SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    348601 5g6g:A (1.981) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348602 5g6g:A (1.981) BS03 H8B 1.14.14.47 GO:0004517 ... O34453 27607918
    348603 5g6h:A (1.911) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348604 5g6h:A (1.911) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348605 5g6h:A (1.911) BS03 M85 1.14.14.47 GO:0004517 ... O34453 27607918
    348606 5g6i:A (1.981) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348607 5g6i:A (1.981) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348608 5g6i:A (1.981) BS03 M85 1.14.14.47 GO:0004517 ... O34453 27607918
    348609 5g6j:A (1.88) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348610 5g6j:A (1.88) BS02 M94 1.14.14.47 GO:0004517 ... O34453 27607918
    348611 5g6k:A (1.951) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348612 5g6k:A (1.951) BS02 M94 1.14.14.47 GO:0004517 ... O34453 27607918
    348613 5g6l:A (2.034) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348614 5g6l:A (2.034) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348615 5g6l:A (2.034) BS03 XEB 1.14.14.47 GO:0004517 ... O34453 27607918
    348616 5g6m:A (1.77) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348617 5g6m:A (1.77) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348618 5g6m:A (1.77) BS03 9M9 1.14.14.47 GO:0004517 ... O34453 27607918
    348619 5g6n:A (1.91) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348620 5g6n:A (1.91) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348621 5g6n:A (1.91) BS03 8VJ 1.14.14.47 GO:0004517 ... O34453 27607918
    348622 5g6o:A (1.719) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348623 5g6o:A (1.719) BS02 8VJ 1.14.14.47 GO:0004517 ... O34453 27607918
    348624 5g6o:A (1.719) BS03 8VJ 1.14.14.47 GO:0004517 ... O34453 27607918
    348625 5g6p:A (2.18) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348626 5g6p:A (2.18) BS02 8VJ 1.14.14.47 GO:0004517 ... O34453 27607918
    348627 5g6p:A (2.18) BS03 8VJ 1.14.14.47 GO:0004517 ... O34453 27607918
    348628 5g6q:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 27607918
    348629 5g6q:A (2.03) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 27607918
    348630 5g6q:A (2.03) BS03 TUE 1.14.14.47 GO:0004517 ... O34453 27607918
    348631 5g6r:A (1.82) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348632 5g6r:B (1.82) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348633 5g6s:A (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348634 5g6s:A (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348635 5g6s:A (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348636 5g6s:A (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348637 5g6s:B (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348638 5g6s:B (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348639 5g6s:B (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348640 5g6s:B (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348641 5g6s:C (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348642 5g6s:C (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348643 5g6s:C (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348644 5g6s:C (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348645 5g6s:D (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348646 5g6s:D (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348647 5g6s:D (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348648 5g6s:D (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348649 5g6s:E (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348650 5g6s:E (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348651 5g6s:E (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348652 5g6s:E (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348653 5g6s:F (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348654 5g6s:F (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348655 5g6s:F (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348656 5g6s:F (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348657 5g6s:G (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348658 5g6s:G (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348659 5g6s:G (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348660 5g6s:G (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348661 5g6s:H (2.35) BS01 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348662 5g6s:H (2.35) BS02 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348663 5g6s:H (2.35) BS03 NDP 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348664 5g6s:H (2.35) BS04 RAU 1.1.1.- GO:0016491 ... Q2TW47 28937665
    348665 5g6t:A (2.15) BS01 ZN 3.2.1.52 GO:0004553 ... Q9HZK0 28482153
    348666 5g6t:B (2.15) BS01 ZN 3.2.1.52 GO:0004553 ... Q9HZK0 28482153
