SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    348801 5gag:E (3.8) BS01 rna ? GO:0001070 ... P60723 26804923
    348802 5gag:F (3.8) BS01 rna ? GO:0000027 ... P62399 26804923
    348803 5gag:F (3.8) BS02 rna ? GO:0000027 ... P62399 26804923
    348804 5gag:G (3.8) BS01 rna ? GO:0000027 ... P0AG55 26804923
    348805 5gag:H (3.8) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    348806 5gag:I (3.8) BS01 rna ? GO:0002181 ... P0A7J3 26804923
    348807 5gag:J (3.8) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    348808 5gag:K (3.8) BS01 rna ? GO:0002181 ... P0AA10 26804923
    348809 5gag:L (3.8) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    348810 5gag:M (3.8) BS01 rna ? GO:0002181 ... P02413 26804923
    348811 5gag:N (3.8) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    348812 5gag:N (3.8) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    348813 5gag:O (3.8) BS01 rna ? GO:0000027 ... P0AG44 26804923
    348814 5gag:P (3.8) BS01 rna ? GO:0002181 ... P0C018 26804923
    348815 5gag:P (3.8) BS02 rna ? GO:0002181 ... P0C018 26804923
    348816 5gag:Q (3.8) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    348817 5gag:R (3.8) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    348818 5gag:S (3.8) BS01 rna ? GO:0002181 ... P0AG48 26804923
    348819 5gag:T (3.8) BS01 rna ? GO:0002181 ... P61175 26804923
    348820 5gag:U (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    348821 5gag:V (3.8) BS01 rna ? GO:0000027 ... P60624 26804923
    348822 5gag:W (3.8) BS01 rna ? GO:0000027 ... P68919 26804923
    348823 5gag:X (3.8) BS01 rna ? GO:0000027 ... P0A7L8 26804923
    348824 5gag:X (3.8) BS02 rna ? GO:0000027 ... P0A7L8 26804923
    348825 5gag:Y (3.8) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    348826 5gag:Z (3.8) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    348827 5gag:a (3.8) BS01 rna ? GO:0000027 ... P0AG51 26804923
    348828 5gag:b (3.8) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    348829 5gag:c (3.8) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    348830 5gag:d (3.8) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    348831 5gag:e (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    348832 5gag:f (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    348833 5gag:f (3.8) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    348834 5gag:i (3.8) BS01 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348835 5gag:i (3.8) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348836 5gag:i (3.8) BS03 peptide 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348837 5gah:C (3.8) BS01 rna ? GO:0000027 ... P60422 26804923
    348838 5gah:D (3.8) BS01 rna ? GO:0000027 ... P60438 26804923
    348839 5gah:E (3.8) BS01 rna ? GO:0001070 ... P60723 26804923
    348840 5gah:F (3.8) BS01 rna ? GO:0000027 ... P62399 26804923
    348841 5gah:F (3.8) BS02 rna ? GO:0000027 ... P62399 26804923
    348842 5gah:G (3.8) BS01 rna ? GO:0000027 ... P0AG55 26804923
    348843 5gah:H (3.8) BS01 rna ? GO:0002181 ... P0A7R1 26804923
    348844 5gah:I (3.8) BS01 rna ? GO:0002181 ... P0A7J3 26804923
    348845 5gah:J (3.8) BS01 rna ? GO:0000027 ... P0A7J7 26804923
    348846 5gah:K (3.8) BS01 rna ? GO:0002181 ... P0AA10 26804923
    348847 5gah:L (3.8) BS01 rna ? GO:0002181 ... P0ADY3 26804923
    348848 5gah:M (3.8) BS01 rna ? GO:0002181 ... P02413 26804923
