SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    345201 5fdu:2P (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 26792896
    345202 5fdu:2P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    345203 5fdu:2Q (2.9) BS01 rna ? GO:0000049 ... P60489 26792896
    345204 5fdu:2Q (2.9) BS02 rna ? GO:0000049 ... P60489 26792896
    345205 5fdu:2Q (2.9) BS03 MG ? GO:0000049 ... P60489 26792896
    345206 5fdu:2Q (2.9) BS04 MG ? GO:0000049 ... P60489 26792896
    345207 5fdu:2R (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 26792896
    345208 5fdu:2R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    345209 5fdu:2R (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    345210 5fdu:2S (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 26792896
    345211 5fdu:2S (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 26792896
    345212 5fdu:2T (2.9) BS01 rna ? GO:0003735 ... P60490 26792896
    345213 5fdu:2T (2.9) BS02 rna ? GO:0003735 ... P60490 26792896
    345214 5fdu:2U (2.9) BS01 rna ? GO:0000027 ... P60491 26792896
    345215 5fdu:2U (2.9) BS02 MG ? GO:0000027 ... P60491 26792896
    345216 5fdu:2U (2.9) BS03 MG ? GO:0000027 ... P60491 26792896
    345217 5fdu:2V (2.9) BS01 rna ? GO:0003723 ... P60492 26792896
    345218 5fdu:2V (2.9) BS02 MG ? GO:0003723 ... P60492 26792896
    345219 5fdu:2V (2.9) BS03 MG ? GO:0003723 ... P60492 26792896
    345220 5fdu:2V (2.9) BS04 MG ? GO:0003723 ... P60492 26792896
    345221 5fdu:2V (2.9) BS05 MG ? GO:0003723 ... P60492 26792896
    345222 5fdu:2W (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 26792896
    345223 5fdu:2W (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 26792896
    345224 5fdu:2X (2.9) BS01 rna ? GO:0003735 ... Q5SHP0 26792896
    345225 5fdu:2Y (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 26792896
    345226 5fdu:2Y (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    345227 5fdu:2Z (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 26792896
    345228 5fdu:2Z (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 26792896
    345229 5fdu:2b (2.9) BS01 rna ? GO:0003735 ... P80371 26792896
    345230 5fdu:2b (2.9) BS02 MG ? GO:0003735 ... P80371 26792896
    345231 5fdu:2c (2.9) BS01 rna ? GO:0003676 ... P80372 26792896
    345232 5fdu:2d (2.9) BS01 rna ? GO:0003723 ... P80373 26792896
    345233 5fdu:2d (2.9) BS02 SF4 ? GO:0003723 ... P80373 26792896
    345234 5fdu:2d (2.9) BS03 MG ? GO:0003723 ... P80373 26792896
    345235 5fdu:2d (2.9) BS04 MG ? GO:0003723 ... P80373 26792896
    345236 5fdu:2e (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 26792896
    345237 5fdu:2f (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 26792896
    345238 5fdu:2f (2.9) BS02 MG ? GO:0003735 ... Q5SLP8 26792896
    345239 5fdu:2g (2.9) BS01 rna ? GO:0000049 ... P17291 26792896
    345240 5fdu:2h (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    345241 5fdu:2i (2.9) BS01 rna ? GO:0000049 ... P80374 26792896
    345242 5fdu:2j (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 26792896
    345243 5fdu:2k (2.9) BS01 rna ? GO:0003735 ... P80376 26792896
    345244 5fdu:2k (2.9) BS02 MG ? GO:0003735 ... P80376 26792896
    345245 5fdu:2l (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 26792896
    345246 5fdu:2l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    345247 5fdu:2m (2.9) BS01 rna ? GO:0000049 ... P80377 26792896
    345248 5fdu:2m (2.9) BS02 MG ? GO:0000049 ... P80377 26792896
    345249 5fdu:2n (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    345250 5fdu:2n (2.9) BS02 ZN N/A GO:0003735 ... N/A 26792896
    345251 5fdu:2n (2.9) BS03 MG N/A GO:0003735 ... N/A 26792896
    345252 5fdu:2o (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 26792896
    345253 5fdu:2o (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 26792896
    345254 5fdu:2p (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 26792896
    345255 5fdu:2q (2.9) BS01 rna N/A GO:0003735 ... N/A 26792896
    345256 5fdu:2r (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 26792896
    345257 5fdu:2s (2.9) BS01 rna ? GO:0003723 ... Q5SHP2 26792896
    345258 5fdu:2t (2.9) BS01 rna ? GO:0003723 ... P80380 26792896
    345259 5fdu:2x (2.9) BS01 rna ? GO:0044238 ... P0AD49 26792896
    345260 5fdv:10 (2.8) BS01 rna ? GO:0003735 ... P60493 26792896
    345261 5fdv:10 (2.8) BS02 rna ? GO:0003735 ... P60493 26792896
    345262 5fdv:10 (2.8) BS03 MG ? GO:0003735 ... P60493 26792896
    345263 5fdv:10 (2.8) BS04 MG ? GO:0003735 ... P60493 26792896
    345264 5fdv:11 (2.8) BS01 rna ? GO:0003735 ... P60494 26792896
    345265 5fdv:11 (2.8) BS02 MG ? GO:0003735 ... P60494 26792896
    345266 5fdv:12 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 26792896
    345267 5fdv:13 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 26792896