    348667 5g6u:A (1.844) BS01 TRP ? N/A Q9UJ71 29272097
    348668 5g6u:A (1.844) BS02 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    348669 5g6u:A (1.844) BS03 CA ? N/A Q9UJ71 29272097
    348670 5g6u:B (1.844) BS01 TRP ? N/A Q9UJ71 29272097
    348671 5g6u:B (1.844) BS02 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    348672 5g6u:B (1.844) BS03 CA ? N/A Q9UJ71 29272097
    348673 5g6u:B (1.844) BS04 TRP ? N/A Q9UJ71 29272097
    348674 5g6u:C (1.844) BS01 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    348675 5g6u:C (1.844) BS02 CA ? N/A Q9UJ71 29272097
    348676 5g6u:D (1.844) BS01 TRP ? N/A Q9UJ71 29272097
    348677 5g6u:D (1.844) BS02 TRP ? N/A Q9UJ71 29272097
    348678 5g6u:D (1.844) BS03 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    348679 5g6u:D (1.844) BS04 CA ? N/A Q9UJ71 29272097
    348680 5g6v:A (2.2) BS01 919 2.7.11.22 GO:0004672 ... Q00536 28057719
    348681 5g6v:B (2.2) BS01 919 2.7.11.22 GO:0004672 ... Q00536 28057719
    348682 5gad:C (3.7) BS01 rna ? GO:0000027 ... P60422 26804923
    348683 5gad:D (3.7) BS01 rna ? GO:0000027 ... P60438 26804923
    348684 5gad:E (3.7) BS01 rna ? GO:0001070 ... P60723 26804923
    348685 5gad:F (3.7) BS01 rna ? GO:0000027 ... P62399 26804923
    348686 5gad:F (3.7) BS02 rna ? GO:0000027 ... P62399 26804923
    348687 5gad:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 26804923
    348688 5gad:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    348689 5gad:I (3.7) BS01 rna ? GO:0002181 ... P0A7J3 26804923
    348690 5gad:J (3.7) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    348691 5gad:K (3.7) BS01 rna ? GO:0002181 ... P0AA10 26804923
    348692 5gad:L (3.7) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    348693 5gad:M (3.7) BS01 rna ? GO:0002181 ... P02413 26804923
    348694 5gad:N (3.7) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    348695 5gad:N (3.7) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    348696 5gad:O (3.7) BS01 rna ? GO:0000027 ... P0AG44 26804923
    348697 5gad:P (3.7) BS01 rna ? GO:0002181 ... P0C018 26804923
    348698 5gad:P (3.7) BS02 rna ? GO:0002181 ... P0C018 26804923
    348699 5gad:Q (3.7) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    348700 5gad:R (3.7) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    348701 5gad:S (3.7) BS01 rna ? GO:0002181 ... P0AG48 26804923
    348702 5gad:T (3.7) BS01 rna ? GO:0002181 ... P61175 26804923
    348703 5gad:U (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    348704 5gad:V (3.7) BS01 rna ? GO:0000027 ... P60624 26804923
    348705 5gad:W (3.7) BS01 rna ? GO:0000027 ... P68919 26804923
    348706 5gad:X (3.7) BS01 rna ? GO:0000027 ... P0A7L8 26804923
    348707 5gad:X (3.7) BS02 rna ? GO:0000027 ... P0A7L8 26804923
    348708 5gad:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    348709 5gad:Z (3.7) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    348710 5gad:a (3.7) BS01 rna ? GO:0000027 ... P0AG51 26804923
    348711 5gad:b (3.7) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    348712 5gad:c (3.7) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    348713 5gad:d (3.7) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    348714 5gad:e (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    348715 5gad:f (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    348716 5gad:f (3.7) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    348717 5gad:i (3.7) BS01 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348718 5gad:i (3.7) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348719 5gad:i (3.7) BS03 peptide 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348720 5gad:i (3.7) BS04 GNP 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348721 5gad:l (3.7) BS01 rna 3.6.5.4 GO:0003924 ... P10121 26804923
    348722 5gad:l (3.7) BS02 GNP 3.6.5.4 GO:0003924 ... P10121 26804923
    348723 5gad:l (3.7) BS03 GNP 3.6.5.4 GO:0003924 ... P10121 26804923
    348724 5gae:C (3.33) BS01 rna ? GO:0000027 ... P60422 26804923
    348725 5gae:D (3.33) BS01 rna ? GO:0000027 ... P60438 26804923
    348726 5gae:E (3.33) BS01 rna ? GO:0001070 ... P60723 26804923
    348727 5gae:F (3.33) BS01 rna ? GO:0000027 ... P62399 26804923
    348728 5gae:F (3.33) BS02 rna ? GO:0000027 ... P62399 26804923
    348729 5gae:G (3.33) BS01 rna ? GO:0000027 ... P0AG55 26804923
    348730 5gae:H (3.33) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    348731 5gae:I (3.33) BS01 rna ? GO:0002181 ... P0A7J3 26804923
    348732 5gae:J (3.33) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    348733 5gae:K (3.33) BS01 rna ? GO:0002181 ... P0AA10 26804923
    348734 5gae:L (3.33) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    348735 5gae:M (3.33) BS01 rna ? GO:0002181 ... P02413 26804923