    348849 5gah:N (3.8) BS01 rna ? GO:0000027 ... P0ADY7 26804923
    348850 5gah:N (3.8) BS02 rna ? GO:0000027 ... P0ADY7 26804923
    348851 5gah:O (3.8) BS01 rna ? GO:0000027 ... P0AG44 26804923
    348852 5gah:P (3.8) BS01 rna ? GO:0002181 ... P0C018 26804923
    348853 5gah:P (3.8) BS02 rna ? GO:0002181 ... P0C018 26804923
    348854 5gah:Q (3.8) BS01 rna ? GO:0000027 ... P0A7K6 26804923
    348855 5gah:R (3.8) BS01 rna ? GO:0000027 ... P0A7L3 26804923
    348856 5gah:S (3.8) BS01 rna ? GO:0002181 ... P0AG48 26804923
    348857 5gah:T (3.8) BS01 rna ? GO:0002181 ... P61175 26804923
    348858 5gah:U (3.8) BS01 rna ? GO:0000027 ... P0ADZ0 26804923
    348859 5gah:V (3.8) BS01 rna ? GO:0000027 ... P60624 26804923
    348860 5gah:W (3.8) BS01 rna ? GO:0000027 ... P68919 26804923
    348861 5gah:X (3.8) BS01 rna ? GO:0000027 ... P0A7L8 26804923
    348862 5gah:X (3.8) BS02 rna ? GO:0000027 ... P0A7L8 26804923
    348863 5gah:Y (3.8) BS01 rna ? GO:0000027 ... P0A7M2 26804923
    348864 5gah:Z (3.8) BS01 rna ? GO:0000027 ... P0A7M6 26804923
    348865 5gah:a (3.8) BS01 rna ? GO:0000027 ... P0AG51 26804923
    348866 5gah:b (3.8) BS01 rna ? GO:0000027 ... P0A7N4 26804923
    348867 5gah:c (3.8) BS01 rna ? GO:0000027 ... P0A7N9 26804923
    348868 5gah:d (3.8) BS01 rna ? GO:0002181 ... P0A7P5 26804923
    348869 5gah:e (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 26804923
    348870 5gah:f (3.8) BS01 rna ? GO:0002181 ... P0A7Q6 26804923
    348871 5gah:f (3.8) BS02 ZN ? GO:0002181 ... P0A7Q6 26804923
    348872 5gah:i (3.8) BS01 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348873 5gah:i (3.8) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348874 5gah:i (3.8) BS03 peptide 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    348875 5gak:C (3.88) BS01 rna ? GO:0002181 ... P0CX27 26715760
    348876 5gak:D (3.88) BS01 rna ? GO:0002181 ... P0CX25 26715760
    348877 5gak:E (3.88) BS01 rna ? GO:0002181 ... P0CX45 26715760
    348878 5gak:F (3.88) BS01 rna ? GO:0000027 ... P14126 26715760
    348879 5gak:G (3.88) BS01 rna ? GO:0002181 ... P10664 26715760
    348880 5gak:G (3.88) BS02 rna ? GO:0002181 ... P10664 26715760
    348881 5gak:H (3.88) BS01 rna ? GO:0000027 ... P26321 26715760
    348882 5gak:H (3.88) BS02 rna ? GO:0000027 ... P26321 26715760
    348883 5gak:I (3.88) BS01 rna ? GO:0000027 ... Q02326 26715760
    348884 5gak:J (3.88) BS01 rna ? GO:0000463 ... P05737 26715760
    348885 5gak:J (3.88) BS02 rna ? GO:0000463 ... P05737 26715760
    348886 5gak:K (3.88) BS01 rna ? GO:0000470 ... P17076 26715760
    348887 5gak:K (3.88) BS02 rna ? GO:0000470 ... P17076 26715760
    348888 5gak:L (3.88) BS01 rna ? GO:0002181 ... P05738 26715760
    348889 5gak:M (3.88) BS01 rna ? GO:0000027 ... P0C0W9 26715760
    348890 5gak:M (3.88) BS02 rna ? GO:0000027 ... P0C0W9 26715760
    348891 5gak:M (3.88) BS03 rna ? GO:0000027 ... P0C0W9 26715760
    348892 5gak:N (3.88) BS01 rna ? GO:0002181 ... Q12690 26715760
    348893 5gak:N (3.88) BS02 rna ? GO:0002181 ... Q12690 26715760
    348894 5gak:O (3.88) BS01 rna ? GO:0000027 ... P36105 26715760
    348895 5gak:P (3.88) BS01 rna ? GO:0002181 ... P05748 26715760
    348896 5gak:P (3.88) BS02 rna ? GO:0002181 ... P05748 26715760
    348897 5gak:Q (3.88) BS01 rna ? GO:0000470 ... P26784 26715760
    348898 5gak:R (3.88) BS01 rna ? GO:0000448 ... P05740 26715760
