SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    349201 5gip:B (3.129) BS05 rna ? GO:0005515 ... Q97ZH3 27625427
    349202 5gip:C (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    349203 5gip:C (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    349204 5gip:D (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    349205 5gip:D (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    349206 5gip:E (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349207 5gip:E (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349208 5gip:E (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    349209 5gip:F (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349210 5gip:F (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349211 5gip:F (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    349212 5gip:K (3.129) BS01 rna ? GO:0005515 ... Q97ZH3 27625427
    349213 5gip:K (3.129) BS02 rna ? GO:0005515 ... Q97ZH3 27625427
    349214 5gip:K (3.129) BS03 rna ? GO:0005515 ... Q97ZH3 27625427
    349215 5gip:K (3.129) BS04 rna ? GO:0005515 ... Q97ZH3 27625427
    349216 5gip:L (3.129) BS01 rna ? GO:0005515 ... Q97ZH3 27625427
    349217 5gip:L (3.129) BS02 rna ? GO:0005515 ... Q97ZH3 27625427
    349218 5gip:L (3.129) BS03 rna ? GO:0005515 ... Q97ZH3 27625427
    349219 5gip:L (3.129) BS04 rna ? GO:0005515 ... Q97ZH3 27625427
    349220 5gip:M (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    349221 5gip:M (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    349222 5gip:N (3.129) BS01 rna ? GO:0001682 ... P55858 27625427
    349223 5gip:N (3.129) BS02 rna ? GO:0001682 ... P55858 27625427
    349224 5gip:O (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349225 5gip:O (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349226 5gip:O (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    349227 5gip:P (3.129) BS01 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349228 5gip:P (3.129) BS02 rna 2.1.1.- GO:0000494 ... P58032 27625427
    349229 5gip:P (3.129) BS03 SAH 2.1.1.- GO:0000494 ... P58032 27625427
    349230 5giq:A (1.8) BS01 ZN ? GO:0004177 ... Q9RUY4 30536999
    349231 5giq:A (1.8) BS02 ZN ? GO:0004177 ... Q9RUY4 30536999
    349232 5gir:A (1.93) BS01 peptide N/A N/A N/A 27553275
    349233 5gir:B (1.93) BS01 peptide N/A N/A N/A 27553275
    349234 5gir:B (1.93) BS02 peptide N/A N/A N/A 27553275
    349235 5gir:H (1.93) BS01 peptide N/A N/A N/A 27553275
    349236 5gir:L (1.93) BS01 peptide N/A N/A N/A 27553275
    349237 5gir:L (1.93) BS02 peptide N/A N/A N/A 27553275
    349238 5gis:H (1.93) BS01 peptide N/A N/A N/A 27553275
    349239 5gis:L (1.93) BS01 peptide N/A N/A N/A 27553275
    349240 5giv:A (2.4) BS01 ZN 3.4.17.19 GO:0004180 ... Q9RRR3 28844748
    349241 5giv:B (2.4) BS01 ZN 3.4.17.19 GO:0004180 ... Q9RRR3 28844748
    349242 5giv:C (2.4) BS01 ZN 3.4.17.19 GO:0004180 ... Q9RRR3 28844748
    349243 5giv:D (2.4) BS01 ZN 3.4.17.19 GO:0004180 ... Q9RRR3 28844748
    349244 5giv:E (2.4) BS01 ZN 3.4.17.19 GO:0004180 ... Q9RRR3 28844748
    349245 5giv:F (2.4) BS01 ZN 3.4.17.19 GO:0004180 ... Q9RRR3 28844748
    349246 5gix:A (2.801) BS01 6WF ? GO:0003677 ... P02768 27441502
    349247 5gix:B (2.801) BS01 6WF ? GO:0003677 ... P02768 27441502
    349248 5giy:A (2.543) BS01 7GE ? GO:0003677 ... P02768 N/A
    349249 5giy:A (2.543) BS02 7GE ? GO:0003677 ... P02768 N/A
    349250 5gj3:A (2.0) BS01 HEM ? N/A A5UZ69 28913898
    349251 5gj3:A (2.0) BS02 HEM ? N/A A5UZ69 28913898
    349252 5gj3:A (2.0) BS03 ZN ? N/A A5UZ69 28913898
    349253 5gj3:A (2.0) BS04 ZN ? N/A A5UZ69 28913898
    349254 5gj9:A (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349255 5gj9:A (2.1) BS02 VGL 1.14.17.4 GO:0005507 ... Q41931 28604689
    349256 5gj9:B (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349257 5gj9:B (2.1) BS02 VGL 1.14.17.4 GO:0005507 ... Q41931 28604689
    349258 5gja:A (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349259 5gja:A (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349260 5gja:B (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349261 5gja:B (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349262 5gja:C (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349263 5gja:C (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349264 5gja:D (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349265 5gja:D (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349266 5gja:E (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349267 5gja:E (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349268 5gja:F (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349269 5gja:F (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349270 5gja:G (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349271 5gja:G (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349272 5gja:H (2.1) BS01 ZN 1.14.17.4 GO:0005507 ... Q41931 28604689
