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    344979 5fd6:C (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    344980 5fd6:D (2.48) BS01 ZN ? GO:0000976 ... O07315 N/A
    344981 5fd6:D (2.48) BS02 ZN ? GO:0000976 ... O07315 N/A
    344982 5fd8:A (2.05) BS01 A5A ? GO:0016787 ... A0A6L8PVW7 N/A
    344983 5fd8:B (2.05) BS01 A5A ? GO:0016787 ... A0A6L8PVW7 N/A
    344984 5fdc:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27151329
    344985 5fdc:A (1.75) BS02 5WN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27151329 MOAD: Ki=34.8nM
    BindingDB: IC50=110000nM
    344986 5fdc:A (1.75) BS03 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27151329
    344987 5fdd:A (2.506) BS01 4P8 3.1.-.- GO:0003723 ... P03433 27088785 BindingDB: IC50=63000nM
    344988 5fdg:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    344989 5fdg:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    344990 5fdg:A (2.1) BS03 0N8 3.1.-.- GO:0003723 ... P03433 27088785 BindingDB: IC50=430nM
    344991 5fdi:A (1.85) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27151329
    344992 5fdi:A (1.85) BS02 5WM 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27151329 MOAD: Ki=18.5nM
    344993 5fdi:A (1.85) BS03 HGB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27151329
    344994 5fdk:A (3.208) BS01 dna 3.1.21.10 GO:0000287 ... P39792 27903910
    344995 5fdk:B (3.208) BS01 dna 3.1.21.10 GO:0000287 ... P39792 27903910
    344996 5fdk:B (3.208) BS02 dna 3.1.21.10 GO:0000287 ... P39792 27903910
    344997 5fdk:C (3.208) BS01 dna 3.1.21.10 GO:0000287 ... P39792 27903910
    344998 5fdl:A (3.1) BS01 5DV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 26804933
    344999 5fdn:A (2.2) BS01 ASP 4.1.1.31 GO:0003824 ... Q84VW9 N/A
    345000 5fdn:B (2.2) BS01 ASP 4.1.1.31 GO:0003824 ... Q84VW9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).