    348899 5gak:R (3.88) BS02 rna ? GO:0000448 ... P05740 26715760
    348900 5gak:S (3.88) BS01 rna ? GO:0002181 ... P0CX49 26715760
    348901 5gak:T (3.88) BS01 rna ? GO:0002181 ... P0CX82 26715760
    348902 5gak:U (3.88) BS01 rna ? GO:0002181 ... P0CX23 26715760
    348903 5gak:U (3.88) BS02 rna ? GO:0002181 ... P0CX23 26715760
    348904 5gak:V (3.88) BS01 rna ? GO:0002181 ... Q02753 26715760
    348905 5gak:V (3.88) BS02 rna ? GO:0002181 ... Q02753 26715760
    348906 5gak:W (3.88) BS01 rna ? GO:0002181 ... P05749 26715760
    348907 5gak:X (3.88) BS01 rna ? GO:0002181 ... P0CX41 26715760
    348908 5gak:Y (3.88) BS01 rna ? GO:0002181 ... P04449 26715760
    348909 5gak:Z (3.88) BS01 rna ? GO:0000027 ... P04456 26715760
    348910 5gak:Z (3.88) BS02 rna ? GO:0000027 ... P04456 26715760
    348911 5gak:a (3.88) BS01 rna ? GO:0002181 ... P05743 26715760
    348912 5gak:a (3.88) BS02 rna ? GO:0002181 ... P05743 26715760
    348913 5gak:b (3.88) BS01 rna ? GO:0002181 ... P0C2H6 26715760
    348914 5gak:c (3.88) BS01 rna ? GO:0002181 ... P02406 26715760
    348915 5gak:d (3.88) BS01 rna ? GO:0002181 ... P05747 26715760
    348916 5gak:e (3.88) BS01 rna ? GO:0002181 ... P14120 26715760
    348917 5gak:f (3.88) BS01 rna ? GO:0002181 ... P0C2H8 26715760
    348918 5gak:g (3.88) BS01 rna ? GO:0002181 ... P38061 26715760
    348919 5gak:h (3.88) BS01 rna ? GO:0000027 ... P05744 26715760
    348920 5gak:i (3.88) BS01 rna ? GO:0002181 ... P87262 26715760
    348921 5gak:j (3.88) BS01 rna ? GO:0000463 ... P0CX84 26715760
    348922 5gak:j (3.88) BS02 rna ? GO:0000463 ... P0CX84 26715760
    348923 5gak:k (3.88) BS01 rna ? GO:0002181 ... P05745 26715760
    348924 5gak:l (3.88) BS01 rna ? GO:0000448 ... P49166 26715760
    348925 5gak:l (3.88) BS02 rna ? GO:0000448 ... P49166 26715760
    348926 5gak:m (3.88) BS01 rna ? GO:0002181 ... P49167 26715760
    348927 5gak:n (3.88) BS01 rna ? GO:0002181 ... P04650 26715760
    348928 5gak:n (3.88) BS02 rna ? GO:0002181 ... P04650 26715760
    348929 5gak:o (3.88) BS01 rna ? GO:0000027 ... P0CH08 26715760
    348930 5gak:q (3.88) BS01 rna ? GO:0002182 ... P23301 26715760
    348931 5gak:q (3.88) BS02 rna ? GO:0002182 ... P23301 26715760
    348932 5gak:r (3.88) BS01 rna N/A N/A N/A 26715760
    348933 5gak:s (3.88) BS01 rna ? GO:0000027 ... P41805 26715760
    348934 5gak:s (3.88) BS02 rna ? GO:0000027 ... P41805 26715760
    348935 5gak:s (3.88) BS03 rna ? GO:0000027 ... P41805 26715760
    348936 5gak:s (3.88) BS04 rna ? GO:0000027 ... P41805 26715760
    348937 5gal:B (2.0) BS01 GAL ? GO:0005515 ... P47929 9760227
    348938 5gam:A (3.7) BS01 rna ? GO:0000398 ... P33334 26829225
    348939 5gam:A (3.7) BS02 rna ? GO:0000398 ... P33334 26829225
    348940 5gam:C (3.7) BS01 rna ? GO:0000244 ... P36048 26829225
    348941 5gam:C (3.7) BS02 GTP ? GO:0000244 ... P36048 26829225
    348942 5gam:b (3.7) BS01 rna ? GO:0000243 ... P40018 26829225
    348943 5gam:d (3.7) BS01 rna ? GO:0000243 ... P43321 26829225
    348944 5gam:f (3.7) BS01 rna ? GO:0000243 ... P54999 26829225
    348945 5gam:g (3.7) BS01 rna ? GO:0000243 ... P40204 26829225
    348946 5gam:h (3.7) BS01 rna ? GO:0000243 ... Q02260 26829225
    348947 5gam:j (3.7) BS01 rna ? GO:0000243 ... Q06217 26829225
    348948 5gan:2 (3.7) BS01 rna ? GO:0000290 ... P38203 26829225
    348949 5gan:3 (3.7) BS01 rna ? GO:0000290 ... P57743 26829225
    348950 5gan:4 (3.7) BS01 rna ? GO:0000290 ... P40070 26829225