    349273 5gja:H (2.1) BS02 6PC 1.14.17.4 GO:0005507 ... Q41931 28604689
    349274 5gjb:A (1.702) BS01 rna 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A0U4DG08 27430951
    349275 5gjc:A (2.204) BS01 MN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A0U4DG08 27430951
    349276 5gjc:A (2.204) BS02 ATP 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A0U4DG08 27430951
    349277 5gjd:A (2.79) BS01 6V3 2.7.11.25 GO:0004672 ... O43318
    Q15750
    27803473
    349278 5gjf:A (2.89) BS01 6V4 2.7.11.25 GO:0004672 ... O43318
    Q15750
    27803473
    349279 5gjg:A (2.61) BS01 6V5 2.7.11.25 GO:0004672 ... O43318
    Q15750
    27803473
    349280 5gjh:A (1.2) BS01 peptide ? N/A O75791 27927989
    349281 5gjh:C (1.2) BS01 peptide ? N/A O75791 27927989
    349282 5gji:A (0.9) BS01 peptide ? N/A P27986 27927989
    349283 5gjn:A (2.0) BS01 MG 4.1.1.17
    4.1.1.18
    GO:0003824 ... O50657 27861532
    349284 5gjn:A (2.0) BS02 MG 4.1.1.17
    4.1.1.18
    GO:0003824 ... O50657 27861532
    349285 5gjo:A (1.8) BS01 PLP 4.1.1.17
    4.1.1.18
    GO:0003824 ... O50657 28095457 MOAD: Kd=21uM
    349286 5gjo:B (1.8) BS01 PLP 4.1.1.17
    4.1.1.18
    GO:0003824 ... O50657 28095457 MOAD: Kd=21uM
    349287 5gjp:A (2.5) BS01 N2P 4.1.1.17
    4.1.1.18
    GO:0003824 ... O50657 27861532
    349288 5gjp:A (2.5) BS02 PLP 4.1.1.17
    4.1.1.18
    GO:0003824 ... O50657 27861532
    349289 5gjq:H (4.35) BS01 ADP ? GO:0000502 ... P35998 27428775
    349290 5gjq:I (4.35) BS01 ADP ? GO:0000502 ... P62191 27428775
    349291 5gjq:I (4.35) BS02 ADP ? GO:0000502 ... P62191 27428775
    349292 5gjq:J (4.35) BS01 ADP ? GO:0000502 ... P62195 27428775
    349293 5gjq:K (4.35) BS01 ADP ? GO:0000502 ... P43686 27428775
    349294 5gjq:L (4.35) BS01 ADP ? GO:0000502 ... P62333 27428775
    349295 5gjq:M (4.35) BS01 ADP ? GO:0000502 ... P17980 27428775
    349296 5gjr:0 (3.5) BS01 ADP ? GO:0000502 ... P17980 27428775
    349297 5gjr:H (3.5) BS01 ADP ? GO:0000502 ... P35998 27428775
    349298 5gjr:I (3.5) BS01 ADP ? GO:0000502 ... P62191 27428775
    349299 5gjr:I (3.5) BS02 ADP ? GO:0000502 ... P62191 27428775
    349300 5gjr:J (3.5) BS01 ADP ? GO:0000502 ... P62195 27428775
    349301 5gjr:K (3.5) BS01 ADP ? GO:0000502 ... P43686 27428775
    349302 5gjr:L (3.5) BS01 ADP ? GO:0000502 ... P62333 27428775
    349303 5gjr:L (3.5) BS02 ADP ? GO:0000502 ... P62333 27428775
    349304 5gjr:M (3.5) BS01 ADP ? GO:0000502 ... P17980 27428775
    349305 5gjr:v (3.5) BS01 ADP ? GO:0000502 ... P35998 27428775
    349306 5gjr:w (3.5) BS01 ADP ? GO:0000502 ... P62191 27428775
    349307 5gjr:w (3.5) BS02 ADP ? GO:0000502 ... P62191 27428775
    349308 5gjr:x (3.5) BS01 ADP ? GO:0000502 ... P62195 27428775
    349309 5gjr:y (3.5) BS01 ADP ? GO:0000502 ... P43686 27428775
    349310 5gjr:z (3.5) BS01 ADP ? GO:0000502 ... P62333 27428775
    349311 5gjr:z (3.5) BS02 ADP ? GO:0000502 ... P62333 27428775
    349312 5gju:A (1.6) BS01 AMP 3.6.4.13 GO:0003676 ... P0A9P6 29107486
    349313 5gjw:F (3.9) BS01 CA ? N/A P13806 27580036
    349314 5gjx:A (2.06) BS01 peptide ? N/A Q6I7L2 N/A
    349315 5gjy:A (1.71) BS01 peptide ? N/A Q6I7L2 N/A
    349316 5gk1:A (1.83) BS01 2K3 ? GO:0016746 ... Q7N4Z6 27866911
    349317 5gk1:C (1.83) BS01 2K3 ? GO:0016746 ... Q7N4Z6 27866911
    349318 5gk3:A (1.8) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349319 5gk3:B (1.8) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349320 5gk4:A (2.0) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349321 5gk4:A (2.0) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349322 5gk4:B (2.0) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349323 5gk4:B (2.0) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349324 5gk5:A (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349325 5gk5:A (1.9) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349326 5gk5:B (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349327 5gk5:C (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349328 5gk5:C (1.9) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349329 5gk5:D (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349330 5gk5:D (1.9) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349331 5gk5:E (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349332 5gk5:E (1.9) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349333 5gk5:F (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349334 5gk5:G (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349335 5gk5:G (1.9) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349336 5gk5:H (1.9) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349337 5gk5:H (1.9) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349338 5gk6:A (1.8) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349339 5gk6:B (1.8) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349340 5gk7:A (1.8) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349341 5gk7:B (1.8) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349342 5gk8:A (2.002) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349343 5gk8:A (2.002) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349344 5gk8:B (2.002) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349345 5gk8:B (2.002) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 N/A