    348736 5gae:N (3.33) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    348737 5gae:N (3.33) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    348738 5gae:O (3.33) BS01 rna ? GO:0000027 ... P0AG44 26804923
    348739 5gae:P (3.33) BS01 rna ? GO:0002181 ... P0C018 26804923
    348740 5gae:P (3.33) BS02 rna ? GO:0002181 ... P0C018 26804923
    348741 5gae:Q (3.33) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    348742 5gae:R (3.33) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    348743 5gae:S (3.33) BS01 rna ? GO:0002181 ... P0AG48 26804923
    348744 5gae:T (3.33) BS01 rna ? GO:0002181 ... P61175 26804923
    348745 5gae:U (3.33) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    348746 5gae:V (3.33) BS01 rna ? GO:0000027 ... P60624 26804923
    348747 5gae:W (3.33) BS01 rna ? GO:0000027 ... P68919 26804923
    348748 5gae:X (3.33) BS01 rna ? GO:0000027 ... P0A7L8 26804923
    348749 5gae:Y (3.33) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    348750 5gae:Z (3.33) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    348751 5gae:a (3.33) BS01 rna ? GO:0000027 ... P0AG51 26804923
    348752 5gae:a (3.33) BS02 rna ? GO:0000027 ... P0AG51 26804923
    348753 5gae:b (3.33) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    348754 5gae:c (3.33) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    348755 5gae:d (3.33) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    348756 5gae:e (3.33) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    348757 5gae:f (3.33) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    348758 5gae:g (3.33) BS01 rna ? GO:0005048 ... P0AGA2 26804923
    348759 5gae:g (3.33) BS02 peptide ? GO:0005048 ... P0AGA2 26804923
    348760 5gaf:C (4.3) BS01 rna ? GO:0000027 ... P60422 26804923
    348761 5gaf:D (4.3) BS01 rna ? GO:0000027 ... P60438 26804923
    348762 5gaf:E (4.3) BS01 rna ? GO:0001070 ... P60723 26804923
    348763 5gaf:F (4.3) BS01 rna ? GO:0000027 ... P62399 26804923
    348764 5gaf:F (4.3) BS02 rna ? GO:0000027 ... P62399 26804923
    348765 5gaf:G (4.3) BS01 rna ? GO:0000027 ... P0AG55 26804923
    348766 5gaf:H (4.3) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    348767 5gaf:I (4.3) BS01 rna ? GO:0003735 ... P0A7J3 26804923
    348768 5gaf:J (4.3) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    348769 5gaf:K (4.3) BS01 rna ? GO:0002181 ... P0AA10 26804923
    348770 5gaf:L (4.3) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    348771 5gaf:M (4.3) BS01 rna ? GO:0002181 ... P02413 26804923
    348772 5gaf:N (4.3) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    348773 5gaf:N (4.3) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    348774 5gaf:O (4.3) BS01 rna ? GO:0000027 ... P0AG44 26804923
    348775 5gaf:P (4.3) BS01 rna ? GO:0002181 ... P0C018 26804923
    348776 5gaf:P (4.3) BS02 rna ? GO:0002181 ... P0C018 26804923
    348777 5gaf:Q (4.3) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    348778 5gaf:R (4.3) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    348779 5gaf:S (4.3) BS01 rna ? GO:0002181 ... P0AG48 26804923
    348780 5gaf:T (4.3) BS01 rna ? GO:0002181 ... P61175 26804923
    348781 5gaf:U (4.3) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    348782 5gaf:V (4.3) BS01 rna ? GO:0000027 ... P60624 26804923
    348783 5gaf:W (4.3) BS01 rna ? GO:0000027 ... P68919 26804923
    348784 5gaf:X (4.3) BS01 rna ? GO:0003735 ... P0A7L8 26804923
    348785 5gaf:X (4.3) BS02 rna ? GO:0003735 ... P0A7L8 26804923
    348786 5gaf:Y (4.3) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    348787 5gaf:Z (4.3) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    348788 5gaf:a (4.3) BS01 rna ? GO:0000027 ... P0AG51 26804923
    348789 5gaf:b (4.3) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    348790 5gaf:c (4.3) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    348791 5gaf:d (4.3) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    348792 5gaf:e (4.3) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    348793 5gaf:f (4.3) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    348794 5gaf:f (4.3) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    348795 5gaf:i (4.3) BS01 rna 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    348796 5gaf:i (4.3) BS02 rna 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    348797 5gaf:i (4.3) BS03 peptide 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    348798 5gaf:i (4.3) BS04 GNP 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    348799 5gag:C (3.8) BS01 rna ? GO:0000027 ... P60422 26804923
    348800 5gag:D (3.8) BS01 rna ? GO:0000027 ... P60438 26804923

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).