    348951 5gan:8 (3.7) BS01 rna ? GO:0000398 ... P47093 26829225
    348952 5gan:A (3.7) BS01 rna ? GO:0000244 ... P33334 26829225
    348953 5gan:A (3.7) BS02 rna ? GO:0000244 ... P33334 26829225
    348954 5gan:A (3.7) BS03 rna ? GO:0000244 ... P33334 26829225
    348955 5gan:B (3.7) BS01 rna 3.6.4.13 GO:0000388 ... P32639 26829225
    348956 5gan:B (3.7) BS02 rna 3.6.4.13 GO:0000388 ... P32639 26829225
    348957 5gan:C (3.7) BS01 rna ? GO:0000244 ... P36048 26829225
    348958 5gan:C (3.7) BS02 GTP ? GO:0000244 ... P36048 26829225
    348959 5gan:D (3.7) BS01 rna ? GO:0000398 ... Q06819 26829225
    348960 5gan:F (3.7) BS01 rna ? GO:0000244 ... P49704 26829225
    348961 5gan:F (3.7) BS02 rna ? GO:0000244 ... P49704 26829225
    348962 5gan:G (3.7) BS01 rna ? GO:0000245 ... Q03338 26829225
    348963 5gan:G (3.7) BS02 rna ? GO:0000245 ... Q03338 26829225
    348964 5gan:J (3.7) BS01 rna ? GO:0000244 ... P19735 26829225
    348965 5gan:K (3.7) BS01 rna ? GO:0000245 ... P39990 26829225
    348966 5gan:K (3.7) BS02 rna ? GO:0000245 ... P39990 26829225
    348967 5gan:b (3.7) BS01 rna ? GO:0000243 ... P40018 26829225
    348968 5gan:d (3.7) BS01 rna ? GO:0000243 ... P43321 26829225
    348969 5gan:f (3.7) BS01 rna ? GO:0000243 ... P54999 26829225
    348970 5gan:g (3.7) BS01 rna ? GO:0000243 ... P40204 26829225
    348971 5gan:h (3.7) BS01 rna ? GO:0000243 ... Q02260 26829225
    348972 5gan:j (3.7) BS01 rna ? GO:0000243 ... Q06217 26829225
    348973 5gan:k (3.7) BS01 rna ? GO:0000243 ... P40018 26829225
    348974 5gan:l (3.7) BS01 rna ? GO:0000243 ... Q02260 26829225
    348975 5gan:m (3.7) BS01 rna ? GO:0000243 ... Q06217 26829225
    348976 5gan:n (3.7) BS01 rna ? GO:0000243 ... P43321 26829225
    348977 5gan:p (3.7) BS01 rna ? GO:0000243 ... Q12330 26829225
    348978 5gan:q (3.7) BS01 rna ? GO:0000243 ... P54999 26829225
    348979 5gan:r (3.7) BS01 rna ? GO:0000243 ... P40204 26829225
    348980 5gan:x (3.7) BS01 rna N/A N/A N/A 26829225
    348981 5gao:B (4.2) BS01 rna 3.6.4.13 GO:0000388 ... P32639 26829225
    348982 5gao:k (4.2) BS01 rna ? GO:0000243 ... P40018 26829225
    348983 5gao:l (4.2) BS01 rna ? GO:0000243 ... Q02260 26829225
    348984 5gao:m (4.2) BS01 rna ? GO:0000243 ... Q06217 26829225
    348985 5gao:n (4.2) BS01 rna ? GO:0000243 ... P43321 26829225
    348986 5gao:p (4.2) BS01 rna ? GO:0000243 ... Q12330 26829225
    348987 5gao:q (4.2) BS01 rna ? GO:0000243 ... P54999 26829225
    348988 5gao:r (4.2) BS01 rna ? GO:0000243 ... P40204 26829225
    348989 5gap:A (3.6) BS01 rna ? GO:0000244 ... P33334 26829225
    348990 5gap:A (3.6) BS02 rna ? GO:0000244 ... P33334 26829225
    348991 5gap:A (3.6) BS03 rna ? GO:0000244 ... P33334 26829225
    348992 5gap:B (3.6) BS01 rna 3.6.4.13 GO:0000388 ... P32639 26829225
    348993 5gap:D (3.6) BS01 rna ? GO:0000398 ... Q06819 26829225
    348994 5gap:F (3.6) BS01 rna ? GO:0000244 ... P49704 26829225
    348995 5gap:F (3.6) BS02 rna ? GO:0000244 ... P49704 26829225
    348996 5gap:G (3.6) BS01 rna ? GO:0000245 ... Q03338 26829225
    348997 5gap:G (3.6) BS02 rna ? GO:0000245 ... Q03338 26829225
    348998 5gap:J (3.6) BS01 rna ? GO:0000244 ... P19735 26829225
    348999 5gap:K (3.6) BS01 rna ? GO:0000245 ... P39990 26829225
    349000 5gap:K (3.6) BS02 rna ? GO:0000245 ... P39990 26829225

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).