    349346 5gk9:A (2.4) BS01 peptide 2.3.1.48 GO:0004402 ... O95251 28334966
    349347 5gk9:A (2.4) BS02 ZN 2.3.1.48 GO:0004402 ... O95251 28334966
    349348 5gk9:A (2.4) BS03 ACO 2.3.1.48 GO:0004402 ... O95251 28334966
    349349 5gkd:A (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    349350 5gkd:A (2.194) BS02 CO3 ? GO:0046872 ... A0A1S4NYD7 28154171
    349351 5gkd:B (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    349352 5gkd:B (2.194) BS02 CO3 ? GO:0046872 ... A0A1S4NYD7 28154171
    349353 5gkd:C (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    349354 5gkd:C (2.194) BS02 CO3 ? GO:0046872 ... A0A1S4NYD7 28154171
    349355 5gkd:D (2.194) BS01 CA ? GO:0046872 ... A0A1S4NYD7 28154171
    349356 5gkd:D (2.194) BS02 CO3 ? GO:0046872 ... A0A1S4NYD7 28154171
    349357 5gke:A (2.4) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349358 5gke:A (2.4) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349359 5gke:A (2.4) BS03 MG 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349360 5gke:B (2.4) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349361 5gke:B (2.4) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349362 5gke:B (2.4) BS03 MG 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349363 5gkf:A (2.8) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349364 5gkf:A (2.8) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349365 5gkf:B (2.8) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349366 5gkf:B (2.8) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349367 5gkg:A (2.6) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349368 5gkg:A (2.6) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349369 5gkg:A (2.6) BS03 MG 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349370 5gkg:B (2.6) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349371 5gkg:B (2.6) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349372 5gkh:A (2.9) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349373 5gkh:A (2.9) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349374 5gkh:B (2.9) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349375 5gkh:B (2.9) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349376 5gkh:B (2.9) BS03 MG 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349377 5gki:A (2.9) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349378 5gki:A (2.9) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349379 5gki:A (2.9) BS03 MG 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349380 5gki:B (2.9) BS01 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349381 5gki:B (2.9) BS02 dna 3.1.-.- GO:0000014 ... Q5JER9 27773688
    349382 5gkn:A (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    349383 5gkn:A (3.2) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 N/A
    349384 5gkn:B (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    349385 5gkn:B (3.2) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 N/A
    349386 5gkn:C (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    349387 5gkn:C (3.2) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 N/A
    349388 5gkn:D (3.2) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 N/A
    349389 5gkn:D (3.2) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 N/A
    349390 5gkp:A (2.3) BS01 dna 3.1.30.- GO:0003676 ... Q95NM6 27738134
    349391 5gkp:B (2.3) BS01 dna 3.1.30.- GO:0003676 ... Q95NM6 27738134
    349392 5gkq:A (2.565) BS01 BEM ? GO:0046872 ... A0A1S4NYD8 28154171
    349393 5gkq:A (2.565) BS02 BEM ? GO:0046872 ... A0A1S4NYD8 28154171
    349394 5gkq:A (2.565) BS03 CA ? GO:0046872 ... A0A1S4NYD8 28154171
    349395 5gkq:B (2.565) BS01 CA ? GO:0046872 ... A0A1S4NYD8 28154171
    349396 5gkr:A (2.1) BS01 dna N/A N/A N/A 29180749
    349397 5gkr:B (2.1) BS01 dna N/A N/A N/A 29180749
    349398 5gkw:A (2.01) BS01 6VV 3.3.2.8 GO:0016787 ... Q9ZAG3 N/A
    349399 5gky:A (3.8) BS01 ZN ? GO:0003151 ... P11716 27468892
    349400 5gky:C (3.8) BS01 ZN ? GO:0003151 ... P11716 27468892

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).