    345268 5fdv:13 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 26792896
    345269 5fdv:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    345270 5fdv:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 26792896
    345271 5fdv:14 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 26792896
    345272 5fdv:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    345273 5fdv:15 (2.8) BS01 rna ? GO:0003735 ... P80339 26792896
    345274 5fdv:15 (2.8) BS02 MG ? GO:0003735 ... P80339 26792896
    345275 5fdv:15 (2.8) BS03 ZN ? GO:0003735 ... P80339 26792896
    345276 5fdv:16 (2.8) BS01 rna ? GO:0000049 ... P35871 26792896
    345277 5fdv:16 (2.8) BS02 ZN ? GO:0000049 ... P35871 26792896
    345278 5fdv:17 (2.8) BS01 rna ? GO:0003735 ... P80340 26792896
    345279 5fdv:17 (2.8) BS02 MG ? GO:0003735 ... P80340 26792896
    345280 5fdv:17 (2.8) BS03 MG ? GO:0003735 ... P80340 26792896
    345281 5fdv:18 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 26792896
    345282 5fdv:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 26792896
    345283 5fdv:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 26792896
    345284 5fdv:19 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 26792896
    345285 5fdv:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 26792896
    345286 5fdv:1D (2.8) BS01 rna ? GO:0002181 ... P60405 26792896
    345287 5fdv:1D (2.8) BS02 MG ? GO:0002181 ... P60405 26792896
    345288 5fdv:1D (2.8) BS03 MG ? GO:0002181 ... P60405 26792896
    345289 5fdv:1D (2.8) BS04 MG ? GO:0002181 ... P60405 26792896
    345290 5fdv:1D (2.8) BS05 MG ? GO:0002181 ... P60405 26792896
    345291 5fdv:1D (2.8) BS06 MG ? GO:0002181 ... P60405 26792896
    345292 5fdv:1D (2.8) BS07 MG ? GO:0002181 ... P60405 26792896
    345293 5fdv:1D (2.8) BS08 MG ? GO:0002181 ... P60405 26792896
    345294 5fdv:1D (2.8) BS09 MG ? GO:0002181 ... P60405 26792896
    345295 5fdv:1D (2.8) BS10 MG ? GO:0002181 ... P60405 26792896
    345296 5fdv:1D (2.8) BS11 MG ? GO:0002181 ... P60405 26792896
    345297 5fdv:1D (2.8) BS12 MG ? GO:0002181 ... P60405 26792896
    345298 5fdv:1E (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 26792896
    345299 5fdv:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 26792896
    345300 5fdv:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 26792896
    345301 5fdv:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 26792896
    345302 5fdv:1F (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 26792896
    345303 5fdv:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 26792896
    345304 5fdv:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 26792896
    345305 5fdv:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 26792896
    345306 5fdv:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 26792896
    345307 5fdv:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 26792896
    345308 5fdv:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 26792896
    345309 5fdv:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 26792896
    345310 5fdv:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 26792896
    345311 5fdv:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 26792896
    345312 5fdv:1F (2.8) BS11 MG ? GO:0003735 ... Q5SHN9 26792896
    345313 5fdv:1F (2.8) BS12 MG ? GO:0003735 ... Q5SHN9 26792896
    345314 5fdv:1F (2.8) BS13 MG ? GO:0003735 ... Q5SHN9 26792896
    345315 5fdv:1G (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 26792896
    345316 5fdv:1G (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 26792896
    345317 5fdv:1G (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 26792896
    345318 5fdv:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 26792896
    345319 5fdv:1G (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 26792896
    345320 5fdv:1H (2.8) BS01 rna N/A GO:0003735 ... N/A 26792896
    345321 5fdv:1I (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 26792896
    345322 5fdv:1N (2.8) BS01 rna ? GO:0003729 ... P60488 26792896
    345323 5fdv:1N (2.8) BS02 MG ? GO:0003729 ... P60488 26792896
    345324 5fdv:1O (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 26792896
    345325 5fdv:1O (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 26792896
    345326 5fdv:1P (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 26792896
    345327 5fdv:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 26792896
    345328 5fdv:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 26792896
    345329 5fdv:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 26792896
    345330 5fdv:1Q (2.8) BS01 rna ? GO:0000049 ... P60489 26792896
    345331 5fdv:1Q (2.8) BS02 rna ? GO:0000049 ... P60489 26792896
    345332 5fdv:1Q (2.8) BS03 MG ? GO:0000049 ... P60489 26792896
    345333 5fdv:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 26792896
    345334 5fdv:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 26792896
    345335 5fdv:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 26792896
    345336 5fdv:1R (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 26792896
    345337 5fdv:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 26792896
    345338 5fdv:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 26792896
    345339 5fdv:1S (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 26792896
    345340 5fdv:1S (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 26792896
    345341 5fdv:1T (2.8) BS01 rna ? GO:0003735 ... P60490 26792896
    345342 5fdv:1T (2.8) BS02 rna ? GO:0003735 ... P60490 26792896
    345343 5fdv:1U (2.8) BS01 rna ? GO:0000027 ... P60491 26792896
    345344 5fdv:1U (2.8) BS02 MG ? GO:0000027 ... P60491 26792896
    345345 5fdv:1U (2.8) BS03 MG ? GO:0000027 ... P60491 26792896
    345346 5fdv:1U (2.8) BS04 MG ? GO:0000027 ... P60491 26792896
    345347 5fdv:1U (2.8) BS05 MG ? GO:0000027 ... P60491 26792896
    345348 5fdv:1U (2.8) BS06 MG ? GO:0000027 ... P60491 26792896
    345349 5fdv:1U (2.8) BS07 MG ? GO:0000027 ... P60491 26792896
    345350 5fdv:1V (2.8) BS01 rna ? GO:0003723 ... P60492 26792896
    345351 5fdv:1V (2.8) BS02 MG ? GO:0003723 ... P60492 26792896
    345352 5fdv:1V (2.8) BS03 MG ? GO:0003723 ... P60492 26792896
    345353 5fdv:1V (2.8) BS04 MG ? GO:0003723 ... P60492 26792896
    345354 5fdv:1W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 26792896
    345355 5fdv:1X (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 26792896
    345356 5fdv:1Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 26792896
    345357 5fdv:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 26792896
    345358 5fdv:1Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 26792896
    345359 5fdv:1Z (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 26792896
    345360 5fdv:1b (2.8) BS01 rna ? GO:0003735 ... P80371 26792896
    345361 5fdv:1b (2.8) BS02 MG ? GO:0003735 ... P80371 26792896
    345362 5fdv:1c (2.8) BS01 rna ? GO:0003676 ... P80372 26792896
    345363 5fdv:1d (2.8) BS01 rna ? GO:0003723 ... P80373 26792896
    345364 5fdv:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26792896
    345365 5fdv:1e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 26792896
    345366 5fdv:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 26792896
    345367 5fdv:1f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 26792896
    345368 5fdv:1g (2.8) BS01 rna ? GO:0000049 ... P17291 26792896
    345369 5fdv:1h (2.8) BS01 rna N/A GO:0003735 ... N/A 26792896
    345370 5fdv:1i (2.8) BS01 rna ? GO:0000049 ... P80374 26792896
    345371 5fdv:1j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 26792896
    345372 5fdv:1k (2.8) BS01 rna ? GO:0003735 ... P80376 26792896
    345373 5fdv:1k (2.8) BS02 MG ? GO:0003735 ... P80376 26792896
    345374 5fdv:1l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 26792896
    345375 5fdv:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 26792896
    345376 5fdv:1m (2.8) BS01 rna ? GO:0000049 ... P80377 26792896
    345377 5fdv:1m (2.8) BS02 rna ? GO:0000049 ... P80377 26792896
    345378 5fdv:1m (2.8) BS03 MG ? GO:0000049 ... P80377 26792896
    345379 5fdv:1n (2.8) BS01 rna N/A GO:0003735 ... N/A 26792896
    345380 5fdv:1n (2.8) BS02 ZN N/A GO:0003735 ... N/A 26792896
    345381 5fdv:1o (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 26792896
    345382 5fdv:1o (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 26792896
    345383 5fdv:1p (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 26792896
    345384 5fdv:1q (2.8) BS01 rna N/A GO:0003735 ... N/A 26792896
    345385 5fdv:1r (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 26792896
    345386 5fdv:1s (2.8) BS01 rna ? GO:0003723 ... Q5SHP2 26792896
    345387 5fdv:1t (2.8) BS01 rna ? GO:0003723 ... P80380 26792896
    345388 5fdv:1t (2.8) BS02 MG ? GO:0003723 ... P80380 26792896
    345389 5fdv:1x (2.8) BS01 rna ? GO:0044238 ... P0AD49 26792896
    345390 5fdv:20 (2.8) BS01 rna ? GO:0003735 ... P60493 26792896
    345391 5fdv:20 (2.8) BS02 rna ? GO:0003735 ... P60493 26792896
    345392 5fdv:20 (2.8) BS03 MG ? GO:0003735 ... P60493 26792896
    345393 5fdv:21 (2.8) BS01 rna ? GO:0003735 ... P60494 26792896
    345394 5fdv:22 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 26792896
    345395 5fdv:23 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 26792896
    345396 5fdv:23 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 26792896
    345397 5fdv:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 26792896
    345398 5fdv:24 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 26792896
    345399 5fdv:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 26792896
    345400 5fdv:25 (2.8) BS01 rna ? GO:0003735 ... P80339 26792896

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).